IslandPath Analysis: Silicibacter sp. TM1040



Each circle in the graphic corresponds to a predicted protein-coding ORF in the genome.
Circle colours indicate if an ORF has a higher or lower %G+C than cutoffs you set below
--(default is +/- 3.48 of the mean %G+C).
Strike lines across the circles represent regions with dinucleotide bias above a pre-determined cutoff.
Click on a circle to view a different portion of the table presented below the graph (default is the first 100 ORFs).




A yellow circle indicates its %G+C value is bigger than the high value.
A green circle indicates its %G+C value is bigger than the low value and smaller than the high value.
A pink circle indicates its %G+C value is smaller than the low value.

A strike line across the circles indicates the region has dinucleotide bais above 1 STD DEV.
A black verticle bar indicates a transfer RNA gene lies between the two ORFs.
A purple verticle bar indicates a ribosomal RNA gene lies between the two ORFs.
A deep blue verticle bar indicates both a tRNA and rRNA gene lie between the two ORFs.
A black square indicates the dot is annotated as a transposase.
A black triangle indicates the dot is annotated as an integrase.


Low:  High:    Mean: 60.41   STD DEV: 3.16
Silicibacter sp. TM1040, complete genome - 1..3200938
3030 proteins
Pos	%G+C	SD	Location	Strand	Length	PID	Gene	Synonym	Code	Product
748	 60.51	0	804573..805871	+	432	99080589	-	TM1040_0748	-	NADH dehydrogenase I subunit F
749	 58.06	0	805880..806239	+	119	99080590	-	TM1040_0749	-	hypothetical protein
750	 56.56	-1	806338..806802	+	154	99080591	-	TM1040_0750	-	hypothetical protein
751	 61.88	0	806806..808788	+	660	99080592	-	TM1040_0751	-	NADH dehydrogenase subunit G
752	 59.03	0	808785..809177	+	130	99080593	-	TM1040_0752	-	putative lipoprotein
753	 58.86	0	809184..810221	+	345	99080594	-	TM1040_0753	-	NADH dehydrogenase subunit H
754	 59.80	0	810223..810717	+	164	99080595	-	TM1040_0754	-	NADH dehydrogenase subunit I
755	 60.27	0	810750..811124	+	124	99080596	-	TM1040_0755	-	carboxymuconolactone decarboxylase
756	 58.87	0	811121..811723	+	200	99080597	-	TM1040_0756	-	NADH dehydrogenase subunit J
757	 54.58	-1	811738..812043	+	101	99080598	-	TM1040_0757	-	NADH dehydrogenase subunit K
758	 58.46	0	812049..814169	+	706	99080599	-	TM1040_0758	-	NADH dehydrogenase subunit L
759	 57.85	0	814169..815734	+	521	99080600	-	TM1040_0759	-	NADH dehydrogenase subunit M
760	 59.85	0	815747..817183	+	478	99080601	-	TM1040_0760	-	NADH dehydrogenase subunit N
761	 64.00	+1	817272..818021	+	249	99080602	-	TM1040_0761	-	biotin--acetyl-CoA-carboxylase ligase
762	 58.88	0	818036..818818	+	260	99080603	-	TM1040_0762	-	pantothenate kinase
763	 60.67	0	818815..820482	+	555	99080604	-	TM1040_0763	-	beta-lactamase-like
764	 64.24	+1	820756..821496	-	246	99080605	-	TM1040_0764	-	triosephosphate isomerase
765	 58.76	0	821644..821997	-	117	99080606	-	TM1040_0765	-	HesB/YadR/YfhF
766	 56.75	-1	822118..822480	-	120	99080607	-	TM1040_0766	-	hypothetical protein
767	 60.44	0	822656..822928	-	90	99080608	-	TM1040_0767	-	hypothetical protein
768	 58.33	0	822928..823815	-	295	99080609	-	TM1040_0768	-	SPFH domain-containing protein/band 7 family protein
769	 61.79	0	823906..825321	-	471	99080610	-	TM1040_0769	-	SSU ribosomal protein S6P modification protein
770	 60.30	0	825392..826522	+	376	99080611	-	TM1040_0770	-	queuine tRNA-ribosyltransferase
771	 60.07	0	826781..827053	-	90	99080612	-	TM1040_0771	-	hypothetical protein
772	 54.12	-1	827050..827559	-	169	99080613	-	TM1040_0772	-	hypothetical protein
773	 61.33	0	827885..828559	+	224	99080614	-	TM1040_0773	-	NADH:flavin oxidoreductase/NADH oxidase
774	 59.85	0	828617..828880	+	87	99080615	-	TM1040_0774	-	Oye family NADH-dependent flavin oxidoreductase
775	 58.70	0	829194..831602	+	802	99080616	-	TM1040_0775	-	Lon-A peptidase
776	 58.81	0	832173..833177	-	334	99080617	-	TM1040_0776	-	phage integrase
777	 56.76	-1	833487..833819	-	110	99080618	-	TM1040_0777	-	hypothetical protein
778	 58.20	0	833924..834868	-	314	99080619	-	TM1040_0778	-	hypothetical protein
779	 61.21	0	834865..835524	-	219	99080620	-	TM1040_0779	-	hypothetical protein
780	 53.23	-2	835670..836443	-	257	99080621	-	TM1040_0780	-	hypothetical protein
781	 60.78	0	836465..836770	-	101	99080622	-	TM1040_0781	-	hypothetical protein
782	 63.49	0	836839..837342	-	167	99080623	-	TM1040_0782	-	hypothetical protein
783	 58.62	0	837342..837950	-	202	99080624	-	TM1040_0783	-	exonuclease
784	 59.34	0	837950..838672	-	240	99080625	-	TM1040_0784	-	ERF
785	 64.63	+1	838781..839026	-	81	99080626	-	TM1040_0785	-	hypothetical protein
786	 57.78	0	839240..839599	-	119	99080627	-	TM1040_0786	-	hypothetical protein
787	 51.91	-2	839907..840665	-	252	99080628	-	TM1040_0787	-	hypothetical protein
788	 51.12	-2	840662..841195	-	177	99080629	-	TM1040_0788	-	hypothetical protein
789	 56.62	-1	841219..841935	-	238	99080630	-	TM1040_0789	-	putative phage repressor
790	 59.10	0	842213..842701	+	162	99080631	-	TM1040_0790	-	hypothetical protein
791	 64.03	+1	842939..843241	+	100	99080632	-	TM1040_0791	-	hypothetical protein
792	 57.66	0	843244..843765	+	173	99080633	-	TM1040_0792	-	hypothetical protein
793	 61.90	0	843762..844118	+	118	99080634	-	TM1040_0793	-	endodeoxyribonuclease RusA
794	 60.38	0	844130..844861	+	243	99080635	-	TM1040_0794	-	hypothetical protein
795	 62.41	0	844851..845414	+	187	99080636	-	TM1040_0795	-	hypothetical protein
796	 59.58	0	845629..846108	+	159	99080637	-	TM1040_0796	-	single-strand binding protein
797	 60.00	0	846108..846362	+	84	99080638	-	TM1040_0797	-	hypothetical protein
798	 57.90	0	846385..846966	+	193	99080639	-	TM1040_0798	-	hypothetical protein
799	 58.06	0	847447..847725	-	92	99080640	-	TM1040_0799	-	hypothetical protein
800	 58.03	0	847787..848365	+	192	99080641	-	TM1040_0800	-	terminase small subunit
801	 60.91	0	848343..849593	+	416	99080642	-	TM1040_0801	-	hypothetical protein
802	 61.09	0	849590..850969	+	459	99080643	-	TM1040_0802	-	hypothetical protein
803	 58.95	0	850956..852005	+	349	99080644	-	TM1040_0803	-	phage putative head morphogenesis protein, SPP1 gp7
804	 62.72	0	852235..852918	+	227	99080645	-	TM1040_0804	-	hypothetical protein
805	 61.51	0	852931..853899	+	322	99080646	-	TM1040_0805	-	hypothetical protein
806	 52.38	-2	853963..854214	+	83	99080647	-	TM1040_0806	-	hypothetical protein
807	 65.17	+1	854216..854683	+	155	99080648	-	TM1040_0807	-	hypothetical protein
808	 58.22	0	854680..855129	+	149	99080649	-	TM1040_0808	-	hypothetical protein
809	 60.53	0	855126..855500	+	124	99080650	-	TM1040_0809	-	hypothetical protein
810	 61.19	0	855500..855901	+	133	99080651	-	TM1040_0810	-	hypothetical protein
811	 62.16	0	855898..856296	+	132	99080652	-	TM1040_0811	-	hypothetical protein
812	 59.51	0	856572..857060	+	162	99080653	-	TM1040_0812	-	hypothetical protein
813	 56.26	-1	857163..857633	+	156	99080654	-	TM1040_0813	-	hypothetical protein
814	 59.76	0	857759..858004	+	81	99080655	-	TM1040_0814	-	hypothetical protein
815	 59.14	0	858001..858372	-	123	99080656	-	TM1040_0815	-	XRE family transcriptional regulator
816	 54.46	-1	858386..858688	-	100	99080657	-	TM1040_0816	-	hypothetical protein
817	 50.46	-2	858798..859124	-	108	99080658	-	TM1040_0817	-	hypothetical protein
818	 54.50	-1	859121..859564	-	147	99080659	-	TM1040_0818	-	hypothetical protein
819	 60.88	0	859581..863936	+	1451	99080660	-	TM1040_0819	-	tape measure domain-containing protein
820	 56.83	-1	863936..864880	+	314	99080661	-	TM1040_0820	-	hypothetical protein
821	 52.70	-2	864877..866394	+	505	99080662	-	TM1040_0821	-	hypothetical protein
822	 59.34	0	866391..866936	+	181	99080663	-	TM1040_0822	-	hypothetical protein
823	 62.99	0	866908..867261	+	117	99080664	-	TM1040_0823	-	hypothetical protein
824	 57.91	0	867268..867564	+	98	99080665	-	TM1040_0824	-	hypothetical protein
825	 62.30	0	867561..867995	+	144	99080666	-	TM1040_0825	-	hypothetical protein
826	 60.99	0	867997..868806	+	269	99080667	-	TM1040_0826	-	hypothetical protein
827	 58.90	0	868803..869201	+	132	99080668	-	TM1040_0827	-	hypothetical protein
828	 52.03	-2	869373..869987	-	204	99080669	-	TM1040_0828	-	two component LuxR family transcriptional regulator
829	 50.23	-2	870157..870582	-	141	99080670	-	TM1040_0829	-	response regulator receiver protein
830	 51.90	-2	870579..871763	-	394	99080671	-	TM1040_0830	-	PAS/PAC sensor signal transduction histidine kinase
831	 58.77	0	872933..873844	-	303	99080672	-	TM1040_0831	-	LysR family transcriptional regulator
832	 63.77	+1	873956..875506	+	516	99080673	-	TM1040_0832	-	NADH/ubiquinone/plastoquinone (complex I)
833	 64.35	+1	875521..877938	+	805	99080674	-	TM1040_0833	-	hypothetical protein
834	 61.93	0	878016..879683	-	555	99080675	-	TM1040_0834	-	amidohydrolase 3
835	 56.24	-1	879761..880786	-	341	99080676	-	TM1040_0835	-	extracellular solute-binding protein
836	 57.05	-1	880854..881654	-	266	99080677	-	TM1040_0836	-	binding-protein-dependent transport systems inner membrane component
837	 60.13	0	881647..882579	-	310	99080678	-	TM1040_0837	-	binding-protein-dependent transport systems inner membrane component
838	 57.32	0	882584..883696	-	370	99080679	-	TM1040_0838	-	spermidine/putrescine ABC transporter ATP-binding subunit
839	 60.09	0	884254..887037	+	927	99080680	-	TM1040_0839	-	methyl-accepting chemotaxis sensory transducer
840	 49.38	-2	887215..887457	-	80	99080681	-	TM1040_0840	-	hypothetical protein
841	 56.75	-1	887959..888321	+	120	99080682	-	TM1040_0841	-	hypothetical protein
842	 62.31	0	888359..889966	+	535	99080683	-	TM1040_0842	-	peptidase C1A, papain
843	 59.79	0	889986..894845	+	1619	99080684	-	TM1040_0843	-	OmpA/MotB
844	 62.95	0	894888..895775	-	295	99080685	-	TM1040_0844	-	LysR family transcriptional regulator
845	 64.25	+1	895892..897502	+	536	99080686	-	TM1040_0845	-	glucose-methanol-choline oxidoreductase
846	 63.01	0	897499..898674	+	391	99080687	-	TM1040_0846	-	mandelate racemase/muconate lactonizing-like protein
847	 63.97	+1	898671..900155	+	494	99080688	-	TM1040_0847	-	betaine-aldehyde dehydrogenase
60.41	MEAN

3.16	STD DEV




Last Updated: Dec 04, 2008
      
Funding for this work was provided by the Peter Wall Institute for Advanced Studies. This service is hosted by the Brinkman Laboratory of the Department of Molecular Biology and Biochemistry at Simon Fraser University.