IslandPath Analysis: Silicibacter sp. TM1040



Each circle in the graphic corresponds to a predicted protein-coding ORF in the genome.
Circle colours indicate if an ORF has a higher or lower %G+C than cutoffs you set below
--(default is +/- 3.48 of the mean %G+C).
Strike lines across the circles represent regions with dinucleotide bias above a pre-determined cutoff.
Click on a circle to view a different portion of the table presented below the graph (default is the first 100 ORFs).




A yellow circle indicates its %G+C value is bigger than the high value.
A green circle indicates its %G+C value is bigger than the low value and smaller than the high value.
A pink circle indicates its %G+C value is smaller than the low value.

A strike line across the circles indicates the region has dinucleotide bais above 1 STD DEV.
A black verticle bar indicates a transfer RNA gene lies between the two ORFs.
A purple verticle bar indicates a ribosomal RNA gene lies between the two ORFs.
A deep blue verticle bar indicates both a tRNA and rRNA gene lie between the two ORFs.
A black square indicates the dot is annotated as a transposase.
A black triangle indicates the dot is annotated as an integrase.


Low:  High:    Mean: 60.41   STD DEV: 3.16
Silicibacter sp. TM1040, complete genome - 1..3200938
3030 proteins
Pos	%G+C	SD	Location	Strand	Length	PID	Gene	Synonym	Code	Product
712	 61.75	0	766372..767652	+	426	99080553	-	TM1040_0712	-	hypothetical protein
713	 62.74	0	767742..768734	-	330	99080554	-	TM1040_0713	-	binding-protein-dependent transport systems inner membrane component
714	 58.73	0	768727..769734	-	335	99080555	-	TM1040_0714	-	binding-protein-dependent transport systems inner membrane component
715	 60.54	0	769931..771628	-	565	99080556	-	TM1040_0715	-	extracellular solute-binding protein
716	 59.47	0	771989..773809	+	606	99080557	-	TM1040_0716	-	ABC transporter related
717	 61.01	0	773813..774979	+	388	99080558	-	TM1040_0717	-	acetylornithine deacetylase
718	 60.87	0	775182..776354	+	390	99080559	-	TM1040_0718	-	peptidase M20D, amidohydrolase
719	 59.97	0	776435..777598	+	387	99080560	-	TM1040_0719	-	peptidase M20D, amidohydrolase
720	 54.69	-1	777706..778089	-	127	99080561	-	TM1040_0720	-	hypothetical protein
721	 58.27	0	778374..778766	-	130	99080562	-	TM1040_0721	-	hypothetical protein
722	 61.45	0	779020..780093	-	357	99080563	-	TM1040_0722	-	glycosyl transferase, group 1
723	 63.52	0	780104..781408	-	434	99080564	-	TM1040_0723	-	three-deoxy-D-manno-octulosonic-acid transferase-like
724	 59.82	0	781420..782427	-	335	99080565	moaA	TM1040_0724	-	molybdenum cofactor biosynthesis protein A
725	 63.73	+1	782613..783122	+	169	99080566	-	TM1040_0725	-	hypothetical protein
726	 60.32	0	783149..783826	-	225	99080567	-	TM1040_0726	-	hypothetical protein
727	 61.36	0	783823..785631	-	602	99080568	-	TM1040_0727	-	D-fructose-6-phosphate amidotransferase
728	 62.52	0	785636..786985	-	449	99080569	-	TM1040_0728	-	UDP-N-acetylglucosamine pyrophosphorylase / glucosamine-1-phosphate N-acetyltransferase
729	 63.72	+1	787121..787798	+	225	99080570	-	TM1040_0729	-	HAD family hydrolase
730	 61.00	0	787842..788300	-	152	99080571	-	TM1040_0730	-	hypothetical protein
731	 61.66	0	788430..789647	+	405	99080572	-	TM1040_0731	-	DegT/DnrJ/EryC1/StrS aminotransferase
732	 59.28	0	789814..790977	+	387	99080573	-	TM1040_0732	-	isovaleryl-CoA dehydrogenase
733	 62.39	0	790985..791335	+	116	99080574	-	TM1040_0733	-	hypothetical protein
734	 60.86	0	791464..792066	-	200	99080575	-	TM1040_0734	-	OmpW
735	 62.75	0	792161..793741	+	526	99080576	-	TM1040_0735	-	AMP-dependent synthetase and ligase
736	 55.31	-1	793741..794145	+	134	99080577	-	TM1040_0736	-	hypothetical protein
737	 62.87	0	794142..795746	+	534	99080578	-	TM1040_0737	-	propionyl-CoA carboxylase
738	 63.36	0	795827..797764	+	645	99080579	-	TM1040_0738	-	3-methylcrotonoyl-CoA carboxylase, alpha subunit
739	 61.94	0	797797..798663	+	288	99080580	-	TM1040_0739	-	hydroxymethylglutaryl-CoA lyase
740	 63.99	+1	798693..799478	+	261	99080581	-	TM1040_0740	-	enoyl-CoA hydratase
741	 53.55	-2	799720..800085	+	121	99080582	-	TM1040_0741	-	NADH dehydrogenase subunit A
742	 60.95	0	800085..800609	+	174	99080583	-	TM1040_0742	-	NADH dehydrogenase subunit B
743	 59.41	0	800625..801230	+	201	99080584	-	TM1040_0743	-	NADH dehydrogenase subunit C
744	 59.65	0	801379..802590	+	403	99080585	-	TM1040_0744	-	NADH dehydrogenase subunit D
745	 56.36	-1	802587..803081	+	164	99080586	-	TM1040_0745	-	hypothetical protein
746	 60.65	0	803081..804277	+	398	99080587	-	TM1040_0746	-	NADH dehydrogenase subunit E
747	 59.31	0	804336..804566	+	76	99080588	-	TM1040_0747	-	hypothetical protein
748	 60.51	0	804573..805871	+	432	99080589	-	TM1040_0748	-	NADH dehydrogenase I subunit F
749	 58.06	0	805880..806239	+	119	99080590	-	TM1040_0749	-	hypothetical protein
750	 56.56	-1	806338..806802	+	154	99080591	-	TM1040_0750	-	hypothetical protein
751	 61.88	0	806806..808788	+	660	99080592	-	TM1040_0751	-	NADH dehydrogenase subunit G
752	 59.03	0	808785..809177	+	130	99080593	-	TM1040_0752	-	putative lipoprotein
753	 58.86	0	809184..810221	+	345	99080594	-	TM1040_0753	-	NADH dehydrogenase subunit H
754	 59.80	0	810223..810717	+	164	99080595	-	TM1040_0754	-	NADH dehydrogenase subunit I
755	 60.27	0	810750..811124	+	124	99080596	-	TM1040_0755	-	carboxymuconolactone decarboxylase
756	 58.87	0	811121..811723	+	200	99080597	-	TM1040_0756	-	NADH dehydrogenase subunit J
757	 54.58	-1	811738..812043	+	101	99080598	-	TM1040_0757	-	NADH dehydrogenase subunit K
758	 58.46	0	812049..814169	+	706	99080599	-	TM1040_0758	-	NADH dehydrogenase subunit L
759	 57.85	0	814169..815734	+	521	99080600	-	TM1040_0759	-	NADH dehydrogenase subunit M
760	 59.85	0	815747..817183	+	478	99080601	-	TM1040_0760	-	NADH dehydrogenase subunit N
761	 64.00	+1	817272..818021	+	249	99080602	-	TM1040_0761	-	biotin--acetyl-CoA-carboxylase ligase
762	 58.88	0	818036..818818	+	260	99080603	-	TM1040_0762	-	pantothenate kinase
763	 60.67	0	818815..820482	+	555	99080604	-	TM1040_0763	-	beta-lactamase-like
764	 64.24	+1	820756..821496	-	246	99080605	-	TM1040_0764	-	triosephosphate isomerase
765	 58.76	0	821644..821997	-	117	99080606	-	TM1040_0765	-	HesB/YadR/YfhF
766	 56.75	-1	822118..822480	-	120	99080607	-	TM1040_0766	-	hypothetical protein
767	 60.44	0	822656..822928	-	90	99080608	-	TM1040_0767	-	hypothetical protein
768	 58.33	0	822928..823815	-	295	99080609	-	TM1040_0768	-	SPFH domain-containing protein/band 7 family protein
769	 61.79	0	823906..825321	-	471	99080610	-	TM1040_0769	-	SSU ribosomal protein S6P modification protein
770	 60.30	0	825392..826522	+	376	99080611	-	TM1040_0770	-	queuine tRNA-ribosyltransferase
771	 60.07	0	826781..827053	-	90	99080612	-	TM1040_0771	-	hypothetical protein
772	 54.12	-1	827050..827559	-	169	99080613	-	TM1040_0772	-	hypothetical protein
773	 61.33	0	827885..828559	+	224	99080614	-	TM1040_0773	-	NADH:flavin oxidoreductase/NADH oxidase
774	 59.85	0	828617..828880	+	87	99080615	-	TM1040_0774	-	Oye family NADH-dependent flavin oxidoreductase
775	 58.70	0	829194..831602	+	802	99080616	-	TM1040_0775	-	Lon-A peptidase
776	 58.81	0	832173..833177	-	334	99080617	-	TM1040_0776	-	phage integrase
777	 56.76	-1	833487..833819	-	110	99080618	-	TM1040_0777	-	hypothetical protein
778	 58.20	0	833924..834868	-	314	99080619	-	TM1040_0778	-	hypothetical protein
779	 61.21	0	834865..835524	-	219	99080620	-	TM1040_0779	-	hypothetical protein
780	 53.23	-2	835670..836443	-	257	99080621	-	TM1040_0780	-	hypothetical protein
781	 60.78	0	836465..836770	-	101	99080622	-	TM1040_0781	-	hypothetical protein
782	 63.49	0	836839..837342	-	167	99080623	-	TM1040_0782	-	hypothetical protein
783	 58.62	0	837342..837950	-	202	99080624	-	TM1040_0783	-	exonuclease
784	 59.34	0	837950..838672	-	240	99080625	-	TM1040_0784	-	ERF
785	 64.63	+1	838781..839026	-	81	99080626	-	TM1040_0785	-	hypothetical protein
786	 57.78	0	839240..839599	-	119	99080627	-	TM1040_0786	-	hypothetical protein
787	 51.91	-2	839907..840665	-	252	99080628	-	TM1040_0787	-	hypothetical protein
788	 51.12	-2	840662..841195	-	177	99080629	-	TM1040_0788	-	hypothetical protein
789	 56.62	-1	841219..841935	-	238	99080630	-	TM1040_0789	-	putative phage repressor
790	 59.10	0	842213..842701	+	162	99080631	-	TM1040_0790	-	hypothetical protein
791	 64.03	+1	842939..843241	+	100	99080632	-	TM1040_0791	-	hypothetical protein
792	 57.66	0	843244..843765	+	173	99080633	-	TM1040_0792	-	hypothetical protein
793	 61.90	0	843762..844118	+	118	99080634	-	TM1040_0793	-	endodeoxyribonuclease RusA
794	 60.38	0	844130..844861	+	243	99080635	-	TM1040_0794	-	hypothetical protein
795	 62.41	0	844851..845414	+	187	99080636	-	TM1040_0795	-	hypothetical protein
796	 59.58	0	845629..846108	+	159	99080637	-	TM1040_0796	-	single-strand binding protein
797	 60.00	0	846108..846362	+	84	99080638	-	TM1040_0797	-	hypothetical protein
798	 57.90	0	846385..846966	+	193	99080639	-	TM1040_0798	-	hypothetical protein
799	 58.06	0	847447..847725	-	92	99080640	-	TM1040_0799	-	hypothetical protein
800	 58.03	0	847787..848365	+	192	99080641	-	TM1040_0800	-	terminase small subunit
801	 60.91	0	848343..849593	+	416	99080642	-	TM1040_0801	-	hypothetical protein
802	 61.09	0	849590..850969	+	459	99080643	-	TM1040_0802	-	hypothetical protein
803	 58.95	0	850956..852005	+	349	99080644	-	TM1040_0803	-	phage putative head morphogenesis protein, SPP1 gp7
804	 62.72	0	852235..852918	+	227	99080645	-	TM1040_0804	-	hypothetical protein
805	 61.51	0	852931..853899	+	322	99080646	-	TM1040_0805	-	hypothetical protein
806	 52.38	-2	853963..854214	+	83	99080647	-	TM1040_0806	-	hypothetical protein
807	 65.17	+1	854216..854683	+	155	99080648	-	TM1040_0807	-	hypothetical protein
808	 58.22	0	854680..855129	+	149	99080649	-	TM1040_0808	-	hypothetical protein
809	 60.53	0	855126..855500	+	124	99080650	-	TM1040_0809	-	hypothetical protein
810	 61.19	0	855500..855901	+	133	99080651	-	TM1040_0810	-	hypothetical protein
811	 62.16	0	855898..856296	+	132	99080652	-	TM1040_0811	-	hypothetical protein
60.41	MEAN

3.16	STD DEV




Last Updated: Dec 04, 2008
      
Funding for this work was provided by the Peter Wall Institute for Advanced Studies. This service is hosted by the Brinkman Laboratory of the Department of Molecular Biology and Biochemistry at Simon Fraser University.