version 1.0
Silicibacter sp. TM1040, complete genome - 1..3200938 3030 proteins Pos %G+C SD Location Strand Length PID Gene Synonym Code Product 653 59.47 0 699813..700646 - 277 99080494 - TM1040_0653 - 2-dehydro-3-deoxyphosphooctonate aldolase 654 61.15 0 700651..702408 - 585 99080495 - TM1040_0654 - capsule polysaccharide export protein-like 655 52.88 -2 702386..703045 - 219 99080496 - TM1040_0655 - ABC transporter related 656 62.35 0 703380..703982 + 200 99080497 - TM1040_0656 - uracil-DNA glycosylase superfamily protein 657 62.25 0 703975..704766 + 263 99080498 - TM1040_0657 - hypothetical protein 658 59.11 0 704912..705784 - 290 99080499 - TM1040_0658 - putative glutathione S-transferase YghU 659 57.41 0 706043..706831 + 262 99080500 - TM1040_0659 - hypothetical protein 660 61.07 0 706831..707241 + 136 99080501 - TM1040_0660 - hypothetical protein 661 58.64 0 707349..707921 + 190 99080502 - TM1040_0661 - hypothetical protein 662 63.45 0 708098..708688 - 196 99080503 - TM1040_0662 - GcrA cell cycle regulator 663 59.39 0 708878..709702 + 274 99080504 - TM1040_0663 - ABC-2 type transporter 664 61.13 0 709699..710691 - 330 99080505 - TM1040_0664 - hypothetical protein 665 61.31 0 710999..712174 + 391 99080506 - TM1040_0665 - bifunctional N-succinyldiaminopimelate-aminotransferase/acetylornithine transaminase protein 666 59.22 0 712251..713177 + 308 99080507 - TM1040_0666 - ornithine carbamoyltransferase 667 61.37 0 713370..714860 - 496 99080508 - TM1040_0667 - phosphate transporter 668 58.76 0 714982..715449 - 155 99080509 - TM1040_0668 - NUDIX hydrolase 669 66.75 +2 715629..718154 - 841 99080510 - TM1040_0669 - ATP-dependent helicase HrpB 670 63.17 0 718401..719402 + 333 99080511 - TM1040_0670 - arginine/ornithine transport system ATPase 671 59.11 0 719704..719994 + 96 99080512 rpmB TM1040_0671 - 50S ribosomal protein L28 672 64.06 +1 720156..720500 + 114 99080513 - TM1040_0672 - hypothetical protein 673 57.11 -1 720577..721068 + 163 99080514 - TM1040_0673 - hypothetical protein 674 59.94 0 721127..721825 - 232 99080515 - TM1040_0674 - NAD-dependent deacetylase 675 55.56 -1 721940..722389 + 149 99080516 - TM1040_0675 - protein tyrosine phosphatase 676 58.90 0 722497..723462 - 321 99080517 - TM1040_0676 - LysR family transcriptional regulator 677 64.74 +1 723729..724040 - 103 99080518 - TM1040_0677 - hypothetical protein 678 58.56 0 724251..726050 + 599 99080519 - TM1040_0678 - GTP-binding protein LepA 679 63.39 0 726193..727596 + 467 99080520 - TM1040_0679 - UDP-N-acetylmuramoylalanine--D-glutamate ligase 680 63.97 +1 727602..728786 - 394 99080521 - TM1040_0680 - HI0933-like protein 681 60.51 0 729001..730170 + 389 99080522 - TM1040_0681 - cell division protein FtsW 682 65.30 +1 730217..731314 + 365 99080523 murG TM1040_0682 - N-acetylglucosaminyl transferase 683 60.99 0 731311..732720 + 469 99080524 murC TM1040_0683 - UDP-N-acetylmuramate--L-alanine ligase 684 57.20 -1 732884..733126 + 80 99080525 - TM1040_0684 - hypothetical protein 685 61.70 0 733268..734194 + 308 99080526 - TM1040_0685 - UDP-N-acetylmuramate dehydrogenase 686 62.11 0 734517..735437 + 306 99080527 - TM1040_0686 - D-alanine--D-alanine ligase 687 61.78 0 735425..736324 + 299 99080528 - TM1040_0687 - cell division protein FtsQ 688 62.01 0 736308..737660 + 450 99080529 - TM1040_0688 - cell division protein FtsA 689 62.96 0 738085..739758 + 557 99080530 - TM1040_0689 - cell division protein FtsZ 690 61.08 0 739957..740904 + 315 99080531 lpxC TM1040_0690 - UDP-3-O-[3-hydroxymyristoyl] N-acetylglucosamine deacetylase 691 57.16 -1 741250..742101 + 283 99080532 - TM1040_0691 - competence lipoprotein ComL, putative 692 64.55 +1 742178..743827 + 549 99080533 - TM1040_0692 - DNA repair protein RecN 693 61.00 0 743914..745608 + 564 99080534 - TM1040_0693 - Cl- channel, voltage gated 694 60.89 0 745727..746419 - 230 99080535 - TM1040_0694 - hypothetical protein 695 64.77 +1 746416..746994 - 192 99080536 - TM1040_0695 - nitroreductase 696 62.37 0 747262..747540 + 92 99080537 - TM1040_0696 - hypothetical protein 697 53.91 -2 747648..747890 - 80 99080538 - TM1040_0697 - hypothetical protein 698 58.48 0 748019..748678 + 219 99080539 - TM1040_0698 - peptidase M48, Ste24p 699 60.63 0 748689..749069 + 126 99080540 - TM1040_0699 - hypothetical protein 700 57.25 -1 749165..749440 + 91 99080541 - TM1040_0700 - hypothetical protein 701 58.78 0 749516..751024 - 502 99080542 gatB TM1040_0701 - aspartyl/glutamyl-tRNA amidotransferase subunit B 702 59.05 0 751184..751918 - 244 99080543 - TM1040_0702 - extracellular solute-binding protein 703 60.12 0 752089..754533 + 814 99080544 - TM1040_0703 - RNA binding S1 704 63.85 +1 754656..756002 - 448 99080545 - TM1040_0704 - hypothetical protein 705 61.18 0 756188..756643 - 151 99080546 - TM1040_0705 - hypothetical protein 706 58.95 0 756633..759197 - 854 99080547 - TM1040_0706 - alanyl aminopeptidase 707 61.37 0 759629..761062 - 477 99080548 - TM1040_0707 - NAD(P) transhydrogenase, beta subunit 708 61.46 0 761076..762650 - 524 99080549 pntA TM1040_0708 - NAD(P) transhydrogenase subunit alpha 709 51.32 -2 762745..762972 + 75 99080550 - TM1040_0709 - hypothetical protein 710 61.36 0 762988..763779 - 263 99080551 - TM1040_0710 - peptidase C26 711 60.85 0 763923..766052 - 709 99080552 - TM1040_0711 - malate synthase G 712 61.75 0 766372..767652 + 426 99080553 - TM1040_0712 - hypothetical protein 713 62.74 0 767742..768734 - 330 99080554 - TM1040_0713 - binding-protein-dependent transport systems inner membrane component 714 58.73 0 768727..769734 - 335 99080555 - TM1040_0714 - binding-protein-dependent transport systems inner membrane component 715 60.54 0 769931..771628 - 565 99080556 - TM1040_0715 - extracellular solute-binding protein 716 59.47 0 771989..773809 + 606 99080557 - TM1040_0716 - ABC transporter related 717 61.01 0 773813..774979 + 388 99080558 - TM1040_0717 - acetylornithine deacetylase 718 60.87 0 775182..776354 + 390 99080559 - TM1040_0718 - peptidase M20D, amidohydrolase 719 59.97 0 776435..777598 + 387 99080560 - TM1040_0719 - peptidase M20D, amidohydrolase 720 54.69 -1 777706..778089 - 127 99080561 - TM1040_0720 - hypothetical protein 721 58.27 0 778374..778766 - 130 99080562 - TM1040_0721 - hypothetical protein 722 61.45 0 779020..780093 - 357 99080563 - TM1040_0722 - glycosyl transferase, group 1 723 63.52 0 780104..781408 - 434 99080564 - TM1040_0723 - three-deoxy-D-manno-octulosonic-acid transferase-like 724 59.82 0 781420..782427 - 335 99080565 moaA TM1040_0724 - molybdenum cofactor biosynthesis protein A 725 63.73 +1 782613..783122 + 169 99080566 - TM1040_0725 - hypothetical protein 726 60.32 0 783149..783826 - 225 99080567 - TM1040_0726 - hypothetical protein 727 61.36 0 783823..785631 - 602 99080568 - TM1040_0727 - D-fructose-6-phosphate amidotransferase 728 62.52 0 785636..786985 - 449 99080569 - TM1040_0728 - UDP-N-acetylglucosamine pyrophosphorylase / glucosamine-1-phosphate N-acetyltransferase 729 63.72 +1 787121..787798 + 225 99080570 - TM1040_0729 - HAD family hydrolase 730 61.00 0 787842..788300 - 152 99080571 - TM1040_0730 - hypothetical protein 731 61.66 0 788430..789647 + 405 99080572 - TM1040_0731 - DegT/DnrJ/EryC1/StrS aminotransferase 732 59.28 0 789814..790977 + 387 99080573 - TM1040_0732 - isovaleryl-CoA dehydrogenase 733 62.39 0 790985..791335 + 116 99080574 - TM1040_0733 - hypothetical protein 734 60.86 0 791464..792066 - 200 99080575 - TM1040_0734 - OmpW 735 62.75 0 792161..793741 + 526 99080576 - TM1040_0735 - AMP-dependent synthetase and ligase 736 55.31 -1 793741..794145 + 134 99080577 - TM1040_0736 - hypothetical protein 737 62.87 0 794142..795746 + 534 99080578 - TM1040_0737 - propionyl-CoA carboxylase 738 63.36 0 795827..797764 + 645 99080579 - TM1040_0738 - 3-methylcrotonoyl-CoA carboxylase, alpha subunit 739 61.94 0 797797..798663 + 288 99080580 - TM1040_0739 - hydroxymethylglutaryl-CoA lyase 740 63.99 +1 798693..799478 + 261 99080581 - TM1040_0740 - enoyl-CoA hydratase 741 53.55 -2 799720..800085 + 121 99080582 - TM1040_0741 - NADH dehydrogenase subunit A 742 60.95 0 800085..800609 + 174 99080583 - TM1040_0742 - NADH dehydrogenase subunit B 743 59.41 0 800625..801230 + 201 99080584 - TM1040_0743 - NADH dehydrogenase subunit C 744 59.65 0 801379..802590 + 403 99080585 - TM1040_0744 - NADH dehydrogenase subunit D 745 56.36 -1 802587..803081 + 164 99080586 - TM1040_0745 - hypothetical protein 746 60.65 0 803081..804277 + 398 99080587 - TM1040_0746 - NADH dehydrogenase subunit E 747 59.31 0 804336..804566 + 76 99080588 - TM1040_0747 - hypothetical protein 748 60.51 0 804573..805871 + 432 99080589 - TM1040_0748 - NADH dehydrogenase I subunit F 749 58.06 0 805880..806239 + 119 99080590 - TM1040_0749 - hypothetical protein 750 56.56 -1 806338..806802 + 154 99080591 - TM1040_0750 - hypothetical protein 751 61.88 0 806806..808788 + 660 99080592 - TM1040_0751 - NADH dehydrogenase subunit G 752 59.03 0 808785..809177 + 130 99080593 - TM1040_0752 - putative lipoprotein 60.41 MEAN 3.16 STD DEV
Last Updated: Dec 04, 2008
Funding for this work was provided by the Peter Wall Institute for Advanced Studies. This service is hosted by the Brinkman Laboratory of the Department of Molecular Biology and Biochemistry at Simon Fraser University.