IslandPathversion 1.0

IslandPath Analysis: Silicibacter sp. TM1040



Each circle in the graphic corresponds to a predicted protein-coding ORF in the genome. Circle colours indicate if an ORF has a higher or lower %G+C than cutoffs you set below --(default is +/- 3.48 of the mean %G+C). Strike lines across the circles represent regions with dinucleotide bias above a pre-determined cutoff. Click on a circle to view a different portion of the table presented below the graph (default is the first 100 ORFs).
A yellow circle indicates its %G+C value is bigger than the high value. A green circle indicates its %G+C value is bigger than the low value and smaller than the high value. A pink circle indicates its %G+C value is smaller than the low value. A strike line across the circles indicates the region has dinucleotide bais above 1 STD DEV. A black verticle bar indicates a transfer RNA gene lies between the two ORFs. A purple verticle bar indicates a ribosomal RNA gene lies between the two ORFs. A deep blue verticle bar indicates both a tRNA and rRNA gene lie between the two ORFs. A black square indicates the dot is annotated as a transposase. A black triangle indicates the dot is annotated as an integrase. Low: High: Mean: 60.41 STD DEV: 3.16
Silicibacter sp. TM1040, complete genome - 1..3200938
3030 proteins
Pos	%G+C	SD	Location	Strand	Length	PID	Gene	Synonym	Code	Product
636	 61.11	0	680127..680846	-	239	99080477	-	TM1040_0636	-	response regulator receiver protein
637	 56.79	-1	681032..681436	+	134	99080478	-	TM1040_0637	-	methylmalonyl-CoA epimerase
638	 57.97	0	681506..681781	+	91	99080479	-	TM1040_0638	-	hypothetical protein
639	 59.54	0	681912..682865	-	317	99080480	-	TM1040_0639	-	LysR family transcriptional regulator
640	 52.05	-2	683422..683763	-	113	99080481	-	TM1040_0640	-	hypothetical protein
641	 62.86	0	683825..685609	-	594	99080482	-	TM1040_0641	-	peptidase M24
642	 62.35	0	686000..687877	-	625	99080483	-	TM1040_0642	-	cobalt chelatase, CobT subunit
643	 58.66	0	688037..689023	-	328	99080484	-	TM1040_0643	-	hydrogenobyrinic acid a,c-diamide cobaltochelatase
644	 59.33	0	689252..689851	-	199	99080485	-	TM1040_0644	-	CzcN domain-containing protein
645	 61.88	0	690169..690795	-	208	99080486	-	TM1040_0645	-	heat shock protein DnaJ-like
646	 57.65	0	690913..691167	+	84	99080487	-	TM1040_0646	-	BolA-like protein
647	 66.14	+1	691219..691788	-	189	99080488	-	TM1040_0647	-	hypothetical protein
648	 60.34	0	691865..693112	-	415	99080489	-	TM1040_0648	-	peptidase T
649	 62.46	0	693219..694622	-	467	99080490	-	TM1040_0649	-	hypothetical protein
650	 55.97	-1	694800..696089	+	429	99080491	-	TM1040_0650	-	hypothetical protein
651	 61.57	0	696203..698143	+	646	99080492	-	TM1040_0651	-	AsmA
652	 60.19	0	698293..699789	-	498	99080493	-	TM1040_0652	-	phosphoglucomutase/phosphomannomutase alpha/beta/subunit
653	 59.47	0	699813..700646	-	277	99080494	-	TM1040_0653	-	2-dehydro-3-deoxyphosphooctonate aldolase
654	 61.15	0	700651..702408	-	585	99080495	-	TM1040_0654	-	capsule polysaccharide export protein-like
655	 52.88	-2	702386..703045	-	219	99080496	-	TM1040_0655	-	ABC transporter related
656	 62.35	0	703380..703982	+	200	99080497	-	TM1040_0656	-	uracil-DNA glycosylase superfamily protein
657	 62.25	0	703975..704766	+	263	99080498	-	TM1040_0657	-	hypothetical protein
658	 59.11	0	704912..705784	-	290	99080499	-	TM1040_0658	-	putative glutathione S-transferase YghU
659	 57.41	0	706043..706831	+	262	99080500	-	TM1040_0659	-	hypothetical protein
660	 61.07	0	706831..707241	+	136	99080501	-	TM1040_0660	-	hypothetical protein
661	 58.64	0	707349..707921	+	190	99080502	-	TM1040_0661	-	hypothetical protein
662	 63.45	0	708098..708688	-	196	99080503	-	TM1040_0662	-	GcrA cell cycle regulator
663	 59.39	0	708878..709702	+	274	99080504	-	TM1040_0663	-	ABC-2 type transporter
664	 61.13	0	709699..710691	-	330	99080505	-	TM1040_0664	-	hypothetical protein
665	 61.31	0	710999..712174	+	391	99080506	-	TM1040_0665	-	bifunctional N-succinyldiaminopimelate-aminotransferase/acetylornithine transaminase protein
666	 59.22	0	712251..713177	+	308	99080507	-	TM1040_0666	-	ornithine carbamoyltransferase
667	 61.37	0	713370..714860	-	496	99080508	-	TM1040_0667	-	phosphate transporter
668	 58.76	0	714982..715449	-	155	99080509	-	TM1040_0668	-	NUDIX hydrolase
669	 66.75	+2	715629..718154	-	841	99080510	-	TM1040_0669	-	ATP-dependent helicase HrpB
670	 63.17	0	718401..719402	+	333	99080511	-	TM1040_0670	-	arginine/ornithine transport system ATPase
671	 59.11	0	719704..719994	+	96	99080512	rpmB	TM1040_0671	-	50S ribosomal protein L28
672	 64.06	+1	720156..720500	+	114	99080513	-	TM1040_0672	-	hypothetical protein
673	 57.11	-1	720577..721068	+	163	99080514	-	TM1040_0673	-	hypothetical protein
674	 59.94	0	721127..721825	-	232	99080515	-	TM1040_0674	-	NAD-dependent deacetylase
675	 55.56	-1	721940..722389	+	149	99080516	-	TM1040_0675	-	protein tyrosine phosphatase
676	 58.90	0	722497..723462	-	321	99080517	-	TM1040_0676	-	LysR family transcriptional regulator
677	 64.74	+1	723729..724040	-	103	99080518	-	TM1040_0677	-	hypothetical protein
678	 58.56	0	724251..726050	+	599	99080519	-	TM1040_0678	-	GTP-binding protein LepA
679	 63.39	0	726193..727596	+	467	99080520	-	TM1040_0679	-	UDP-N-acetylmuramoylalanine--D-glutamate ligase
680	 63.97	+1	727602..728786	-	394	99080521	-	TM1040_0680	-	HI0933-like protein
681	 60.51	0	729001..730170	+	389	99080522	-	TM1040_0681	-	cell division protein FtsW
682	 65.30	+1	730217..731314	+	365	99080523	murG	TM1040_0682	-	N-acetylglucosaminyl transferase
683	 60.99	0	731311..732720	+	469	99080524	murC	TM1040_0683	-	UDP-N-acetylmuramate--L-alanine ligase
684	 57.20	-1	732884..733126	+	80	99080525	-	TM1040_0684	-	hypothetical protein
685	 61.70	0	733268..734194	+	308	99080526	-	TM1040_0685	-	UDP-N-acetylmuramate dehydrogenase
686	 62.11	0	734517..735437	+	306	99080527	-	TM1040_0686	-	D-alanine--D-alanine ligase
687	 61.78	0	735425..736324	+	299	99080528	-	TM1040_0687	-	cell division protein FtsQ
688	 62.01	0	736308..737660	+	450	99080529	-	TM1040_0688	-	cell division protein FtsA
689	 62.96	0	738085..739758	+	557	99080530	-	TM1040_0689	-	cell division protein FtsZ
690	 61.08	0	739957..740904	+	315	99080531	lpxC	TM1040_0690	-	UDP-3-O-[3-hydroxymyristoyl] N-acetylglucosamine deacetylase
691	 57.16	-1	741250..742101	+	283	99080532	-	TM1040_0691	-	competence lipoprotein ComL, putative
692	 64.55	+1	742178..743827	+	549	99080533	-	TM1040_0692	-	DNA repair protein RecN
693	 61.00	0	743914..745608	+	564	99080534	-	TM1040_0693	-	Cl- channel, voltage gated
694	 60.89	0	745727..746419	-	230	99080535	-	TM1040_0694	-	hypothetical protein
695	 64.77	+1	746416..746994	-	192	99080536	-	TM1040_0695	-	nitroreductase
696	 62.37	0	747262..747540	+	92	99080537	-	TM1040_0696	-	hypothetical protein
697	 53.91	-2	747648..747890	-	80	99080538	-	TM1040_0697	-	hypothetical protein
698	 58.48	0	748019..748678	+	219	99080539	-	TM1040_0698	-	peptidase M48, Ste24p
699	 60.63	0	748689..749069	+	126	99080540	-	TM1040_0699	-	hypothetical protein
700	 57.25	-1	749165..749440	+	91	99080541	-	TM1040_0700	-	hypothetical protein
701	 58.78	0	749516..751024	-	502	99080542	gatB	TM1040_0701	-	aspartyl/glutamyl-tRNA amidotransferase subunit B
702	 59.05	0	751184..751918	-	244	99080543	-	TM1040_0702	-	extracellular solute-binding protein
703	 60.12	0	752089..754533	+	814	99080544	-	TM1040_0703	-	RNA binding S1
704	 63.85	+1	754656..756002	-	448	99080545	-	TM1040_0704	-	hypothetical protein
705	 61.18	0	756188..756643	-	151	99080546	-	TM1040_0705	-	hypothetical protein
706	 58.95	0	756633..759197	-	854	99080547	-	TM1040_0706	-	alanyl aminopeptidase
707	 61.37	0	759629..761062	-	477	99080548	-	TM1040_0707	-	NAD(P) transhydrogenase, beta subunit
708	 61.46	0	761076..762650	-	524	99080549	pntA	TM1040_0708	-	NAD(P) transhydrogenase subunit alpha
709	 51.32	-2	762745..762972	+	75	99080550	-	TM1040_0709	-	hypothetical protein
710	 61.36	0	762988..763779	-	263	99080551	-	TM1040_0710	-	peptidase C26
711	 60.85	0	763923..766052	-	709	99080552	-	TM1040_0711	-	malate synthase G
712	 61.75	0	766372..767652	+	426	99080553	-	TM1040_0712	-	hypothetical protein
713	 62.74	0	767742..768734	-	330	99080554	-	TM1040_0713	-	binding-protein-dependent transport systems inner membrane component
714	 58.73	0	768727..769734	-	335	99080555	-	TM1040_0714	-	binding-protein-dependent transport systems inner membrane component
715	 60.54	0	769931..771628	-	565	99080556	-	TM1040_0715	-	extracellular solute-binding protein
716	 59.47	0	771989..773809	+	606	99080557	-	TM1040_0716	-	ABC transporter related
717	 61.01	0	773813..774979	+	388	99080558	-	TM1040_0717	-	acetylornithine deacetylase
718	 60.87	0	775182..776354	+	390	99080559	-	TM1040_0718	-	peptidase M20D, amidohydrolase
719	 59.97	0	776435..777598	+	387	99080560	-	TM1040_0719	-	peptidase M20D, amidohydrolase
720	 54.69	-1	777706..778089	-	127	99080561	-	TM1040_0720	-	hypothetical protein
721	 58.27	0	778374..778766	-	130	99080562	-	TM1040_0721	-	hypothetical protein
722	 61.45	0	779020..780093	-	357	99080563	-	TM1040_0722	-	glycosyl transferase, group 1
723	 63.52	0	780104..781408	-	434	99080564	-	TM1040_0723	-	three-deoxy-D-manno-octulosonic-acid transferase-like
724	 59.82	0	781420..782427	-	335	99080565	moaA	TM1040_0724	-	molybdenum cofactor biosynthesis protein A
725	 63.73	+1	782613..783122	+	169	99080566	-	TM1040_0725	-	hypothetical protein
726	 60.32	0	783149..783826	-	225	99080567	-	TM1040_0726	-	hypothetical protein
727	 61.36	0	783823..785631	-	602	99080568	-	TM1040_0727	-	D-fructose-6-phosphate amidotransferase
728	 62.52	0	785636..786985	-	449	99080569	-	TM1040_0728	-	UDP-N-acetylglucosamine pyrophosphorylase / glucosamine-1-phosphate N-acetyltransferase
729	 63.72	+1	787121..787798	+	225	99080570	-	TM1040_0729	-	HAD family hydrolase
730	 61.00	0	787842..788300	-	152	99080571	-	TM1040_0730	-	hypothetical protein
731	 61.66	0	788430..789647	+	405	99080572	-	TM1040_0731	-	DegT/DnrJ/EryC1/StrS aminotransferase
732	 59.28	0	789814..790977	+	387	99080573	-	TM1040_0732	-	isovaleryl-CoA dehydrogenase
733	 62.39	0	790985..791335	+	116	99080574	-	TM1040_0733	-	hypothetical protein
734	 60.86	0	791464..792066	-	200	99080575	-	TM1040_0734	-	OmpW
735	 62.75	0	792161..793741	+	526	99080576	-	TM1040_0735	-	AMP-dependent synthetase and ligase
60.41	MEAN

3.16	STD DEV



Last Updated: Dec 04, 2008

Funding for this work was provided by the Peter Wall Institute for Advanced Studies. This service is hosted by the Brinkman Laboratory of the Department of Molecular Biology and Biochemistry at Simon Fraser University.