version 1.0
Silicibacter sp. TM1040, complete genome - 1..3200938 3030 proteins Pos %G+C SD Location Strand Length PID Gene Synonym Code Product 571 58.10 0 608489..608803 - 104 99080412 - TM1040_0571 - sterol-binding 572 61.88 0 608877..609461 + 194 99080413 - TM1040_0572 - tetratricopeptide TPR_2 573 62.40 0 609547..612501 + 984 99080414 - TM1040_0573 - helicase-like 574 58.40 0 612509..612883 + 124 99080415 - TM1040_0574 - RNA-binding S4 575 55.75 -1 612951..613289 + 112 99080416 - TM1040_0575 - 4Fe-4S ferredoxin, iron-sulfur binding 576 57.06 -1 613567..614076 + 169 99080417 - TM1040_0576 - CarD family transcriptional regulator 577 62.02 0 614143..614895 - 250 99080418 - TM1040_0577 - cobalamin-5'-phosphate synthase 578 65.97 +1 614997..616007 + 336 99080419 - TM1040_0578 - nicotinate-nucleotide-dimethylbenzimidazole phosphoribosyltransferase 579 58.84 0 616034..617911 - 625 99080420 - TM1040_0579 - potassium efflux system protein 580 54.66 -1 618069..619292 - 407 99080421 - TM1040_0580 - hypothetical protein 581 53.29 -2 619356..619811 - 151 99080422 - TM1040_0581 - AsnC family transcriptional regulator 582 55.77 -1 619950..621050 + 366 99080423 - TM1040_0582 - 4-hydroxyphenylpyruvate dioxygenase 583 64.16 +1 621175..623808 - 877 99080424 - TM1040_0583 - hypothetical protein 584 60.67 0 624063..624779 + 238 99080425 - TM1040_0584 - hypothetical protein 585 61.41 0 624873..626165 - 430 99080426 - TM1040_0585 - O-acetylhomoserine/O-acetylserine sulfhydrylase 586 59.29 0 626316..627305 - 329 99080427 - TM1040_0586 - hypothetical protein 587 58.90 0 627404..628279 - 291 99080428 - TM1040_0587 - hypothetical protein 588 57.43 0 628389..628832 - 147 99080429 - TM1040_0588 - MaoC-like dehydratase 589 60.39 0 629035..629910 - 291 99080430 - TM1040_0589 - HAD family hydrolase 590 64.32 +1 630062..632194 - 710 99080431 - TM1040_0590 - DEAD/DEAH box helicase-like 591 61.83 0 632483..633289 + 268 99080432 - TM1040_0591 - peptidase M48, Ste24p 592 59.83 0 633408..634328 - 306 99080433 - TM1040_0592 - putative manganese-dependent inorganic pyrophosphatase 593 62.81 0 634464..635525 - 353 99080434 - TM1040_0593 - GumN 594 61.34 0 635522..636592 - 356 99080435 - TM1040_0594 - GumN 595 63.09 0 636662..637360 + 232 99080436 - TM1040_0595 - hypothetical protein 596 57.64 0 637635..637922 + 95 99080437 groES TM1040_0596 - co-chaperonin GroES 597 59.18 0 637983..639626 + 547 99080438 groEL TM1040_0597 - chaperonin GroEL 598 55.12 -1 639694..639996 + 100 99080439 - TM1040_0598 - hypothetical protein 599 62.59 0 640194..640463 + 89 99080440 - TM1040_0599 - hypothetical protein 600 64.21 +1 640633..641526 + 297 99080441 - TM1040_0600 - hypothetical protein 601 62.08 0 641536..642342 + 268 99080442 - TM1040_0601 - lipase, putative 602 60.88 0 642346..643503 + 385 99080443 - TM1040_0602 - amidohydrolase 3 603 60.11 0 643704..644801 - 365 99080444 - TM1040_0603 - phosphoribosylaminoimidazole carboxylase ATPase subunit 604 63.80 +1 644794..645282 - 162 99080445 - TM1040_0604 - phosphoribosylaminoimidazole carboxylase, catalytic subunit 605 61.95 0 645532..646422 + 296 99080446 - TM1040_0605 - phenazine biosynthesis PhzC/PhzF protein 606 56.15 -1 646512..646958 + 148 99080447 - TM1040_0606 - glutathione-dependent formaldehyde-activating, GFA 607 61.02 0 646940..647470 - 176 99080448 - TM1040_0607 - hypothetical protein 608 59.33 0 647574..649058 - 494 99080449 - TM1040_0608 - phosphate transporter 609 63.11 0 649309..649533 - 74 99080450 - TM1040_0609 - hypothetical protein 610 57.00 -1 649537..649950 - 137 99080451 - TM1040_0610 - heat shock protein Hsp20 611 56.44 -1 650146..650370 + 74 99080452 - TM1040_0611 - hypothetical protein 612 59.92 0 650528..652246 - 572 99080453 - TM1040_0612 - bifunctional sulfate adenylyltransferase subunit 1/adenylylsulfate kinase protein 613 60.42 0 652460..654220 - 586 99080454 - TM1040_0613 - adenylate/guanylate cyclase 614 61.57 0 654406..655347 - 313 99080455 - TM1040_0614 - thioredoxin reductase 615 61.68 0 655592..656092 + 166 99080456 - TM1040_0615 - AsnC family transcriptional regulator 616 59.90 0 656123..656890 - 255 99080457 - TM1040_0616 - hypothetical protein 617 55.56 -1 657064..657369 + 101 99080458 - TM1040_0617 - hypothetical protein 618 62.76 0 657574..658341 - 255 99080459 - TM1040_0618 - hypothetical protein 619 63.41 0 658338..659411 - 357 99080460 - TM1040_0619 - hypothetical protein 620 61.50 0 659408..660316 - 302 99080461 - TM1040_0620 - prolipoprotein diacylglyceryl transferase 621 57.95 0 660413..660676 + 87 99080462 - TM1040_0621 - hypothetical protein 622 57.09 -1 661243..661743 + 166 99080463 - TM1040_0622 - hypothetical protein 623 64.83 +1 661804..662619 + 271 99080464 - TM1040_0623 - pyrroline-5-carboxylate reductase 624 60.11 0 662612..662962 + 116 99080465 - TM1040_0624 - secretion chaperone CsaA 625 63.26 0 662962..663930 + 322 99080466 - TM1040_0625 - D-isomer specific 2-hydroxyacid dehydrogenase, NAD-binding 626 59.87 0 664038..664640 - 200 99080467 - TM1040_0626 - thymidine kinase 627 57.36 0 665179..665640 + 153 99080468 - TM1040_0627 - hypothetical protein 628 59.11 0 665754..666878 - 374 99080469 - TM1040_0628 - 3-oxoacyl-(acyl carrier protein) synthase III 629 57.56 0 667095..667577 + 160 99080470 - TM1040_0629 - MarR family transcriptional regulator 630 61.73 0 667574..668647 + 357 99080471 - TM1040_0630 - secretion protein HlyD 631 59.65 0 668659..671709 + 1016 99080472 - TM1040_0631 - acriflavin resistance protein 632 60.51 0 672273..675635 - 1120 99080473 carB TM1040_0632 - carbamoyl phosphate synthase large subunit 633 63.49 0 675784..676980 + 398 99080474 - TM1040_0633 - para-aminobenzoate synthase component I 634 62.54 0 676977..677582 + 201 99080475 - TM1040_0634 - hypothetical protein 635 60.00 0 677748..679532 + 594 99080476 aspS TM1040_0635 - aspartyl-tRNA synthetase 636 61.11 0 680127..680846 - 239 99080477 - TM1040_0636 - response regulator receiver protein 637 56.79 -1 681032..681436 + 134 99080478 - TM1040_0637 - methylmalonyl-CoA epimerase 638 57.97 0 681506..681781 + 91 99080479 - TM1040_0638 - hypothetical protein 639 59.54 0 681912..682865 - 317 99080480 - TM1040_0639 - LysR family transcriptional regulator 640 52.05 -2 683422..683763 - 113 99080481 - TM1040_0640 - hypothetical protein 641 62.86 0 683825..685609 - 594 99080482 - TM1040_0641 - peptidase M24 642 62.35 0 686000..687877 - 625 99080483 - TM1040_0642 - cobalt chelatase, CobT subunit 643 58.66 0 688037..689023 - 328 99080484 - TM1040_0643 - hydrogenobyrinic acid a,c-diamide cobaltochelatase 644 59.33 0 689252..689851 - 199 99080485 - TM1040_0644 - CzcN domain-containing protein 645 61.88 0 690169..690795 - 208 99080486 - TM1040_0645 - heat shock protein DnaJ-like 646 57.65 0 690913..691167 + 84 99080487 - TM1040_0646 - BolA-like protein 647 66.14 +1 691219..691788 - 189 99080488 - TM1040_0647 - hypothetical protein 648 60.34 0 691865..693112 - 415 99080489 - TM1040_0648 - peptidase T 649 62.46 0 693219..694622 - 467 99080490 - TM1040_0649 - hypothetical protein 650 55.97 -1 694800..696089 + 429 99080491 - TM1040_0650 - hypothetical protein 651 61.57 0 696203..698143 + 646 99080492 - TM1040_0651 - AsmA 652 60.19 0 698293..699789 - 498 99080493 - TM1040_0652 - phosphoglucomutase/phosphomannomutase alpha/beta/subunit 653 59.47 0 699813..700646 - 277 99080494 - TM1040_0653 - 2-dehydro-3-deoxyphosphooctonate aldolase 654 61.15 0 700651..702408 - 585 99080495 - TM1040_0654 - capsule polysaccharide export protein-like 655 52.88 -2 702386..703045 - 219 99080496 - TM1040_0655 - ABC transporter related 656 62.35 0 703380..703982 + 200 99080497 - TM1040_0656 - uracil-DNA glycosylase superfamily protein 657 62.25 0 703975..704766 + 263 99080498 - TM1040_0657 - hypothetical protein 658 59.11 0 704912..705784 - 290 99080499 - TM1040_0658 - putative glutathione S-transferase YghU 659 57.41 0 706043..706831 + 262 99080500 - TM1040_0659 - hypothetical protein 660 61.07 0 706831..707241 + 136 99080501 - TM1040_0660 - hypothetical protein 661 58.64 0 707349..707921 + 190 99080502 - TM1040_0661 - hypothetical protein 662 63.45 0 708098..708688 - 196 99080503 - TM1040_0662 - GcrA cell cycle regulator 663 59.39 0 708878..709702 + 274 99080504 - TM1040_0663 - ABC-2 type transporter 664 61.13 0 709699..710691 - 330 99080505 - TM1040_0664 - hypothetical protein 665 61.31 0 710999..712174 + 391 99080506 - TM1040_0665 - bifunctional N-succinyldiaminopimelate-aminotransferase/acetylornithine transaminase protein 666 59.22 0 712251..713177 + 308 99080507 - TM1040_0666 - ornithine carbamoyltransferase 667 61.37 0 713370..714860 - 496 99080508 - TM1040_0667 - phosphate transporter 668 58.76 0 714982..715449 - 155 99080509 - TM1040_0668 - NUDIX hydrolase 669 66.75 +2 715629..718154 - 841 99080510 - TM1040_0669 - ATP-dependent helicase HrpB 670 63.17 0 718401..719402 + 333 99080511 - TM1040_0670 - arginine/ornithine transport system ATPase 60.41 MEAN 3.16 STD DEV
Last Updated: Dec 04, 2008
Funding for this work was provided by the Peter Wall Institute for Advanced Studies. This service is hosted by the Brinkman Laboratory of the Department of Molecular Biology and Biochemistry at Simon Fraser University.
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