version 1.0
Silicibacter sp. TM1040, complete genome - 1..3200938 3030 proteins Pos %G+C SD Location Strand Length PID Gene Synonym Code Product 535 55.67 -1 566278..567795 + 505 99080376 - TM1040_0535 - hypothetical protein 536 60.30 0 567866..568981 - 371 99080377 - TM1040_0536 - alcohol dehydrogenase GroES-like protein 537 56.22 -1 569385..569786 + 133 99080378 - TM1040_0537 - MerR family transcriptional regulator 538 57.18 -1 570587..571387 + 266 99080379 - TM1040_0538 - SARP family transcriptional regulator 539 59.03 0 571387..572250 + 287 99080380 - TM1040_0539 - hypothetical protein 540 63.75 +1 573038..573619 - 193 99080381 - TM1040_0540 - phosphoglycerate mutase 541 63.77 +1 573619..574689 - 356 99080382 - TM1040_0541 - beta-lactamase-like 542 64.17 +1 574699..575739 - 346 99080383 - TM1040_0542 - ABC transporter related 543 61.04 0 575727..577433 - 568 99080384 - TM1040_0543 - binding-protein-dependent transport systems inner membrane component 544 61.71 0 577430..578398 - 322 99080385 - TM1040_0544 - extracellular solute-binding protein 545 61.15 0 578562..579359 + 265 99080386 - TM1040_0545 - DeoR family transcriptional regulator 546 59.52 0 579549..580178 + 209 99080387 - TM1040_0546 - hypothetical protein 547 61.57 0 580200..582749 - 849 99080388 - TM1040_0547 - twin-arginine translocation pathway signal 548 60.72 0 582746..585754 - 1002 99080389 - TM1040_0548 - glycosyl transferase family protein 549 63.11 0 586629..587639 + 336 99080390 - TM1040_0549 - hypothetical protein 550 63.49 0 587652..588155 - 167 99080391 - TM1040_0550 - MarR family transcriptional regulator 551 60.14 0 588383..588934 + 183 99080392 - TM1040_0551 - L-2,4-diaminobutyric acid acetyltransferase 552 59.98 0 588982..590268 + 428 99080393 - TM1040_0552 - diaminobutyrate--2-oxoglutarate aminotransferase 553 54.45 -1 590293..590685 + 130 99080394 ectC TM1040_0553 - L-ectoine synthase 554 59.01 0 590711..592147 + 478 99080395 - TM1040_0554 - aspartate kinase 555 63.31 0 592559..593632 - 357 99080396 - TM1040_0555 - 3-carboxy-cis,cis-muconate cycloisomerase 556 60.79 0 593672..594505 - 277 99080397 - TM1040_0556 - hypothetical protein 557 61.00 0 594515..595132 - 205 99080398 - TM1040_0557 - protocatechuate 3,4-dioxygenase, alpha subunit 558 61.41 0 595135..595857 - 240 99080399 - TM1040_0558 - protocatechuate 3,4-dioxygenase, beta subunit 559 59.26 0 595854..596258 - 134 99080400 - TM1040_0559 - 4-carboxymuconolactone decarboxylase 560 61.85 0 596251..597039 - 262 99080401 - TM1040_0560 - 3-oxoadipate enol-lactonase 561 58.63 0 597039..598208 - 389 99080402 - TM1040_0561 - 4-hydroxybenzoate 3-monooxygenase 562 61.45 0 598290..599228 + 312 99080403 - TM1040_0562 - LysR family transcriptional regulator 563 57.33 0 599575..600474 + 299 99080404 - TM1040_0563 - RNA polymerase factor sigma-32 564 60.70 0 600959..602131 - 390 99080405 - TM1040_0564 - peptidase M19, renal dipeptidase 565 59.39 0 602298..603287 + 329 99080406 - TM1040_0565 - oxidoreductase-like 566 61.11 0 603420..603689 + 89 99080407 - TM1040_0566 - hypothetical protein 567 59.92 0 603693..604196 - 167 99080408 - TM1040_0567 - GCN5-related N-acetyltransferase 568 55.34 -1 604197..605432 - 411 99080409 - TM1040_0568 - hemolysin-type calcium-binding region 569 58.37 0 605508..607328 - 606 99080410 - TM1040_0569 - peptidase M3B, oligoendopeptidase-related clade 3 570 62.66 0 607521..608468 - 315 99080411 - TM1040_0570 - alpha/beta hydrolase fold 571 58.10 0 608489..608803 - 104 99080412 - TM1040_0571 - sterol-binding 572 61.88 0 608877..609461 + 194 99080413 - TM1040_0572 - tetratricopeptide TPR_2 573 62.40 0 609547..612501 + 984 99080414 - TM1040_0573 - helicase-like 574 58.40 0 612509..612883 + 124 99080415 - TM1040_0574 - RNA-binding S4 575 55.75 -1 612951..613289 + 112 99080416 - TM1040_0575 - 4Fe-4S ferredoxin, iron-sulfur binding 576 57.06 -1 613567..614076 + 169 99080417 - TM1040_0576 - CarD family transcriptional regulator 577 62.02 0 614143..614895 - 250 99080418 - TM1040_0577 - cobalamin-5'-phosphate synthase 578 65.97 +1 614997..616007 + 336 99080419 - TM1040_0578 - nicotinate-nucleotide-dimethylbenzimidazole phosphoribosyltransferase 579 58.84 0 616034..617911 - 625 99080420 - TM1040_0579 - potassium efflux system protein 580 54.66 -1 618069..619292 - 407 99080421 - TM1040_0580 - hypothetical protein 581 53.29 -2 619356..619811 - 151 99080422 - TM1040_0581 - AsnC family transcriptional regulator 582 55.77 -1 619950..621050 + 366 99080423 - TM1040_0582 - 4-hydroxyphenylpyruvate dioxygenase 583 64.16 +1 621175..623808 - 877 99080424 - TM1040_0583 - hypothetical protein 584 60.67 0 624063..624779 + 238 99080425 - TM1040_0584 - hypothetical protein 585 61.41 0 624873..626165 - 430 99080426 - TM1040_0585 - O-acetylhomoserine/O-acetylserine sulfhydrylase 586 59.29 0 626316..627305 - 329 99080427 - TM1040_0586 - hypothetical protein 587 58.90 0 627404..628279 - 291 99080428 - TM1040_0587 - hypothetical protein 588 57.43 0 628389..628832 - 147 99080429 - TM1040_0588 - MaoC-like dehydratase 589 60.39 0 629035..629910 - 291 99080430 - TM1040_0589 - HAD family hydrolase 590 64.32 +1 630062..632194 - 710 99080431 - TM1040_0590 - DEAD/DEAH box helicase-like 591 61.83 0 632483..633289 + 268 99080432 - TM1040_0591 - peptidase M48, Ste24p 592 59.83 0 633408..634328 - 306 99080433 - TM1040_0592 - putative manganese-dependent inorganic pyrophosphatase 593 62.81 0 634464..635525 - 353 99080434 - TM1040_0593 - GumN 594 61.34 0 635522..636592 - 356 99080435 - TM1040_0594 - GumN 595 63.09 0 636662..637360 + 232 99080436 - TM1040_0595 - hypothetical protein 596 57.64 0 637635..637922 + 95 99080437 groES TM1040_0596 - co-chaperonin GroES 597 59.18 0 637983..639626 + 547 99080438 groEL TM1040_0597 - chaperonin GroEL 598 55.12 -1 639694..639996 + 100 99080439 - TM1040_0598 - hypothetical protein 599 62.59 0 640194..640463 + 89 99080440 - TM1040_0599 - hypothetical protein 600 64.21 +1 640633..641526 + 297 99080441 - TM1040_0600 - hypothetical protein 601 62.08 0 641536..642342 + 268 99080442 - TM1040_0601 - lipase, putative 602 60.88 0 642346..643503 + 385 99080443 - TM1040_0602 - amidohydrolase 3 603 60.11 0 643704..644801 - 365 99080444 - TM1040_0603 - phosphoribosylaminoimidazole carboxylase ATPase subunit 604 63.80 +1 644794..645282 - 162 99080445 - TM1040_0604 - phosphoribosylaminoimidazole carboxylase, catalytic subunit 605 61.95 0 645532..646422 + 296 99080446 - TM1040_0605 - phenazine biosynthesis PhzC/PhzF protein 606 56.15 -1 646512..646958 + 148 99080447 - TM1040_0606 - glutathione-dependent formaldehyde-activating, GFA 607 61.02 0 646940..647470 - 176 99080448 - TM1040_0607 - hypothetical protein 608 59.33 0 647574..649058 - 494 99080449 - TM1040_0608 - phosphate transporter 609 63.11 0 649309..649533 - 74 99080450 - TM1040_0609 - hypothetical protein 610 57.00 -1 649537..649950 - 137 99080451 - TM1040_0610 - heat shock protein Hsp20 611 56.44 -1 650146..650370 + 74 99080452 - TM1040_0611 - hypothetical protein 612 59.92 0 650528..652246 - 572 99080453 - TM1040_0612 - bifunctional sulfate adenylyltransferase subunit 1/adenylylsulfate kinase protein 613 60.42 0 652460..654220 - 586 99080454 - TM1040_0613 - adenylate/guanylate cyclase 614 61.57 0 654406..655347 - 313 99080455 - TM1040_0614 - thioredoxin reductase 615 61.68 0 655592..656092 + 166 99080456 - TM1040_0615 - AsnC family transcriptional regulator 616 59.90 0 656123..656890 - 255 99080457 - TM1040_0616 - hypothetical protein 617 55.56 -1 657064..657369 + 101 99080458 - TM1040_0617 - hypothetical protein 618 62.76 0 657574..658341 - 255 99080459 - TM1040_0618 - hypothetical protein 619 63.41 0 658338..659411 - 357 99080460 - TM1040_0619 - hypothetical protein 620 61.50 0 659408..660316 - 302 99080461 - TM1040_0620 - prolipoprotein diacylglyceryl transferase 621 57.95 0 660413..660676 + 87 99080462 - TM1040_0621 - hypothetical protein 622 57.09 -1 661243..661743 + 166 99080463 - TM1040_0622 - hypothetical protein 623 64.83 +1 661804..662619 + 271 99080464 - TM1040_0623 - pyrroline-5-carboxylate reductase 624 60.11 0 662612..662962 + 116 99080465 - TM1040_0624 - secretion chaperone CsaA 625 63.26 0 662962..663930 + 322 99080466 - TM1040_0625 - D-isomer specific 2-hydroxyacid dehydrogenase, NAD-binding 626 59.87 0 664038..664640 - 200 99080467 - TM1040_0626 - thymidine kinase 627 57.36 0 665179..665640 + 153 99080468 - TM1040_0627 - hypothetical protein 628 59.11 0 665754..666878 - 374 99080469 - TM1040_0628 - 3-oxoacyl-(acyl carrier protein) synthase III 629 57.56 0 667095..667577 + 160 99080470 - TM1040_0629 - MarR family transcriptional regulator 630 61.73 0 667574..668647 + 357 99080471 - TM1040_0630 - secretion protein HlyD 631 59.65 0 668659..671709 + 1016 99080472 - TM1040_0631 - acriflavin resistance protein 632 60.51 0 672273..675635 - 1120 99080473 carB TM1040_0632 - carbamoyl phosphate synthase large subunit 633 63.49 0 675784..676980 + 398 99080474 - TM1040_0633 - para-aminobenzoate synthase component I 634 62.54 0 676977..677582 + 201 99080475 - TM1040_0634 - hypothetical protein 60.41 MEAN 3.16 STD DEV
Last Updated: Dec 04, 2008
Funding for this work was provided by the Peter Wall Institute for Advanced Studies. This service is hosted by the Brinkman Laboratory of the Department of Molecular Biology and Biochemistry at Simon Fraser University.
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