IslandPathversion 1.0

IslandPath Analysis: Silicibacter sp. TM1040



Each circle in the graphic corresponds to a predicted protein-coding ORF in the genome. Circle colours indicate if an ORF has a higher or lower %G+C than cutoffs you set below --(default is +/- 3.48 of the mean %G+C). Strike lines across the circles represent regions with dinucleotide bias above a pre-determined cutoff. Click on a circle to view a different portion of the table presented below the graph (default is the first 100 ORFs).
A yellow circle indicates its %G+C value is bigger than the high value. A green circle indicates its %G+C value is bigger than the low value and smaller than the high value. A pink circle indicates its %G+C value is smaller than the low value. A strike line across the circles indicates the region has dinucleotide bais above 1 STD DEV. A black verticle bar indicates a transfer RNA gene lies between the two ORFs. A purple verticle bar indicates a ribosomal RNA gene lies between the two ORFs. A deep blue verticle bar indicates both a tRNA and rRNA gene lie between the two ORFs. A black square indicates the dot is annotated as a transposase. A black triangle indicates the dot is annotated as an integrase. Low: High: Mean: 60.41 STD DEV: 3.16
Silicibacter sp. TM1040, complete genome - 1..3200938
3030 proteins
Pos	%G+C	SD	Location	Strand	Length	PID	Gene	Synonym	Code	Product
523	 60.87	0	549000..550034	-	344	99080364	-	TM1040_0523	-	bile acid:sodium symporter
524	 63.14	0	550031..551305	-	424	99080365	-	TM1040_0524	-	major facilitator transporter
525	 59.46	0	551302..552300	-	332	99080366	-	TM1040_0525	-	glyceraldehyde-3-phosphate dehydrogenase
526	 60.53	0	552342..553172	-	276	99080367	-	TM1040_0526	-	ArsR family transcriptional regulator
527	 60.88	0	553735..554442	+	235	99080368	-	TM1040_0527	-	peptidase S1 and S6, chymotrypsin/Hap
528	 60.27	0	554564..555736	-	390	99080369	-	TM1040_0528	-	Type I secretion membrane fusion protein, HlyD
529	 63.19	0	555733..558348	-	871	99080370	-	TM1040_0529	-	ABC transporter related
530	 62.81	0	558345..559640	-	431	99080371	-	TM1040_0530	-	outer membrane efflux protein
531	 60.01	0	559749..562301	-	850	99080372	-	TM1040_0531	-	hypothetical protein
532	 55.61	-1	563004..564938	+	644	99080373	-	TM1040_0532	-	putative serine protein kinase, PrkA
533	 58.33	0	564957..565316	+	119	99080374	-	TM1040_0533	-	hypothetical protein
534	 57.92	0	565370..566272	+	300	99080375	-	TM1040_0534	-	hypothetical protein
535	 55.67	-1	566278..567795	+	505	99080376	-	TM1040_0535	-	hypothetical protein
536	 60.30	0	567866..568981	-	371	99080377	-	TM1040_0536	-	alcohol dehydrogenase GroES-like protein
537	 56.22	-1	569385..569786	+	133	99080378	-	TM1040_0537	-	MerR family transcriptional regulator
538	 57.18	-1	570587..571387	+	266	99080379	-	TM1040_0538	-	SARP family transcriptional regulator
539	 59.03	0	571387..572250	+	287	99080380	-	TM1040_0539	-	hypothetical protein
540	 63.75	+1	573038..573619	-	193	99080381	-	TM1040_0540	-	phosphoglycerate mutase
541	 63.77	+1	573619..574689	-	356	99080382	-	TM1040_0541	-	beta-lactamase-like
542	 64.17	+1	574699..575739	-	346	99080383	-	TM1040_0542	-	ABC transporter related
543	 61.04	0	575727..577433	-	568	99080384	-	TM1040_0543	-	binding-protein-dependent transport systems inner membrane component
544	 61.71	0	577430..578398	-	322	99080385	-	TM1040_0544	-	extracellular solute-binding protein
545	 61.15	0	578562..579359	+	265	99080386	-	TM1040_0545	-	DeoR family transcriptional regulator
546	 59.52	0	579549..580178	+	209	99080387	-	TM1040_0546	-	hypothetical protein
547	 61.57	0	580200..582749	-	849	99080388	-	TM1040_0547	-	twin-arginine translocation pathway signal
548	 60.72	0	582746..585754	-	1002	99080389	-	TM1040_0548	-	glycosyl transferase family protein
549	 63.11	0	586629..587639	+	336	99080390	-	TM1040_0549	-	hypothetical protein
550	 63.49	0	587652..588155	-	167	99080391	-	TM1040_0550	-	MarR family transcriptional regulator
551	 60.14	0	588383..588934	+	183	99080392	-	TM1040_0551	-	L-2,4-diaminobutyric acid acetyltransferase
552	 59.98	0	588982..590268	+	428	99080393	-	TM1040_0552	-	diaminobutyrate--2-oxoglutarate aminotransferase
553	 54.45	-1	590293..590685	+	130	99080394	ectC	TM1040_0553	-	L-ectoine synthase
554	 59.01	0	590711..592147	+	478	99080395	-	TM1040_0554	-	aspartate kinase
555	 63.31	0	592559..593632	-	357	99080396	-	TM1040_0555	-	3-carboxy-cis,cis-muconate cycloisomerase
556	 60.79	0	593672..594505	-	277	99080397	-	TM1040_0556	-	hypothetical protein
557	 61.00	0	594515..595132	-	205	99080398	-	TM1040_0557	-	protocatechuate 3,4-dioxygenase, alpha subunit
558	 61.41	0	595135..595857	-	240	99080399	-	TM1040_0558	-	protocatechuate 3,4-dioxygenase, beta subunit
559	 59.26	0	595854..596258	-	134	99080400	-	TM1040_0559	-	4-carboxymuconolactone decarboxylase
560	 61.85	0	596251..597039	-	262	99080401	-	TM1040_0560	-	3-oxoadipate enol-lactonase
561	 58.63	0	597039..598208	-	389	99080402	-	TM1040_0561	-	4-hydroxybenzoate 3-monooxygenase
562	 61.45	0	598290..599228	+	312	99080403	-	TM1040_0562	-	LysR family transcriptional regulator
563	 57.33	0	599575..600474	+	299	99080404	-	TM1040_0563	-	RNA polymerase factor sigma-32
564	 60.70	0	600959..602131	-	390	99080405	-	TM1040_0564	-	peptidase M19, renal dipeptidase
565	 59.39	0	602298..603287	+	329	99080406	-	TM1040_0565	-	oxidoreductase-like
566	 61.11	0	603420..603689	+	89	99080407	-	TM1040_0566	-	hypothetical protein
567	 59.92	0	603693..604196	-	167	99080408	-	TM1040_0567	-	GCN5-related N-acetyltransferase
568	 55.34	-1	604197..605432	-	411	99080409	-	TM1040_0568	-	hemolysin-type calcium-binding region
569	 58.37	0	605508..607328	-	606	99080410	-	TM1040_0569	-	peptidase M3B, oligoendopeptidase-related clade 3
570	 62.66	0	607521..608468	-	315	99080411	-	TM1040_0570	-	alpha/beta hydrolase fold
571	 58.10	0	608489..608803	-	104	99080412	-	TM1040_0571	-	sterol-binding
572	 61.88	0	608877..609461	+	194	99080413	-	TM1040_0572	-	tetratricopeptide TPR_2
573	 62.40	0	609547..612501	+	984	99080414	-	TM1040_0573	-	helicase-like
574	 58.40	0	612509..612883	+	124	99080415	-	TM1040_0574	-	RNA-binding S4
575	 55.75	-1	612951..613289	+	112	99080416	-	TM1040_0575	-	4Fe-4S ferredoxin, iron-sulfur binding
576	 57.06	-1	613567..614076	+	169	99080417	-	TM1040_0576	-	CarD family transcriptional regulator
577	 62.02	0	614143..614895	-	250	99080418	-	TM1040_0577	-	cobalamin-5'-phosphate synthase
578	 65.97	+1	614997..616007	+	336	99080419	-	TM1040_0578	-	nicotinate-nucleotide-dimethylbenzimidazole phosphoribosyltransferase
579	 58.84	0	616034..617911	-	625	99080420	-	TM1040_0579	-	potassium efflux system protein
580	 54.66	-1	618069..619292	-	407	99080421	-	TM1040_0580	-	hypothetical protein
581	 53.29	-2	619356..619811	-	151	99080422	-	TM1040_0581	-	AsnC family transcriptional regulator
582	 55.77	-1	619950..621050	+	366	99080423	-	TM1040_0582	-	4-hydroxyphenylpyruvate dioxygenase
583	 64.16	+1	621175..623808	-	877	99080424	-	TM1040_0583	-	hypothetical protein
584	 60.67	0	624063..624779	+	238	99080425	-	TM1040_0584	-	hypothetical protein
585	 61.41	0	624873..626165	-	430	99080426	-	TM1040_0585	-	O-acetylhomoserine/O-acetylserine sulfhydrylase
586	 59.29	0	626316..627305	-	329	99080427	-	TM1040_0586	-	hypothetical protein
587	 58.90	0	627404..628279	-	291	99080428	-	TM1040_0587	-	hypothetical protein
588	 57.43	0	628389..628832	-	147	99080429	-	TM1040_0588	-	MaoC-like dehydratase
589	 60.39	0	629035..629910	-	291	99080430	-	TM1040_0589	-	HAD family hydrolase
590	 64.32	+1	630062..632194	-	710	99080431	-	TM1040_0590	-	DEAD/DEAH box helicase-like
591	 61.83	0	632483..633289	+	268	99080432	-	TM1040_0591	-	peptidase M48, Ste24p
592	 59.83	0	633408..634328	-	306	99080433	-	TM1040_0592	-	putative manganese-dependent inorganic pyrophosphatase
593	 62.81	0	634464..635525	-	353	99080434	-	TM1040_0593	-	GumN
594	 61.34	0	635522..636592	-	356	99080435	-	TM1040_0594	-	GumN
595	 63.09	0	636662..637360	+	232	99080436	-	TM1040_0595	-	hypothetical protein
596	 57.64	0	637635..637922	+	95	99080437	groES	TM1040_0596	-	co-chaperonin GroES
597	 59.18	0	637983..639626	+	547	99080438	groEL	TM1040_0597	-	chaperonin GroEL
598	 55.12	-1	639694..639996	+	100	99080439	-	TM1040_0598	-	hypothetical protein
599	 62.59	0	640194..640463	+	89	99080440	-	TM1040_0599	-	hypothetical protein
600	 64.21	+1	640633..641526	+	297	99080441	-	TM1040_0600	-	hypothetical protein
601	 62.08	0	641536..642342	+	268	99080442	-	TM1040_0601	-	lipase, putative
602	 60.88	0	642346..643503	+	385	99080443	-	TM1040_0602	-	amidohydrolase 3
603	 60.11	0	643704..644801	-	365	99080444	-	TM1040_0603	-	phosphoribosylaminoimidazole carboxylase ATPase subunit
604	 63.80	+1	644794..645282	-	162	99080445	-	TM1040_0604	-	phosphoribosylaminoimidazole carboxylase, catalytic subunit
605	 61.95	0	645532..646422	+	296	99080446	-	TM1040_0605	-	phenazine biosynthesis PhzC/PhzF protein
606	 56.15	-1	646512..646958	+	148	99080447	-	TM1040_0606	-	glutathione-dependent formaldehyde-activating, GFA
607	 61.02	0	646940..647470	-	176	99080448	-	TM1040_0607	-	hypothetical protein
608	 59.33	0	647574..649058	-	494	99080449	-	TM1040_0608	-	phosphate transporter
609	 63.11	0	649309..649533	-	74	99080450	-	TM1040_0609	-	hypothetical protein
610	 57.00	-1	649537..649950	-	137	99080451	-	TM1040_0610	-	heat shock protein Hsp20
611	 56.44	-1	650146..650370	+	74	99080452	-	TM1040_0611	-	hypothetical protein
612	 59.92	0	650528..652246	-	572	99080453	-	TM1040_0612	-	bifunctional sulfate adenylyltransferase subunit 1/adenylylsulfate kinase protein
613	 60.42	0	652460..654220	-	586	99080454	-	TM1040_0613	-	adenylate/guanylate cyclase
614	 61.57	0	654406..655347	-	313	99080455	-	TM1040_0614	-	thioredoxin reductase
615	 61.68	0	655592..656092	+	166	99080456	-	TM1040_0615	-	AsnC family transcriptional regulator
616	 59.90	0	656123..656890	-	255	99080457	-	TM1040_0616	-	hypothetical protein
617	 55.56	-1	657064..657369	+	101	99080458	-	TM1040_0617	-	hypothetical protein
618	 62.76	0	657574..658341	-	255	99080459	-	TM1040_0618	-	hypothetical protein
619	 63.41	0	658338..659411	-	357	99080460	-	TM1040_0619	-	hypothetical protein
620	 61.50	0	659408..660316	-	302	99080461	-	TM1040_0620	-	prolipoprotein diacylglyceryl transferase
621	 57.95	0	660413..660676	+	87	99080462	-	TM1040_0621	-	hypothetical protein
622	 57.09	-1	661243..661743	+	166	99080463	-	TM1040_0622	-	hypothetical protein
60.41	MEAN

3.16	STD DEV



Last Updated: Dec 04, 2008

Funding for this work was provided by the Peter Wall Institute for Advanced Studies. This service is hosted by the Brinkman Laboratory of the Department of Molecular Biology and Biochemistry at Simon Fraser University.