version 1.0
Silicibacter sp. TM1040, complete genome - 1..3200938 3030 proteins Pos %G+C SD Location Strand Length PID Gene Synonym Code Product 504 63.37 0 531808..532899 + 363 99080345 hisZ TM1040_0504 - ATP phosphoribosyltransferase regulatory subunit 505 58.15 0 532896..533588 + 230 99080346 hisG TM1040_0505 - ATP phosphoribosyltransferase catalytic subunit 506 59.83 0 533746..534213 - 155 99080347 - TM1040_0506 - hypothetical protein 507 56.06 -1 534367..534696 - 109 99080348 - TM1040_0507 - hypothetical protein 508 63.53 0 534809..535510 + 233 99080349 - TM1040_0508 - hypothetical protein 509 64.40 +1 535543..536205 + 220 99080350 - TM1040_0509 - GntR family transcriptional regulator 510 64.36 +1 536336..537115 + 259 99080351 - TM1040_0510 - Serine O-acetyltransferase 511 61.19 0 537112..538005 + 297 99080352 - TM1040_0511 - hypothetical protein 512 63.86 +1 538014..539153 + 379 99080353 - TM1040_0512 - peptidase M20D, amidohydrolase 513 63.59 +1 539153..540061 + 302 99080354 - TM1040_0513 - LysR family transcriptional regulator 514 63.93 +1 540185..541099 + 304 99080355 - TM1040_0514 - 6-phosphogluconate dehydrogenase, NAD-binding 515 62.57 0 541096..542631 + 511 99080356 - TM1040_0515 - aldehyde dehydrogenase 516 57.18 -1 542752..543573 + 273 99080357 - TM1040_0516 - hypothetical protein 517 59.33 0 543576..544052 + 158 99080358 - TM1040_0517 - hypothetical protein 518 57.92 0 544203..545219 - 338 99080359 nrdF TM1040_0518 - ribonucleotide-diphosphate reductase subunit beta 519 56.96 -1 545281..547413 - 710 99080360 - TM1040_0519 - ribonucleoside-diphosphate reductase class Ib alpha subunit 520 60.99 0 547395..547817 - 140 99080361 - TM1040_0520 - nrdI protein 521 57.66 0 547839..548060 - 73 99080362 - TM1040_0521 - ribonucleoside-diphosphate reductase class Ib glutaredoxin subunit 522 61.07 0 548599..548973 - 124 99080363 - TM1040_0522 - glutathione-dependent formaldehyde-activating, GFA 523 60.87 0 549000..550034 - 344 99080364 - TM1040_0523 - bile acid:sodium symporter 524 63.14 0 550031..551305 - 424 99080365 - TM1040_0524 - major facilitator transporter 525 59.46 0 551302..552300 - 332 99080366 - TM1040_0525 - glyceraldehyde-3-phosphate dehydrogenase 526 60.53 0 552342..553172 - 276 99080367 - TM1040_0526 - ArsR family transcriptional regulator 527 60.88 0 553735..554442 + 235 99080368 - TM1040_0527 - peptidase S1 and S6, chymotrypsin/Hap 528 60.27 0 554564..555736 - 390 99080369 - TM1040_0528 - Type I secretion membrane fusion protein, HlyD 529 63.19 0 555733..558348 - 871 99080370 - TM1040_0529 - ABC transporter related 530 62.81 0 558345..559640 - 431 99080371 - TM1040_0530 - outer membrane efflux protein 531 60.01 0 559749..562301 - 850 99080372 - TM1040_0531 - hypothetical protein 532 55.61 -1 563004..564938 + 644 99080373 - TM1040_0532 - putative serine protein kinase, PrkA 533 58.33 0 564957..565316 + 119 99080374 - TM1040_0533 - hypothetical protein 534 57.92 0 565370..566272 + 300 99080375 - TM1040_0534 - hypothetical protein 535 55.67 -1 566278..567795 + 505 99080376 - TM1040_0535 - hypothetical protein 536 60.30 0 567866..568981 - 371 99080377 - TM1040_0536 - alcohol dehydrogenase GroES-like protein 537 56.22 -1 569385..569786 + 133 99080378 - TM1040_0537 - MerR family transcriptional regulator 538 57.18 -1 570587..571387 + 266 99080379 - TM1040_0538 - SARP family transcriptional regulator 539 59.03 0 571387..572250 + 287 99080380 - TM1040_0539 - hypothetical protein 540 63.75 +1 573038..573619 - 193 99080381 - TM1040_0540 - phosphoglycerate mutase 541 63.77 +1 573619..574689 - 356 99080382 - TM1040_0541 - beta-lactamase-like 542 64.17 +1 574699..575739 - 346 99080383 - TM1040_0542 - ABC transporter related 543 61.04 0 575727..577433 - 568 99080384 - TM1040_0543 - binding-protein-dependent transport systems inner membrane component 544 61.71 0 577430..578398 - 322 99080385 - TM1040_0544 - extracellular solute-binding protein 545 61.15 0 578562..579359 + 265 99080386 - TM1040_0545 - DeoR family transcriptional regulator 546 59.52 0 579549..580178 + 209 99080387 - TM1040_0546 - hypothetical protein 547 61.57 0 580200..582749 - 849 99080388 - TM1040_0547 - twin-arginine translocation pathway signal 548 60.72 0 582746..585754 - 1002 99080389 - TM1040_0548 - glycosyl transferase family protein 549 63.11 0 586629..587639 + 336 99080390 - TM1040_0549 - hypothetical protein 550 63.49 0 587652..588155 - 167 99080391 - TM1040_0550 - MarR family transcriptional regulator 551 60.14 0 588383..588934 + 183 99080392 - TM1040_0551 - L-2,4-diaminobutyric acid acetyltransferase 552 59.98 0 588982..590268 + 428 99080393 - TM1040_0552 - diaminobutyrate--2-oxoglutarate aminotransferase 553 54.45 -1 590293..590685 + 130 99080394 ectC TM1040_0553 - L-ectoine synthase 554 59.01 0 590711..592147 + 478 99080395 - TM1040_0554 - aspartate kinase 555 63.31 0 592559..593632 - 357 99080396 - TM1040_0555 - 3-carboxy-cis,cis-muconate cycloisomerase 556 60.79 0 593672..594505 - 277 99080397 - TM1040_0556 - hypothetical protein 557 61.00 0 594515..595132 - 205 99080398 - TM1040_0557 - protocatechuate 3,4-dioxygenase, alpha subunit 558 61.41 0 595135..595857 - 240 99080399 - TM1040_0558 - protocatechuate 3,4-dioxygenase, beta subunit 559 59.26 0 595854..596258 - 134 99080400 - TM1040_0559 - 4-carboxymuconolactone decarboxylase 560 61.85 0 596251..597039 - 262 99080401 - TM1040_0560 - 3-oxoadipate enol-lactonase 561 58.63 0 597039..598208 - 389 99080402 - TM1040_0561 - 4-hydroxybenzoate 3-monooxygenase 562 61.45 0 598290..599228 + 312 99080403 - TM1040_0562 - LysR family transcriptional regulator 563 57.33 0 599575..600474 + 299 99080404 - TM1040_0563 - RNA polymerase factor sigma-32 564 60.70 0 600959..602131 - 390 99080405 - TM1040_0564 - peptidase M19, renal dipeptidase 565 59.39 0 602298..603287 + 329 99080406 - TM1040_0565 - oxidoreductase-like 566 61.11 0 603420..603689 + 89 99080407 - TM1040_0566 - hypothetical protein 567 59.92 0 603693..604196 - 167 99080408 - TM1040_0567 - GCN5-related N-acetyltransferase 568 55.34 -1 604197..605432 - 411 99080409 - TM1040_0568 - hemolysin-type calcium-binding region 569 58.37 0 605508..607328 - 606 99080410 - TM1040_0569 - peptidase M3B, oligoendopeptidase-related clade 3 570 62.66 0 607521..608468 - 315 99080411 - TM1040_0570 - alpha/beta hydrolase fold 571 58.10 0 608489..608803 - 104 99080412 - TM1040_0571 - sterol-binding 572 61.88 0 608877..609461 + 194 99080413 - TM1040_0572 - tetratricopeptide TPR_2 573 62.40 0 609547..612501 + 984 99080414 - TM1040_0573 - helicase-like 574 58.40 0 612509..612883 + 124 99080415 - TM1040_0574 - RNA-binding S4 575 55.75 -1 612951..613289 + 112 99080416 - TM1040_0575 - 4Fe-4S ferredoxin, iron-sulfur binding 576 57.06 -1 613567..614076 + 169 99080417 - TM1040_0576 - CarD family transcriptional regulator 577 62.02 0 614143..614895 - 250 99080418 - TM1040_0577 - cobalamin-5'-phosphate synthase 578 65.97 +1 614997..616007 + 336 99080419 - TM1040_0578 - nicotinate-nucleotide-dimethylbenzimidazole phosphoribosyltransferase 579 58.84 0 616034..617911 - 625 99080420 - TM1040_0579 - potassium efflux system protein 580 54.66 -1 618069..619292 - 407 99080421 - TM1040_0580 - hypothetical protein 581 53.29 -2 619356..619811 - 151 99080422 - TM1040_0581 - AsnC family transcriptional regulator 582 55.77 -1 619950..621050 + 366 99080423 - TM1040_0582 - 4-hydroxyphenylpyruvate dioxygenase 583 64.16 +1 621175..623808 - 877 99080424 - TM1040_0583 - hypothetical protein 584 60.67 0 624063..624779 + 238 99080425 - TM1040_0584 - hypothetical protein 585 61.41 0 624873..626165 - 430 99080426 - TM1040_0585 - O-acetylhomoserine/O-acetylserine sulfhydrylase 586 59.29 0 626316..627305 - 329 99080427 - TM1040_0586 - hypothetical protein 587 58.90 0 627404..628279 - 291 99080428 - TM1040_0587 - hypothetical protein 588 57.43 0 628389..628832 - 147 99080429 - TM1040_0588 - MaoC-like dehydratase 589 60.39 0 629035..629910 - 291 99080430 - TM1040_0589 - HAD family hydrolase 590 64.32 +1 630062..632194 - 710 99080431 - TM1040_0590 - DEAD/DEAH box helicase-like 591 61.83 0 632483..633289 + 268 99080432 - TM1040_0591 - peptidase M48, Ste24p 592 59.83 0 633408..634328 - 306 99080433 - TM1040_0592 - putative manganese-dependent inorganic pyrophosphatase 593 62.81 0 634464..635525 - 353 99080434 - TM1040_0593 - GumN 594 61.34 0 635522..636592 - 356 99080435 - TM1040_0594 - GumN 595 63.09 0 636662..637360 + 232 99080436 - TM1040_0595 - hypothetical protein 596 57.64 0 637635..637922 + 95 99080437 groES TM1040_0596 - co-chaperonin GroES 597 59.18 0 637983..639626 + 547 99080438 groEL TM1040_0597 - chaperonin GroEL 598 55.12 -1 639694..639996 + 100 99080439 - TM1040_0598 - hypothetical protein 599 62.59 0 640194..640463 + 89 99080440 - TM1040_0599 - hypothetical protein 600 64.21 +1 640633..641526 + 297 99080441 - TM1040_0600 - hypothetical protein 601 62.08 0 641536..642342 + 268 99080442 - TM1040_0601 - lipase, putative 602 60.88 0 642346..643503 + 385 99080443 - TM1040_0602 - amidohydrolase 3 603 60.11 0 643704..644801 - 365 99080444 - TM1040_0603 - phosphoribosylaminoimidazole carboxylase ATPase subunit 60.41 MEAN 3.16 STD DEV
Last Updated: Dec 04, 2008
Funding for this work was provided by the Peter Wall Institute for Advanced Studies. This service is hosted by the Brinkman Laboratory of the Department of Molecular Biology and Biochemistry at Simon Fraser University.
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