version 1.0
Silicibacter sp. TM1040, complete genome - 1..3200938 3030 proteins Pos %G+C SD Location Strand Length PID Gene Synonym Code Product 450 58.87 0 467874..468809 + 311 99080291 - TM1040_0450 - glutathione synthetase 451 64.55 +1 468806..469702 + 298 99080292 - TM1040_0451 - Alpha/beta hydrolase fold-3 452 64.47 +1 469699..471201 - 500 99080293 - TM1040_0452 - Mg chelatase-related protein 453 62.70 0 471312..471992 - 226 99080294 - TM1040_0453 - hypothetical protein 454 60.14 0 472051..472632 - 193 99080295 - TM1040_0454 - phosphoglycerate mutase 455 57.49 0 472629..473249 - 206 99080296 - TM1040_0455 - adenosylcobinamide kinase 456 60.75 0 473334..474212 + 292 99080297 rpoH2 TM1040_0456 - RNA polymerase factor sigma-32 457 63.31 0 474209..475072 + 287 99080298 - TM1040_0457 - hypothetical protein 458 62.95 0 475190..476401 + 403 99080299 - TM1040_0458 - bifunctional phosphopantothenoylcysteine decarboxylase/phosphopantothenate synthase 459 62.40 0 476638..477012 + 124 99080300 - TM1040_0459 - hypothetical protein 460 56.72 -1 477198..479711 + 837 99080301 - TM1040_0460 - MCP methyltransferase, CheR-type 461 61.99 0 479863..480354 + 163 99080302 - TM1040_0461 - deoxyuridine 5'-triphosphate nucleotidohydrolase 462 61.84 0 480351..481427 + 358 99080303 - TM1040_0462 - UBA/THIF-type NAD/FAD binding fold 463 59.47 0 481430..482221 + 263 99080304 - TM1040_0463 - extracellular solute-binding protein 464 60.22 0 482295..483101 + 268 99080305 - TM1040_0464 - amino acid ABC transporter permease 465 60.02 0 483198..485213 + 671 99080306 - TM1040_0465 - peptidyl-dipeptidase Dcp 466 62.24 0 485294..486220 - 308 99080307 - TM1040_0466 - D-isomer specific 2-hydroxyacid dehydrogenase, NAD-binding 467 58.64 0 486217..486627 - 136 99080308 - TM1040_0467 - glyoxalase/bleomycin resistance protein/dioxygenase 468 64.89 +1 486728..487573 + 281 99080309 - TM1040_0468 - LysR family transcriptional regulator 469 60.18 0 487570..488709 - 379 99080310 - TM1040_0469 - rod shape-determining protein RodA 470 61.02 0 488706..490652 - 648 99080311 - TM1040_0470 - peptidoglycan glycosyltransferase 471 60.56 0 490649..491188 - 179 99080312 - TM1040_0471 - putative rod shape-determining protein MreD 472 63.29 0 491181..492128 - 315 99080313 - TM1040_0472 - rod shape-determining protein MreC 473 62.75 0 492184..493230 - 348 99080314 - TM1040_0473 - rod shape-determining protein MreB 474 60.42 0 493430..494182 - 250 99080315 - TM1040_0474 - hypothetical protein 475 60.38 0 494301..495080 + 259 99080316 - TM1040_0475 - hypothetical protein 476 61.69 0 495160..496929 - 589 99080317 - TM1040_0476 - methyl-accepting chemotaxis sensory transducer 477 61.61 0 497149..499365 - 738 99080318 - TM1040_0477 - isocitrate dehydrogenase, NADP-dependent 478 62.18 0 499866..501158 + 430 99080319 - TM1040_0478 - glycosyl transferase, group 1 479 64.68 +1 501173..501775 - 200 99080320 - TM1040_0479 - hypothetical protein 480 62.61 0 501938..502924 + 328 99080321 - TM1040_0480 - glycolate reductase 481 66.14 +1 502866..503246 - 126 99080322 - TM1040_0481 - hypothetical protein 482 62.63 0 503457..504770 + 437 99080323 - TM1040_0482 - gamma-glutamyltransferase 1 483 59.42 0 505027..506433 + 468 99080324 - TM1040_0483 - FAD linked oxidase-like 484 61.04 0 506534..506977 + 147 99080325 - TM1040_0484 - hypothetical protein 485 56.48 -1 506989..507420 - 143 99080326 - TM1040_0485 - glutathione-dependent formaldehyde-activating, GFA 486 60.73 0 507703..510210 + 835 99080327 - TM1040_0486 - FAD dependent oxidoreductase 487 61.49 0 510374..511339 + 321 99080328 - TM1040_0487 - hypothetical protein 488 61.54 0 511342..511809 - 155 99080329 - TM1040_0488 - calcium-binding EF-hand 489 61.16 0 511915..512568 - 217 99080330 - TM1040_0489 - hypothetical protein 490 64.00 +1 512568..513653 - 361 99080331 - TM1040_0490 - FAD dependent oxidoreductase 491 62.69 0 513650..514654 - 334 99080332 - TM1040_0491 - aldo/keto reductase 492 59.93 0 514715..515323 + 202 99080333 - TM1040_0492 - CDP-alcohol phosphatidyltransferase 493 59.42 0 515592..516668 - 358 99080334 - TM1040_0493 - basic membrane lipoprotein 494 61.02 0 516786..517706 - 306 99080335 - TM1040_0494 - inner-membrane translocator 495 59.19 0 517706..518788 - 360 99080336 - TM1040_0495 - inner-membrane translocator 496 61.93 0 518906..520426 - 506 99080337 - TM1040_0496 - ABC transporter related 497 63.35 0 520423..521358 - 311 99080338 - TM1040_0497 - molybdenum cofactor sulfurylase 498 61.35 0 521348..523696 - 782 99080339 - TM1040_0498 - xanthine dehydrogenase, molybdenum binding subunit apoprotein / xanthine oxidase 499 62.61 0 523693..525096 - 467 99080340 - TM1040_0499 - molybdopterin dehydrogenase, FAD-binding 500 58.90 0 525502..529002 + 1166 99080341 dnaE TM1040_0500 - DNA polymerase III subunit alpha 501 58.38 0 529337..529831 - 164 99080342 - TM1040_0501 - hypothetical protein 502 60.00 0 529955..530149 - 64 99080343 - TM1040_0502 - SlyX protein, putative 503 60.94 0 530303..531805 + 500 99080344 hisS TM1040_0503 - histidyl-tRNA synthetase 504 63.37 0 531808..532899 + 363 99080345 hisZ TM1040_0504 - ATP phosphoribosyltransferase regulatory subunit 505 58.15 0 532896..533588 + 230 99080346 hisG TM1040_0505 - ATP phosphoribosyltransferase catalytic subunit 506 59.83 0 533746..534213 - 155 99080347 - TM1040_0506 - hypothetical protein 507 56.06 -1 534367..534696 - 109 99080348 - TM1040_0507 - hypothetical protein 508 63.53 0 534809..535510 + 233 99080349 - TM1040_0508 - hypothetical protein 509 64.40 +1 535543..536205 + 220 99080350 - TM1040_0509 - GntR family transcriptional regulator 510 64.36 +1 536336..537115 + 259 99080351 - TM1040_0510 - Serine O-acetyltransferase 511 61.19 0 537112..538005 + 297 99080352 - TM1040_0511 - hypothetical protein 512 63.86 +1 538014..539153 + 379 99080353 - TM1040_0512 - peptidase M20D, amidohydrolase 513 63.59 +1 539153..540061 + 302 99080354 - TM1040_0513 - LysR family transcriptional regulator 514 63.93 +1 540185..541099 + 304 99080355 - TM1040_0514 - 6-phosphogluconate dehydrogenase, NAD-binding 515 62.57 0 541096..542631 + 511 99080356 - TM1040_0515 - aldehyde dehydrogenase 516 57.18 -1 542752..543573 + 273 99080357 - TM1040_0516 - hypothetical protein 517 59.33 0 543576..544052 + 158 99080358 - TM1040_0517 - hypothetical protein 518 57.92 0 544203..545219 - 338 99080359 nrdF TM1040_0518 - ribonucleotide-diphosphate reductase subunit beta 519 56.96 -1 545281..547413 - 710 99080360 - TM1040_0519 - ribonucleoside-diphosphate reductase class Ib alpha subunit 520 60.99 0 547395..547817 - 140 99080361 - TM1040_0520 - nrdI protein 521 57.66 0 547839..548060 - 73 99080362 - TM1040_0521 - ribonucleoside-diphosphate reductase class Ib glutaredoxin subunit 522 61.07 0 548599..548973 - 124 99080363 - TM1040_0522 - glutathione-dependent formaldehyde-activating, GFA 523 60.87 0 549000..550034 - 344 99080364 - TM1040_0523 - bile acid:sodium symporter 524 63.14 0 550031..551305 - 424 99080365 - TM1040_0524 - major facilitator transporter 525 59.46 0 551302..552300 - 332 99080366 - TM1040_0525 - glyceraldehyde-3-phosphate dehydrogenase 526 60.53 0 552342..553172 - 276 99080367 - TM1040_0526 - ArsR family transcriptional regulator 527 60.88 0 553735..554442 + 235 99080368 - TM1040_0527 - peptidase S1 and S6, chymotrypsin/Hap 528 60.27 0 554564..555736 - 390 99080369 - TM1040_0528 - Type I secretion membrane fusion protein, HlyD 529 63.19 0 555733..558348 - 871 99080370 - TM1040_0529 - ABC transporter related 530 62.81 0 558345..559640 - 431 99080371 - TM1040_0530 - outer membrane efflux protein 531 60.01 0 559749..562301 - 850 99080372 - TM1040_0531 - hypothetical protein 532 55.61 -1 563004..564938 + 644 99080373 - TM1040_0532 - putative serine protein kinase, PrkA 533 58.33 0 564957..565316 + 119 99080374 - TM1040_0533 - hypothetical protein 534 57.92 0 565370..566272 + 300 99080375 - TM1040_0534 - hypothetical protein 535 55.67 -1 566278..567795 + 505 99080376 - TM1040_0535 - hypothetical protein 536 60.30 0 567866..568981 - 371 99080377 - TM1040_0536 - alcohol dehydrogenase GroES-like protein 537 56.22 -1 569385..569786 + 133 99080378 - TM1040_0537 - MerR family transcriptional regulator 538 57.18 -1 570587..571387 + 266 99080379 - TM1040_0538 - SARP family transcriptional regulator 539 59.03 0 571387..572250 + 287 99080380 - TM1040_0539 - hypothetical protein 540 63.75 +1 573038..573619 - 193 99080381 - TM1040_0540 - phosphoglycerate mutase 541 63.77 +1 573619..574689 - 356 99080382 - TM1040_0541 - beta-lactamase-like 542 64.17 +1 574699..575739 - 346 99080383 - TM1040_0542 - ABC transporter related 543 61.04 0 575727..577433 - 568 99080384 - TM1040_0543 - binding-protein-dependent transport systems inner membrane component 544 61.71 0 577430..578398 - 322 99080385 - TM1040_0544 - extracellular solute-binding protein 545 61.15 0 578562..579359 + 265 99080386 - TM1040_0545 - DeoR family transcriptional regulator 546 59.52 0 579549..580178 + 209 99080387 - TM1040_0546 - hypothetical protein 547 61.57 0 580200..582749 - 849 99080388 - TM1040_0547 - twin-arginine translocation pathway signal 548 60.72 0 582746..585754 - 1002 99080389 - TM1040_0548 - glycosyl transferase family protein 549 63.11 0 586629..587639 + 336 99080390 - TM1040_0549 - hypothetical protein 60.41 MEAN 3.16 STD DEV
Last Updated: Dec 04, 2008
Funding for this work was provided by the Peter Wall Institute for Advanced Studies. This service is hosted by the Brinkman Laboratory of the Department of Molecular Biology and Biochemistry at Simon Fraser University.
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