version 1.0
Silicibacter sp. TM1040, complete genome - 1..3200938 3030 proteins Pos %G+C SD Location Strand Length PID Gene Synonym Code Product 399 59.81 0 407651..408277 + 208 99080240 - TM1040_0399 - cytoplasmic chaperone TorD 400 62.96 0 408384..408572 + 62 99080241 - TM1040_0400 - twin-arginine translocation pathway signal 401 60.73 0 408686..411580 + 964 99080242 - TM1040_0401 - formate dehydrogenase alpha subunit 402 59.60 0 411594..412187 + 197 99080243 - TM1040_0402 - 4Fe-4S ferredoxin, iron-sulfur binding 403 60.00 0 412303..413517 + 404 99080244 - TM1040_0403 - formate dehydrogenase gamma subunit 404 62.69 0 413522..414805 + 427 99080245 - TM1040_0404 - cytochrome c, class I 405 58.76 0 414942..416294 + 450 99080246 - TM1040_0405 - two component, sigma54 specific, Fis family transcriptional regulator 406 60.24 0 416325..418301 - 658 99080247 - TM1040_0406 - periplasmic sensor signal transduction histidine kinase 407 60.46 0 418401..419141 - 246 99080248 - TM1040_0407 - short-chain dehydrogenase/reductase SDR 408 59.75 0 419138..419860 - 240 99080249 - TM1040_0408 - short-chain dehydrogenase/reductase SDR 409 58.95 0 419857..420426 - 189 99080250 - TM1040_0409 - hypothetical protein 410 64.04 +1 420423..421640 - 405 99080251 - TM1040_0410 - sodium:galactoside symporter family protein 411 62.25 0 421643..422185 - 180 99080252 - TM1040_0411 - hypothetical protein 412 59.69 0 422175..423335 - 386 99080253 - TM1040_0412 - cyclopropane-fatty-acyl-phospholipid synthase 413 59.10 0 423335..424114 - 259 99080254 - TM1040_0413 - hypothetical protein 414 62.01 0 424111..425442 - 443 99080255 - TM1040_0414 - FAD dependent oxidoreductase 415 62.31 0 425629..426225 + 198 99080256 - TM1040_0415 - RNA polymerase sigma factor RpoE 416 59.43 0 426222..426857 + 211 99080257 - TM1040_0416 - anti-ECFsigma factor, ChrR 417 61.79 0 427011..428015 - 334 99080258 - TM1040_0417 - glyceraldehyde-3-phosphate dehydrogenase 418 59.46 0 428354..430087 + 577 99080259 - TM1040_0418 - alpha amylase, catalytic region 419 53.49 -2 430269..430526 + 85 99080260 - TM1040_0419 - hypothetical protein 420 60.41 0 430753..431982 - 409 99080261 - TM1040_0420 - glycosyltransferase involved in cell wall biogenesis 421 62.56 0 431975..432754 - 259 99080262 - TM1040_0421 - mannosyl-3-phosphoglycerate phosphatase 422 59.61 0 432884..434839 + 651 99080263 - TM1040_0422 - BCCT transporter 423 61.35 0 434944..435714 + 256 99080264 - TM1040_0423 - fumarylacetoacetate (FAA) hydrolase 424 62.45 0 435852..437273 + 473 99080265 - TM1040_0424 - hypothetical protein 425 60.35 0 437482..437877 + 131 99080266 - TM1040_0425 - hypothetical protein 426 62.61 0 437908..439386 - 492 99080267 - TM1040_0426 - mannitol dehydrogenase-like 427 59.14 0 439386..440156 - 256 99080268 - TM1040_0427 - sorbitol dehydrogenase 428 59.10 0 440156..441160 - 334 99080269 - TM1040_0428 - ABC transporter related 429 56.92 -1 441173..442003 - 276 99080270 - TM1040_0429 - binding-protein-dependent transport systems inner membrane component 430 58.13 0 442019..442885 - 288 99080271 - TM1040_0430 - binding-protein-dependent transport systems inner membrane component 431 60.78 0 442988..444295 - 435 99080272 - TM1040_0431 - extracellular solute-binding protein 432 58.14 0 444427..445458 - 343 99080273 - TM1040_0432 - LacI family transcription regulator 433 59.67 0 445657..447987 - 776 99080274 - TM1040_0433 - methyl-accepting chemotaxis sensory transducer 434 60.65 0 448712..451171 - 819 99080275 - TM1040_0434 - FAD dependent oxidoreductase 435 56.42 -1 451273..451926 + 217 99080276 - TM1040_0435 - TetR family transcriptional regulator 436 62.80 0 452191..453096 - 301 99080277 - TM1040_0436 - PaaX-like 437 63.02 0 453126..455156 - 676 99080278 - TM1040_0437 - bifunctional aldehyde dehydrogenase/enoyl-CoA hydratase 438 62.72 0 455317..456102 + 261 99080279 - TM1040_0438 - enoyl-CoA hydratase 439 61.57 0 456106..456537 + 143 99080280 - TM1040_0439 - phenylacetic acid degradation protein PaaD 440 61.56 0 456593..457903 + 436 99080281 - TM1040_0440 - phenylacetate-CoA ligase 441 60.47 0 457910..458506 + 198 99080282 - TM1040_0441 - TetR family transcriptional regulator 442 63.64 +1 458711..458974 + 87 99080283 - TM1040_0442 - 17 kDa surface antigen 443 59.38 0 459119..460147 - 342 99080284 - TM1040_0443 - tryptophanyl-tRNA synthetase 444 59.24 0 460262..460948 + 228 99080285 - TM1040_0444 - rhomboid-like protein 445 62.34 0 460965..462512 - 515 99080286 - TM1040_0445 - integral membrane protein MviN 446 59.62 0 462509..465190 - 893 99080287 - TM1040_0446 - PII uridylyl-transferase 447 62.11 0 465297..466481 - 394 99080288 - TM1040_0447 - extracellular ligand-binding receptor 448 63.43 0 466570..467433 + 287 99080289 - TM1040_0448 - hypothetical protein 449 61.87 0 467439..467813 + 124 99080290 - TM1040_0449 - hypothetical protein 450 58.87 0 467874..468809 + 311 99080291 - TM1040_0450 - glutathione synthetase 451 64.55 +1 468806..469702 + 298 99080292 - TM1040_0451 - Alpha/beta hydrolase fold-3 452 64.47 +1 469699..471201 - 500 99080293 - TM1040_0452 - Mg chelatase-related protein 453 62.70 0 471312..471992 - 226 99080294 - TM1040_0453 - hypothetical protein 454 60.14 0 472051..472632 - 193 99080295 - TM1040_0454 - phosphoglycerate mutase 455 57.49 0 472629..473249 - 206 99080296 - TM1040_0455 - adenosylcobinamide kinase 456 60.75 0 473334..474212 + 292 99080297 rpoH2 TM1040_0456 - RNA polymerase factor sigma-32 457 63.31 0 474209..475072 + 287 99080298 - TM1040_0457 - hypothetical protein 458 62.95 0 475190..476401 + 403 99080299 - TM1040_0458 - bifunctional phosphopantothenoylcysteine decarboxylase/phosphopantothenate synthase 459 62.40 0 476638..477012 + 124 99080300 - TM1040_0459 - hypothetical protein 460 56.72 -1 477198..479711 + 837 99080301 - TM1040_0460 - MCP methyltransferase, CheR-type 461 61.99 0 479863..480354 + 163 99080302 - TM1040_0461 - deoxyuridine 5'-triphosphate nucleotidohydrolase 462 61.84 0 480351..481427 + 358 99080303 - TM1040_0462 - UBA/THIF-type NAD/FAD binding fold 463 59.47 0 481430..482221 + 263 99080304 - TM1040_0463 - extracellular solute-binding protein 464 60.22 0 482295..483101 + 268 99080305 - TM1040_0464 - amino acid ABC transporter permease 465 60.02 0 483198..485213 + 671 99080306 - TM1040_0465 - peptidyl-dipeptidase Dcp 466 62.24 0 485294..486220 - 308 99080307 - TM1040_0466 - D-isomer specific 2-hydroxyacid dehydrogenase, NAD-binding 467 58.64 0 486217..486627 - 136 99080308 - TM1040_0467 - glyoxalase/bleomycin resistance protein/dioxygenase 468 64.89 +1 486728..487573 + 281 99080309 - TM1040_0468 - LysR family transcriptional regulator 469 60.18 0 487570..488709 - 379 99080310 - TM1040_0469 - rod shape-determining protein RodA 470 61.02 0 488706..490652 - 648 99080311 - TM1040_0470 - peptidoglycan glycosyltransferase 471 60.56 0 490649..491188 - 179 99080312 - TM1040_0471 - putative rod shape-determining protein MreD 472 63.29 0 491181..492128 - 315 99080313 - TM1040_0472 - rod shape-determining protein MreC 473 62.75 0 492184..493230 - 348 99080314 - TM1040_0473 - rod shape-determining protein MreB 474 60.42 0 493430..494182 - 250 99080315 - TM1040_0474 - hypothetical protein 475 60.38 0 494301..495080 + 259 99080316 - TM1040_0475 - hypothetical protein 476 61.69 0 495160..496929 - 589 99080317 - TM1040_0476 - methyl-accepting chemotaxis sensory transducer 477 61.61 0 497149..499365 - 738 99080318 - TM1040_0477 - isocitrate dehydrogenase, NADP-dependent 478 62.18 0 499866..501158 + 430 99080319 - TM1040_0478 - glycosyl transferase, group 1 479 64.68 +1 501173..501775 - 200 99080320 - TM1040_0479 - hypothetical protein 480 62.61 0 501938..502924 + 328 99080321 - TM1040_0480 - glycolate reductase 481 66.14 +1 502866..503246 - 126 99080322 - TM1040_0481 - hypothetical protein 482 62.63 0 503457..504770 + 437 99080323 - TM1040_0482 - gamma-glutamyltransferase 1 483 59.42 0 505027..506433 + 468 99080324 - TM1040_0483 - FAD linked oxidase-like 484 61.04 0 506534..506977 + 147 99080325 - TM1040_0484 - hypothetical protein 485 56.48 -1 506989..507420 - 143 99080326 - TM1040_0485 - glutathione-dependent formaldehyde-activating, GFA 486 60.73 0 507703..510210 + 835 99080327 - TM1040_0486 - FAD dependent oxidoreductase 487 61.49 0 510374..511339 + 321 99080328 - TM1040_0487 - hypothetical protein 488 61.54 0 511342..511809 - 155 99080329 - TM1040_0488 - calcium-binding EF-hand 489 61.16 0 511915..512568 - 217 99080330 - TM1040_0489 - hypothetical protein 490 64.00 +1 512568..513653 - 361 99080331 - TM1040_0490 - FAD dependent oxidoreductase 491 62.69 0 513650..514654 - 334 99080332 - TM1040_0491 - aldo/keto reductase 492 59.93 0 514715..515323 + 202 99080333 - TM1040_0492 - CDP-alcohol phosphatidyltransferase 493 59.42 0 515592..516668 - 358 99080334 - TM1040_0493 - basic membrane lipoprotein 494 61.02 0 516786..517706 - 306 99080335 - TM1040_0494 - inner-membrane translocator 495 59.19 0 517706..518788 - 360 99080336 - TM1040_0495 - inner-membrane translocator 496 61.93 0 518906..520426 - 506 99080337 - TM1040_0496 - ABC transporter related 497 63.35 0 520423..521358 - 311 99080338 - TM1040_0497 - molybdenum cofactor sulfurylase 498 61.35 0 521348..523696 - 782 99080339 - TM1040_0498 - xanthine dehydrogenase, molybdenum binding subunit apoprotein / xanthine oxidase 60.41 MEAN 3.16 STD DEV
Last Updated: Dec 04, 2008
Funding for this work was provided by the Peter Wall Institute for Advanced Studies. This service is hosted by the Brinkman Laboratory of the Department of Molecular Biology and Biochemistry at Simon Fraser University.