version 1.0
Silicibacter sp. TM1040, complete genome - 1..3200938 3030 proteins Pos %G+C SD Location Strand Length PID Gene Synonym Code Product 374 58.51 0 383481..383897 - 138 99080215 - TM1040_0374 - glutathione-dependent formaldehyde-activating, GFA 375 66.36 +1 384038..384685 - 215 99080216 - TM1040_0375 - 2-keto-3-deoxy-phosphogluconate aldolase 376 63.02 0 384690..386501 - 603 99080217 - TM1040_0376 - phosphogluconate dehydratase 377 60.88 0 386534..387985 - 483 99080218 - TM1040_0377 - glucose-6-phosphate 1-dehydrogenase 378 61.82 0 388010..389620 - 536 99080219 - TM1040_0378 - glucose-6-phosphate isomerase 379 52.21 -2 389724..390131 - 135 99080220 - TM1040_0379 - hypothetical protein 380 62.15 0 390218..390859 - 213 99080221 - TM1040_0380 - urease accessory protein UreG 381 62.33 0 390856..391500 - 214 99080222 - TM1040_0381 - urease accessory protein UreF 382 63.09 0 391490..392020 - 176 99080223 - TM1040_0382 - UreE urease accessory-like 383 57.89 0 392070..392297 - 75 99080224 - TM1040_0383 - hypothetical protein 384 58.21 0 392436..393050 - 204 99080225 - TM1040_0384 - hypothetical protein 385 61.88 0 393082..394794 - 570 99080226 ureC TM1040_0385 - urease subunit alpha 386 64.05 +1 394907..395212 - 101 99080227 - TM1040_0386 - urease, beta subunit 387 61.72 0 395402..395704 - 100 99080228 - TM1040_0387 - urease, gamma subunit 388 64.88 +1 395726..396619 - 297 99080229 - TM1040_0388 - urease accessory protein UreD 389 60.98 0 396997..398121 + 374 99080230 - TM1040_0389 - L-carnitine dehydratase/bile acid-inducible protein F 390 62.30 0 398118..398918 - 266 99080231 - TM1040_0390 - hypothetical protein 391 61.83 0 399046..401052 + 668 99080232 - TM1040_0391 - peptidase S15 392 58.65 0 401118..401666 - 182 99080233 - TM1040_0392 - hypothetical protein 393 60.38 0 401790..402266 - 158 99080234 - TM1040_0393 - hypothetical protein 394 64.96 +1 402282..402986 - 234 99080235 - TM1040_0394 - hypothetical protein 395 62.16 0 402983..404047 - 354 99080236 - TM1040_0395 - Mrp/NBP35 family protein 396 62.99 0 404143..406101 - 652 99080237 - TM1040_0396 - 4Fe-4S ferredoxin, iron-sulfur binding 397 61.71 0 406357..407001 + 214 99080238 - TM1040_0397 - hypothetical protein 398 64.99 +1 406998..407654 + 218 99080239 - TM1040_0398 - hypothetical protein 399 59.81 0 407651..408277 + 208 99080240 - TM1040_0399 - cytoplasmic chaperone TorD 400 62.96 0 408384..408572 + 62 99080241 - TM1040_0400 - twin-arginine translocation pathway signal 401 60.73 0 408686..411580 + 964 99080242 - TM1040_0401 - formate dehydrogenase alpha subunit 402 59.60 0 411594..412187 + 197 99080243 - TM1040_0402 - 4Fe-4S ferredoxin, iron-sulfur binding 403 60.00 0 412303..413517 + 404 99080244 - TM1040_0403 - formate dehydrogenase gamma subunit 404 62.69 0 413522..414805 + 427 99080245 - TM1040_0404 - cytochrome c, class I 405 58.76 0 414942..416294 + 450 99080246 - TM1040_0405 - two component, sigma54 specific, Fis family transcriptional regulator 406 60.24 0 416325..418301 - 658 99080247 - TM1040_0406 - periplasmic sensor signal transduction histidine kinase 407 60.46 0 418401..419141 - 246 99080248 - TM1040_0407 - short-chain dehydrogenase/reductase SDR 408 59.75 0 419138..419860 - 240 99080249 - TM1040_0408 - short-chain dehydrogenase/reductase SDR 409 58.95 0 419857..420426 - 189 99080250 - TM1040_0409 - hypothetical protein 410 64.04 +1 420423..421640 - 405 99080251 - TM1040_0410 - sodium:galactoside symporter family protein 411 62.25 0 421643..422185 - 180 99080252 - TM1040_0411 - hypothetical protein 412 59.69 0 422175..423335 - 386 99080253 - TM1040_0412 - cyclopropane-fatty-acyl-phospholipid synthase 413 59.10 0 423335..424114 - 259 99080254 - TM1040_0413 - hypothetical protein 414 62.01 0 424111..425442 - 443 99080255 - TM1040_0414 - FAD dependent oxidoreductase 415 62.31 0 425629..426225 + 198 99080256 - TM1040_0415 - RNA polymerase sigma factor RpoE 416 59.43 0 426222..426857 + 211 99080257 - TM1040_0416 - anti-ECFsigma factor, ChrR 417 61.79 0 427011..428015 - 334 99080258 - TM1040_0417 - glyceraldehyde-3-phosphate dehydrogenase 418 59.46 0 428354..430087 + 577 99080259 - TM1040_0418 - alpha amylase, catalytic region 419 53.49 -2 430269..430526 + 85 99080260 - TM1040_0419 - hypothetical protein 420 60.41 0 430753..431982 - 409 99080261 - TM1040_0420 - glycosyltransferase involved in cell wall biogenesis 421 62.56 0 431975..432754 - 259 99080262 - TM1040_0421 - mannosyl-3-phosphoglycerate phosphatase 422 59.61 0 432884..434839 + 651 99080263 - TM1040_0422 - BCCT transporter 423 61.35 0 434944..435714 + 256 99080264 - TM1040_0423 - fumarylacetoacetate (FAA) hydrolase 424 62.45 0 435852..437273 + 473 99080265 - TM1040_0424 - hypothetical protein 425 60.35 0 437482..437877 + 131 99080266 - TM1040_0425 - hypothetical protein 426 62.61 0 437908..439386 - 492 99080267 - TM1040_0426 - mannitol dehydrogenase-like 427 59.14 0 439386..440156 - 256 99080268 - TM1040_0427 - sorbitol dehydrogenase 428 59.10 0 440156..441160 - 334 99080269 - TM1040_0428 - ABC transporter related 429 56.92 -1 441173..442003 - 276 99080270 - TM1040_0429 - binding-protein-dependent transport systems inner membrane component 430 58.13 0 442019..442885 - 288 99080271 - TM1040_0430 - binding-protein-dependent transport systems inner membrane component 431 60.78 0 442988..444295 - 435 99080272 - TM1040_0431 - extracellular solute-binding protein 432 58.14 0 444427..445458 - 343 99080273 - TM1040_0432 - LacI family transcription regulator 433 59.67 0 445657..447987 - 776 99080274 - TM1040_0433 - methyl-accepting chemotaxis sensory transducer 434 60.65 0 448712..451171 - 819 99080275 - TM1040_0434 - FAD dependent oxidoreductase 435 56.42 -1 451273..451926 + 217 99080276 - TM1040_0435 - TetR family transcriptional regulator 436 62.80 0 452191..453096 - 301 99080277 - TM1040_0436 - PaaX-like 437 63.02 0 453126..455156 - 676 99080278 - TM1040_0437 - bifunctional aldehyde dehydrogenase/enoyl-CoA hydratase 438 62.72 0 455317..456102 + 261 99080279 - TM1040_0438 - enoyl-CoA hydratase 439 61.57 0 456106..456537 + 143 99080280 - TM1040_0439 - phenylacetic acid degradation protein PaaD 440 61.56 0 456593..457903 + 436 99080281 - TM1040_0440 - phenylacetate-CoA ligase 441 60.47 0 457910..458506 + 198 99080282 - TM1040_0441 - TetR family transcriptional regulator 442 63.64 +1 458711..458974 + 87 99080283 - TM1040_0442 - 17 kDa surface antigen 443 59.38 0 459119..460147 - 342 99080284 - TM1040_0443 - tryptophanyl-tRNA synthetase 444 59.24 0 460262..460948 + 228 99080285 - TM1040_0444 - rhomboid-like protein 445 62.34 0 460965..462512 - 515 99080286 - TM1040_0445 - integral membrane protein MviN 446 59.62 0 462509..465190 - 893 99080287 - TM1040_0446 - PII uridylyl-transferase 447 62.11 0 465297..466481 - 394 99080288 - TM1040_0447 - extracellular ligand-binding receptor 448 63.43 0 466570..467433 + 287 99080289 - TM1040_0448 - hypothetical protein 449 61.87 0 467439..467813 + 124 99080290 - TM1040_0449 - hypothetical protein 450 58.87 0 467874..468809 + 311 99080291 - TM1040_0450 - glutathione synthetase 451 64.55 +1 468806..469702 + 298 99080292 - TM1040_0451 - Alpha/beta hydrolase fold-3 452 64.47 +1 469699..471201 - 500 99080293 - TM1040_0452 - Mg chelatase-related protein 453 62.70 0 471312..471992 - 226 99080294 - TM1040_0453 - hypothetical protein 454 60.14 0 472051..472632 - 193 99080295 - TM1040_0454 - phosphoglycerate mutase 455 57.49 0 472629..473249 - 206 99080296 - TM1040_0455 - adenosylcobinamide kinase 456 60.75 0 473334..474212 + 292 99080297 rpoH2 TM1040_0456 - RNA polymerase factor sigma-32 457 63.31 0 474209..475072 + 287 99080298 - TM1040_0457 - hypothetical protein 458 62.95 0 475190..476401 + 403 99080299 - TM1040_0458 - bifunctional phosphopantothenoylcysteine decarboxylase/phosphopantothenate synthase 459 62.40 0 476638..477012 + 124 99080300 - TM1040_0459 - hypothetical protein 460 56.72 -1 477198..479711 + 837 99080301 - TM1040_0460 - MCP methyltransferase, CheR-type 461 61.99 0 479863..480354 + 163 99080302 - TM1040_0461 - deoxyuridine 5'-triphosphate nucleotidohydrolase 462 61.84 0 480351..481427 + 358 99080303 - TM1040_0462 - UBA/THIF-type NAD/FAD binding fold 463 59.47 0 481430..482221 + 263 99080304 - TM1040_0463 - extracellular solute-binding protein 464 60.22 0 482295..483101 + 268 99080305 - TM1040_0464 - amino acid ABC transporter permease 465 60.02 0 483198..485213 + 671 99080306 - TM1040_0465 - peptidyl-dipeptidase Dcp 466 62.24 0 485294..486220 - 308 99080307 - TM1040_0466 - D-isomer specific 2-hydroxyacid dehydrogenase, NAD-binding 467 58.64 0 486217..486627 - 136 99080308 - TM1040_0467 - glyoxalase/bleomycin resistance protein/dioxygenase 468 64.89 +1 486728..487573 + 281 99080309 - TM1040_0468 - LysR family transcriptional regulator 469 60.18 0 487570..488709 - 379 99080310 - TM1040_0469 - rod shape-determining protein RodA 470 61.02 0 488706..490652 - 648 99080311 - TM1040_0470 - peptidoglycan glycosyltransferase 471 60.56 0 490649..491188 - 179 99080312 - TM1040_0471 - putative rod shape-determining protein MreD 472 63.29 0 491181..492128 - 315 99080313 - TM1040_0472 - rod shape-determining protein MreC 473 62.75 0 492184..493230 - 348 99080314 - TM1040_0473 - rod shape-determining protein MreB 60.41 MEAN 3.16 STD DEV
Last Updated: Dec 04, 2008
Funding for this work was provided by the Peter Wall Institute for Advanced Studies. This service is hosted by the Brinkman Laboratory of the Department of Molecular Biology and Biochemistry at Simon Fraser University.
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