version 1.0
Silicibacter sp. TM1040, complete genome - 1..3200938 3030 proteins Pos %G+C SD Location Strand Length PID Gene Synonym Code Product 347 58.42 0 353932..355944 + 670 99080188 - TM1040_0347 - TonB-dependent receptor, plug 348 62.55 0 355964..356425 + 153 99080189 - TM1040_0348 - hypothetical protein 349 63.73 +1 356422..357102 + 226 99080190 - TM1040_0349 - MotA/TolQ/ExbB proton channel 350 59.54 0 357102..357494 + 130 99080191 - TM1040_0350 - biopolymer transport protein ExbD/TolR 351 62.37 0 357498..357893 + 131 99080192 - TM1040_0351 - hypothetical protein 352 68.09 +2 357890..358804 + 304 99080193 - TM1040_0352 - TonB-like 353 62.47 0 358801..359538 - 245 99080194 - TM1040_0353 - hypothetical protein 354 58.52 0 359541..360473 - 310 99080195 - TM1040_0354 - LysR family transcriptional regulator 355 61.94 0 360576..361823 + 415 99080196 - TM1040_0355 - D-amino-acid dehydrogenase 356 61.04 0 361863..362840 + 325 99080197 - TM1040_0356 - TRAP dicarboxylate transporter- DctP subunit 357 59.84 0 363053..363667 + 204 99080198 - TM1040_0357 - hypothetical protein 358 59.35 0 363664..364962 + 432 99080199 - TM1040_0358 - TRAP dicarboxylate transporter- DctM subunit 359 61.53 0 365386..368169 + 927 99080200 - TM1040_0359 - methyl-accepting chemotaxis sensory transducer 360 61.74 0 368350..370440 + 696 99080201 - TM1040_0360 - short chain enoyl-CoA hydratase / 3-hydroxyacyl-CoA dehydrogenase 361 62.00 0 370462..371640 + 392 99080202 - TM1040_0361 - Acetyl-CoA C-acyltransferase 362 61.53 0 371829..372626 + 265 99080203 - TM1040_0362 - IclR family transcriptional regulator 363 65.32 +1 372959..373921 + 320 99080204 - TM1040_0363 - glucokinase 364 56.98 -1 374058..374852 + 264 99080205 - TM1040_0364 - hypothetical protein 365 65.66 +1 374933..375625 - 230 99080206 - TM1040_0365 - GntR family transcriptional regulator 366 62.96 0 375616..376452 - 278 99080207 - TM1040_0366 - hypothetical protein 367 62.08 0 376581..377822 - 413 99080208 - TM1040_0367 - ROK domain-containing protein 368 61.06 0 377973..378989 + 338 99080209 - TM1040_0368 - periplasmic binding protein/LacI transcriptional regulator 369 58.12 0 379177..380241 + 354 99080210 - TM1040_0369 - inner-membrane translocator 370 61.15 0 380238..381017 + 259 99080211 - TM1040_0370 - ABC transporter related 371 66.03 +1 381014..381637 + 207 99080212 frcK TM1040_0371 - putative fructose transport system kinase 372 59.31 0 381666..382331 + 221 99080213 - TM1040_0372 - hypothetical protein 373 62.21 0 382535..383410 - 291 99080214 - TM1040_0373 - NAD-dependent epimerase/dehydratase 374 58.51 0 383481..383897 - 138 99080215 - TM1040_0374 - glutathione-dependent formaldehyde-activating, GFA 375 66.36 +1 384038..384685 - 215 99080216 - TM1040_0375 - 2-keto-3-deoxy-phosphogluconate aldolase 376 63.02 0 384690..386501 - 603 99080217 - TM1040_0376 - phosphogluconate dehydratase 377 60.88 0 386534..387985 - 483 99080218 - TM1040_0377 - glucose-6-phosphate 1-dehydrogenase 378 61.82 0 388010..389620 - 536 99080219 - TM1040_0378 - glucose-6-phosphate isomerase 379 52.21 -2 389724..390131 - 135 99080220 - TM1040_0379 - hypothetical protein 380 62.15 0 390218..390859 - 213 99080221 - TM1040_0380 - urease accessory protein UreG 381 62.33 0 390856..391500 - 214 99080222 - TM1040_0381 - urease accessory protein UreF 382 63.09 0 391490..392020 - 176 99080223 - TM1040_0382 - UreE urease accessory-like 383 57.89 0 392070..392297 - 75 99080224 - TM1040_0383 - hypothetical protein 384 58.21 0 392436..393050 - 204 99080225 - TM1040_0384 - hypothetical protein 385 61.88 0 393082..394794 - 570 99080226 ureC TM1040_0385 - urease subunit alpha 386 64.05 +1 394907..395212 - 101 99080227 - TM1040_0386 - urease, beta subunit 387 61.72 0 395402..395704 - 100 99080228 - TM1040_0387 - urease, gamma subunit 388 64.88 +1 395726..396619 - 297 99080229 - TM1040_0388 - urease accessory protein UreD 389 60.98 0 396997..398121 + 374 99080230 - TM1040_0389 - L-carnitine dehydratase/bile acid-inducible protein F 390 62.30 0 398118..398918 - 266 99080231 - TM1040_0390 - hypothetical protein 391 61.83 0 399046..401052 + 668 99080232 - TM1040_0391 - peptidase S15 392 58.65 0 401118..401666 - 182 99080233 - TM1040_0392 - hypothetical protein 393 60.38 0 401790..402266 - 158 99080234 - TM1040_0393 - hypothetical protein 394 64.96 +1 402282..402986 - 234 99080235 - TM1040_0394 - hypothetical protein 395 62.16 0 402983..404047 - 354 99080236 - TM1040_0395 - Mrp/NBP35 family protein 396 62.99 0 404143..406101 - 652 99080237 - TM1040_0396 - 4Fe-4S ferredoxin, iron-sulfur binding 397 61.71 0 406357..407001 + 214 99080238 - TM1040_0397 - hypothetical protein 398 64.99 +1 406998..407654 + 218 99080239 - TM1040_0398 - hypothetical protein 399 59.81 0 407651..408277 + 208 99080240 - TM1040_0399 - cytoplasmic chaperone TorD 400 62.96 0 408384..408572 + 62 99080241 - TM1040_0400 - twin-arginine translocation pathway signal 401 60.73 0 408686..411580 + 964 99080242 - TM1040_0401 - formate dehydrogenase alpha subunit 402 59.60 0 411594..412187 + 197 99080243 - TM1040_0402 - 4Fe-4S ferredoxin, iron-sulfur binding 403 60.00 0 412303..413517 + 404 99080244 - TM1040_0403 - formate dehydrogenase gamma subunit 404 62.69 0 413522..414805 + 427 99080245 - TM1040_0404 - cytochrome c, class I 405 58.76 0 414942..416294 + 450 99080246 - TM1040_0405 - two component, sigma54 specific, Fis family transcriptional regulator 406 60.24 0 416325..418301 - 658 99080247 - TM1040_0406 - periplasmic sensor signal transduction histidine kinase 407 60.46 0 418401..419141 - 246 99080248 - TM1040_0407 - short-chain dehydrogenase/reductase SDR 408 59.75 0 419138..419860 - 240 99080249 - TM1040_0408 - short-chain dehydrogenase/reductase SDR 409 58.95 0 419857..420426 - 189 99080250 - TM1040_0409 - hypothetical protein 410 64.04 +1 420423..421640 - 405 99080251 - TM1040_0410 - sodium:galactoside symporter family protein 411 62.25 0 421643..422185 - 180 99080252 - TM1040_0411 - hypothetical protein 412 59.69 0 422175..423335 - 386 99080253 - TM1040_0412 - cyclopropane-fatty-acyl-phospholipid synthase 413 59.10 0 423335..424114 - 259 99080254 - TM1040_0413 - hypothetical protein 414 62.01 0 424111..425442 - 443 99080255 - TM1040_0414 - FAD dependent oxidoreductase 415 62.31 0 425629..426225 + 198 99080256 - TM1040_0415 - RNA polymerase sigma factor RpoE 416 59.43 0 426222..426857 + 211 99080257 - TM1040_0416 - anti-ECFsigma factor, ChrR 417 61.79 0 427011..428015 - 334 99080258 - TM1040_0417 - glyceraldehyde-3-phosphate dehydrogenase 418 59.46 0 428354..430087 + 577 99080259 - TM1040_0418 - alpha amylase, catalytic region 419 53.49 -2 430269..430526 + 85 99080260 - TM1040_0419 - hypothetical protein 420 60.41 0 430753..431982 - 409 99080261 - TM1040_0420 - glycosyltransferase involved in cell wall biogenesis 421 62.56 0 431975..432754 - 259 99080262 - TM1040_0421 - mannosyl-3-phosphoglycerate phosphatase 422 59.61 0 432884..434839 + 651 99080263 - TM1040_0422 - BCCT transporter 423 61.35 0 434944..435714 + 256 99080264 - TM1040_0423 - fumarylacetoacetate (FAA) hydrolase 424 62.45 0 435852..437273 + 473 99080265 - TM1040_0424 - hypothetical protein 425 60.35 0 437482..437877 + 131 99080266 - TM1040_0425 - hypothetical protein 426 62.61 0 437908..439386 - 492 99080267 - TM1040_0426 - mannitol dehydrogenase-like 427 59.14 0 439386..440156 - 256 99080268 - TM1040_0427 - sorbitol dehydrogenase 428 59.10 0 440156..441160 - 334 99080269 - TM1040_0428 - ABC transporter related 429 56.92 -1 441173..442003 - 276 99080270 - TM1040_0429 - binding-protein-dependent transport systems inner membrane component 430 58.13 0 442019..442885 - 288 99080271 - TM1040_0430 - binding-protein-dependent transport systems inner membrane component 431 60.78 0 442988..444295 - 435 99080272 - TM1040_0431 - extracellular solute-binding protein 432 58.14 0 444427..445458 - 343 99080273 - TM1040_0432 - LacI family transcription regulator 433 59.67 0 445657..447987 - 776 99080274 - TM1040_0433 - methyl-accepting chemotaxis sensory transducer 434 60.65 0 448712..451171 - 819 99080275 - TM1040_0434 - FAD dependent oxidoreductase 435 56.42 -1 451273..451926 + 217 99080276 - TM1040_0435 - TetR family transcriptional regulator 436 62.80 0 452191..453096 - 301 99080277 - TM1040_0436 - PaaX-like 437 63.02 0 453126..455156 - 676 99080278 - TM1040_0437 - bifunctional aldehyde dehydrogenase/enoyl-CoA hydratase 438 62.72 0 455317..456102 + 261 99080279 - TM1040_0438 - enoyl-CoA hydratase 439 61.57 0 456106..456537 + 143 99080280 - TM1040_0439 - phenylacetic acid degradation protein PaaD 440 61.56 0 456593..457903 + 436 99080281 - TM1040_0440 - phenylacetate-CoA ligase 441 60.47 0 457910..458506 + 198 99080282 - TM1040_0441 - TetR family transcriptional regulator 442 63.64 +1 458711..458974 + 87 99080283 - TM1040_0442 - 17 kDa surface antigen 443 59.38 0 459119..460147 - 342 99080284 - TM1040_0443 - tryptophanyl-tRNA synthetase 444 59.24 0 460262..460948 + 228 99080285 - TM1040_0444 - rhomboid-like protein 445 62.34 0 460965..462512 - 515 99080286 - TM1040_0445 - integral membrane protein MviN 446 59.62 0 462509..465190 - 893 99080287 - TM1040_0446 - PII uridylyl-transferase 60.41 MEAN 3.16 STD DEV
Last Updated: Dec 04, 2008
Funding for this work was provided by the Peter Wall Institute for Advanced Studies. This service is hosted by the Brinkman Laboratory of the Department of Molecular Biology and Biochemistry at Simon Fraser University.
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