version 1.0
Silicibacter sp. TM1040, complete genome - 1..3200938 3030 proteins Pos %G+C SD Location Strand Length PID Gene Synonym Code Product 278 61.03 0 284453..284842 + 129 99080119 - TM1040_0278 - 30S ribosomal protein S11 279 57.62 0 284956..285972 + 338 99080120 - TM1040_0279 - DNA-directed RNA polymerase subunit alpha 280 57.28 0 286119..286544 + 141 99080121 rplQ TM1040_0280 - 50S ribosomal protein L17 281 57.43 0 286665..287573 + 302 99080122 - TM1040_0281 - hypothetical protein 282 61.36 0 287589..287927 - 112 99080123 - TM1040_0282 - alkylphosphonate utilization operon protein PhnA 283 59.33 0 288006..288905 - 299 99080124 - TM1040_0283 - NAD-dependent epimerase/dehydratase 284 61.62 0 289070..289723 + 217 99080125 - TM1040_0284 - hypothetical protein 285 64.16 +1 289710..291107 - 465 99080126 - TM1040_0285 - MATE efflux family protein 286 64.57 +1 291466..292560 + 364 99080127 - TM1040_0286 - phospho-2-dehydro-3-deoxyheptonate aldolase 287 62.66 0 292758..294155 + 465 99080128 - TM1040_0287 - peptidase S1C, Do 288 64.86 +1 294157..295488 + 443 99080129 - TM1040_0288 - recombination factor protein RarA 289 65.20 +1 295557..296987 - 476 99080130 - TM1040_0289 - multicopper oxidase, type 3 290 63.66 +1 297078..297542 + 154 99080131 - TM1040_0290 - camphor resistance protein CrcB 291 63.80 +1 297539..298585 + 348 99080132 - TM1040_0291 - ribosomal large subunit pseudouridine synthase C 292 63.83 +1 298582..299250 + 222 99080133 - TM1040_0292 - HAD family hydrolase 293 63.12 0 299318..300022 + 234 99080134 - TM1040_0293 - ATP12 ATPase 294 62.05 0 300335..301351 + 338 99080135 - TM1040_0294 - lysine-arginine-ornithine-binding periplasmic protein 295 57.29 0 301493..302761 + 422 99080136 - TM1040_0295 - amino acid ABC transporter permease 296 58.54 0 302763..304091 + 442 99080137 - TM1040_0296 - amino acid ABC transporter permease 297 56.94 -1 304104..304895 + 263 99080138 - TM1040_0297 - ABC transporter related 298 58.92 0 305059..305484 - 141 99080139 - TM1040_0298 - GCN5-related N-acetyltransferase 299 64.26 +1 305689..306186 - 165 99080140 - TM1040_0299 - putative phosphohistidine phosphatase, SixA 300 62.79 0 306183..306878 - 231 99080141 - TM1040_0300 - hypothetical protein 301 64.00 +1 307007..307867 - 286 99080142 - TM1040_0301 - acetylglutamate kinase 302 63.52 0 308089..308820 + 243 99080143 - TM1040_0302 - short-chain dehydrogenase/reductase SDR 303 64.12 +1 308867..310279 - 470 99080144 - TM1040_0303 - PepSY-associated TM helix 304 70.27 +2 310348..310680 - 110 99080145 - TM1040_0304 - hypothetical protein 305 62.52 0 310715..311365 - 216 99080146 - TM1040_0305 - GTPase EngB 306 64.77 +1 311365..312102 - 245 99080147 - TM1040_0306 - MOSC domain-containing protein 307 61.25 0 312099..313925 - 608 99080148 - TM1040_0307 - putative inner membrane protein translocase component YidC 308 63.07 0 314351..315850 - 499 99080149 - TM1040_0308 - diguanylate cyclase/phosphodiesterase 309 59.12 0 315963..316850 - 295 99080150 - TM1040_0309 - PP-loop 310 60.99 0 316985..317530 + 181 99080151 - TM1040_0310 - hypothetical protein 311 66.28 +1 317527..317787 - 86 99080152 - TM1040_0311 - hypothetical protein 312 63.24 0 317986..318423 - 145 99080153 - TM1040_0312 - ribonuclease P protein component 313 60.74 0 318476..318610 - 44 99080154 rpmH TM1040_0313 - 50S ribosomal protein L34 314 63.69 +1 319077..319814 + 245 99080155 - TM1040_0314 - hypothetical protein 315 63.35 0 319818..321233 + 471 99080156 - TM1040_0315 - pyridine nucleotide-disulphide oxidoreductase dimerisation region 316 62.27 0 321251..322636 + 461 99080157 - TM1040_0316 - periplasmic sensor signal transduction histidine kinase 317 50.28 -2 323531..324073 + 180 99080158 - TM1040_0317 - hypothetical protein 318 57.14 -1 324245..324664 + 139 99080159 - TM1040_0318 - hypothetical protein 319 64.10 +1 324863..325447 + 194 99080160 - TM1040_0319 - TetR family transcriptional regulator 320 59.96 0 325584..326150 + 188 99080161 - TM1040_0320 - carboxymuconolactone decarboxylase 321 61.47 0 326224..326781 + 185 99080162 - TM1040_0321 - redoxin 322 63.00 0 326868..327740 - 290 99080163 - TM1040_0322 - LysR family transcriptional regulator 323 63.53 0 327846..328961 + 371 99080164 - TM1040_0323 - twin-arginine translocation pathway signal 324 63.63 +1 329049..329936 + 295 99080165 - TM1040_0324 - binding-protein-dependent transport systems inner membrane component 325 60.71 0 329940..330761 + 273 99080166 - TM1040_0325 - binding-protein-dependent transport systems inner membrane component 326 63.90 +1 330758..331876 + 372 99080167 - TM1040_0326 - ABC transporter related 327 67.53 +2 331873..333141 + 422 99080168 - TM1040_0327 - amidase 328 62.71 0 333138..334046 + 302 99080169 - TM1040_0328 - polysaccharide deacetylase 329 65.67 +1 334033..334734 + 233 99080170 - TM1040_0329 - hypothetical protein 330 63.53 0 334809..335477 - 222 99080171 - TM1040_0330 - (Acyl-carrier protein) phosphodiesterase 331 66.22 +1 335647..336549 + 300 99080172 - TM1040_0331 - LysR family transcriptional regulator 332 65.85 +1 336588..337442 - 284 99080173 - TM1040_0332 - LysR family transcriptional regulator 333 63.01 0 337542..338690 + 382 99080174 - TM1040_0333 - gamma-butyrobetaine,2-oxoglutarate dioxygenase 334 59.56 0 338687..339277 + 196 99080175 - TM1040_0334 - hypothetical protein 335 61.77 0 339509..339937 - 142 99080176 - TM1040_0335 - hypothetical protein 336 64.10 +1 339939..341264 - 441 99080177 - TM1040_0336 - major facilitator transporter 337 60.54 0 341517..341957 + 146 99080178 - TM1040_0337 - 3-dehydroquinate dehydratase 338 60.23 0 342242..343732 + 496 99080179 - TM1040_0338 - NCS1 nucleoside transporter 339 63.83 +1 343924..344769 + 281 99080180 - TM1040_0339 - hypothetical protein 340 60.28 0 344893..345972 + 359 99080181 - TM1040_0340 - peptidoglycan-binding LysM 341 62.38 0 345984..347057 + 357 99080182 - TM1040_0341 - hypothetical protein 342 59.02 0 347255..349738 + 827 99080183 - TM1040_0342 - multi-sensor hybrid histidine kinase 343 63.73 +1 349883..350665 - 260 99080184 - TM1040_0343 - hemin importer ATP-binding subunit 344 64.37 +1 350662..351750 - 362 99080185 - TM1040_0344 - transport system permease protein 345 64.19 +1 351754..352602 - 282 99080186 - TM1040_0345 - periplasmic binding protein 346 62.59 0 352602..353681 - 359 99080187 - TM1040_0346 - hemin-degrading 347 58.42 0 353932..355944 + 670 99080188 - TM1040_0347 - TonB-dependent receptor, plug 348 62.55 0 355964..356425 + 153 99080189 - TM1040_0348 - hypothetical protein 349 63.73 +1 356422..357102 + 226 99080190 - TM1040_0349 - MotA/TolQ/ExbB proton channel 350 59.54 0 357102..357494 + 130 99080191 - TM1040_0350 - biopolymer transport protein ExbD/TolR 351 62.37 0 357498..357893 + 131 99080192 - TM1040_0351 - hypothetical protein 352 68.09 +2 357890..358804 + 304 99080193 - TM1040_0352 - TonB-like 353 62.47 0 358801..359538 - 245 99080194 - TM1040_0353 - hypothetical protein 354 58.52 0 359541..360473 - 310 99080195 - TM1040_0354 - LysR family transcriptional regulator 355 61.94 0 360576..361823 + 415 99080196 - TM1040_0355 - D-amino-acid dehydrogenase 356 61.04 0 361863..362840 + 325 99080197 - TM1040_0356 - TRAP dicarboxylate transporter- DctP subunit 357 59.84 0 363053..363667 + 204 99080198 - TM1040_0357 - hypothetical protein 358 59.35 0 363664..364962 + 432 99080199 - TM1040_0358 - TRAP dicarboxylate transporter- DctM subunit 359 61.53 0 365386..368169 + 927 99080200 - TM1040_0359 - methyl-accepting chemotaxis sensory transducer 360 61.74 0 368350..370440 + 696 99080201 - TM1040_0360 - short chain enoyl-CoA hydratase / 3-hydroxyacyl-CoA dehydrogenase 361 62.00 0 370462..371640 + 392 99080202 - TM1040_0361 - Acetyl-CoA C-acyltransferase 362 61.53 0 371829..372626 + 265 99080203 - TM1040_0362 - IclR family transcriptional regulator 363 65.32 +1 372959..373921 + 320 99080204 - TM1040_0363 - glucokinase 364 56.98 -1 374058..374852 + 264 99080205 - TM1040_0364 - hypothetical protein 365 65.66 +1 374933..375625 - 230 99080206 - TM1040_0365 - GntR family transcriptional regulator 366 62.96 0 375616..376452 - 278 99080207 - TM1040_0366 - hypothetical protein 367 62.08 0 376581..377822 - 413 99080208 - TM1040_0367 - ROK domain-containing protein 368 61.06 0 377973..378989 + 338 99080209 - TM1040_0368 - periplasmic binding protein/LacI transcriptional regulator 369 58.12 0 379177..380241 + 354 99080210 - TM1040_0369 - inner-membrane translocator 370 61.15 0 380238..381017 + 259 99080211 - TM1040_0370 - ABC transporter related 371 66.03 +1 381014..381637 + 207 99080212 frcK TM1040_0371 - putative fructose transport system kinase 372 59.31 0 381666..382331 + 221 99080213 - TM1040_0372 - hypothetical protein 373 62.21 0 382535..383410 - 291 99080214 - TM1040_0373 - NAD-dependent epimerase/dehydratase 374 58.51 0 383481..383897 - 138 99080215 - TM1040_0374 - glutathione-dependent formaldehyde-activating, GFA 375 66.36 +1 384038..384685 - 215 99080216 - TM1040_0375 - 2-keto-3-deoxy-phosphogluconate aldolase 376 63.02 0 384690..386501 - 603 99080217 - TM1040_0376 - phosphogluconate dehydratase 377 60.88 0 386534..387985 - 483 99080218 - TM1040_0377 - glucose-6-phosphate 1-dehydrogenase 60.41 MEAN 3.16 STD DEV
Last Updated: Dec 04, 2008
Funding for this work was provided by the Peter Wall Institute for Advanced Studies. This service is hosted by the Brinkman Laboratory of the Department of Molecular Biology and Biochemistry at Simon Fraser University.
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