IslandPathversion 1.0

IslandPath Analysis: Silicibacter sp. TM1040



Each circle in the graphic corresponds to a predicted protein-coding ORF in the genome. Circle colours indicate if an ORF has a higher or lower %G+C than cutoffs you set below --(default is +/- 3.48 of the mean %G+C). Strike lines across the circles represent regions with dinucleotide bias above a pre-determined cutoff. Click on a circle to view a different portion of the table presented below the graph (default is the first 100 ORFs).
A yellow circle indicates its %G+C value is bigger than the high value. A green circle indicates its %G+C value is bigger than the low value and smaller than the high value. A pink circle indicates its %G+C value is smaller than the low value. A strike line across the circles indicates the region has dinucleotide bais above 1 STD DEV. A black verticle bar indicates a transfer RNA gene lies between the two ORFs. A purple verticle bar indicates a ribosomal RNA gene lies between the two ORFs. A deep blue verticle bar indicates both a tRNA and rRNA gene lie between the two ORFs. A black square indicates the dot is annotated as a transposase. A black triangle indicates the dot is annotated as an integrase. Low: High: Mean: 60.41 STD DEV: 3.16
Silicibacter sp. TM1040, complete genome - 1..3200938
3030 proteins
Pos	%G+C	SD	Location	Strand	Length	PID	Gene	Synonym	Code	Product
2931	 60.15	0	3100370..3101275	-	301	99082772	-	TM1040_2932	-	NAD-dependent epimerase/dehydratase
2932	 60.69	0	3101671..3102390	+	239	99082773	-	TM1040_2933	-	hypothetical protein
2933	 57.77	0	3102377..3103309	+	310	99082774	-	TM1040_2934	-	periplasmic binding protein
2934	 62.70	0	3103310..3104317	+	335	99082775	-	TM1040_2935	-	transport system permease protein
2935	 61.51	0	3104307..3105140	+	277	99082776	-	TM1040_2936	-	ABC transporter related
2936	 57.56	0	3105098..3107272	-	724	99082777	-	TM1040_2937	-	methyl-accepting chemotaxis sensory transducer
2937	 60.24	0	3107839..3108678	+	279	99082778	-	TM1040_2938	-	OmpA/MotB
2938	 57.84	0	3108809..3110077	+	422	99082779	-	TM1040_2939	-	hypothetical protein
2939	 57.07	-1	3110129..3111577	+	482	99082780	flgK	TM1040_2940	-	flagellar hook-associated protein FlgK
2940	 56.25	-1	3111581..3112588	+	335	99082781	-	TM1040_2941	-	flagellar hook-associated protein FlgL family protein
2941	 58.61	0	3112588..3113691	+	367	99082782	flgI	TM1040_2942	-	flagellar basal body P-ring protein
2942	 58.88	0	3113864..3114184	-	106	99082783	-	TM1040_2943	-	hypothetical protein
2943	 55.82	-1	3114200..3114946	-	248	99082784	fliP	TM1040_2944	-	flagellar biosynthesis protein FliP
2944	 57.58	0	3114943..3115239	-	98	99082785	-	TM1040_2945	-	surface presentation of antigens (SPOA) protein
2945	 54.27	-1	3115232..3115828	-	198	99082786	-	TM1040_2946	-	ABC transporter, ATP-binding protein, flagellar, putative
2946	 58.97	0	3115828..3117543	-	571	99082787	fliF	TM1040_2947	-	flagellar MS-ring protein
2947	 54.86	-1	3117624..3118148	+	174	99082788	-	TM1040_2948	-	flagellar basal body-associated protein FliL
2948	 60.78	0	3118158..3118616	+	152	99082789	-	TM1040_2949	-	hypothetical protein
2949	 58.09	0	3118616..3119233	+	205	99082790	-	TM1040_2950	-	hypothetical protein
2950	 54.14	-1	3119308..3120177	+	289	99082791	-	TM1040_2951	-	flagellar motor protein MotA
2951	 56.60	-1	3120174..3122588	+	804	99082792	-	TM1040_2952	-	hypothetical protein
2952	 57.15	-1	3122923..3125013	+	696	99082793	flhA	TM1040_2953	-	flagellar biosynthesis protein FlhA
2953	 57.05	-1	3125010..3125789	+	259	99082794	-	TM1040_2954	-	flagellar biosynthetic protein FliR
2954	 53.02	-2	3125786..3126877	+	363	99082795	flhB	TM1040_2955	-	flagellar biosynthesis protein FlhB
2955	 53.85	-2	3126889..3127278	+	129	99082796	-	TM1040_2956	-	hypothetical protein
2956	 56.27	-1	3127555..3128064	-	169	99082797	-	TM1040_2957	-	hypothetical protein
2957	 58.81	0	3128076..3128813	-	245	99082798	flgH	TM1040_2958	-	flagellar basal body L-ring protein
2958	 59.47	0	3128813..3129229	-	138	99082799	flgA	TM1040_2959	-	flagellar basal body P-ring biosynthesis protein FlgA
2959	 58.02	0	3129230..3130015	-	261	99082800	flgG	TM1040_2960	-	flagellar basal body rod protein FlgG
2960	 58.30	0	3130025..3130741	-	238	99082801	flgF	TM1040_2961	-	flagellar basal body rod protein FlgF
2961	 52.69	-2	3130741..3131019	-	92	99082802	-	TM1040_2962	-	export protein FliQ
2962	 57.58	0	3131023..3131319	-	98	99082803	fliE	TM1040_2963	-	flagellar hook-basal body protein FliE
2963	 56.49	-1	3131343..3131735	-	130	99082804	flgC	TM1040_2964	-	flagellar basal body rod protein FlgC
2964	 54.36	-1	3131752..3132141	-	129	99082805	flgB	TM1040_2965	-	flagellar basal body rod protein FlgB
2965	 58.77	0	3132230..3133558	+	442	99082806	-	TM1040_2966	-	ATP synthase FliI/YscN
2966	 55.21	-1	3133720..3134007	+	95	99082807	-	TM1040_2967	-	transposase IS3/IS911
2967	 58.74	0	3134061..3134855	+	264	99082808	-	TM1040_2968	-	integrase catalytic subunit
2968	 56.18	-1	3134929..3135195	+	88	99082809	-	TM1040_2969	-	transposase IS3/IS911
2969	 59.40	0	3135228..3136025	+	265	99082810	-	TM1040_2970	-	integrase catalytic subunit
2970	 53.71	-2	3136295..3138247	-	650	99082811	-	TM1040_2971	-	hypothetical protein
2971	 58.02	0	3138244..3138648	-	134	99082812	flbT	TM1040_2972	-	flagellar biosynthesis repressor FlbT
2972	 55.38	-1	3138651..3139022	-	123	99082813	flaF	TM1040_2973	-	flagellar biosynthesis regulatory protein FlaF
2973	 55.83	-1	3139109..3139957	-	282	99082814	-	TM1040_2974	-	flagellin-like
2974	 55.83	-1	3140173..3140541	-	122	99082815	-	TM1040_2975	-	hypothetical protein
2975	 59.79	0	3140538..3140828	-	96	99082816	-	TM1040_2976	-	flagellar protein FlgJ, putative
2976	 59.29	0	3140954..3142540	+	528	99082817	-	TM1040_2977	-	hypothetical protein
2977	 56.90	-1	3142545..3143240	+	231	99082818	flgD	TM1040_2978	-	flagellar basal body rod modification protein
2978	 61.13	0	3143290..3144138	+	282	99082819	-	TM1040_2979	-	aminoglycoside phosphotransferase
2979	 60.09	0	3144135..3145442	-	435	99082820	-	TM1040_2980	-	FAD dependent oxidoreductase
2980	 58.00	0	3145439..3146257	-	272	99082821	-	TM1040_2981	-	binding-protein-dependent transport systems inner membrane component
2981	 56.35	-1	3146254..3147135	-	293	99082822	-	TM1040_2982	-	binding-protein-dependent transport systems inner membrane component
2982	 57.48	0	3147135..3148331	-	398	99082823	-	TM1040_2983	-	spermidine/putrescine ABC transporter ATP-binding subunit
2983	 57.48	0	3148365..3149453	-	362	99082824	-	TM1040_2984	-	extracellular solute-binding protein
2984	 57.83	0	3149540..3150286	+	248	99082825	-	TM1040_2985	-	GntR family transcriptional regulator
2985	 58.15	0	3150350..3151747	+	465	99082826	-	TM1040_2986	-	putative aminotransferase
2986	 59.40	0	3152051..3153151	+	366	99082827	-	TM1040_2987	-	spermidine/putrescine ABC transporter ATP-binding subunit
2987	 60.70	0	3153256..3154362	+	368	99082828	-	TM1040_2988	-	polyamine ABC trasnporter, periplasmic polyamine-binding protein
2988	 58.73	0	3154473..3156098	+	541	99082829	-	TM1040_2989	-	binding-protein-dependent transport systems inner membrane component
2989	 58.16	0	3156106..3157281	+	391	99082830	-	TM1040_2990	-	binding-protein-dependent transport systems inner membrane component
2990	 59.28	0	3157346..3158713	-	455	99082831	-	TM1040_2991	-	lytic murein transglycosylase
2991	 57.84	0	3158821..3159579	-	252	99082832	-	TM1040_2992	-	helix-turn-helix, type 11
2992	 60.36	0	3159600..3160313	+	237	99082833	-	TM1040_2993	-	hypothetical protein
2993	 59.27	0	3160462..3162747	-	761	99082834	-	TM1040_2994	-	RNAse R
2994	 58.39	0	3162863..3163285	-	140	99082835	-	TM1040_2995	-	GCN5-related N-acetyltransferase
2995	 59.25	0	3163282..3164427	-	381	99082836	-	TM1040_2996	-	succinyl-diaminopimelate desuccinylase
2996	 62.30	0	3164896..3165993	+	365	99082837	-	TM1040_2997	-	hypothetical protein
2997	 57.09	-1	3166064..3167128	+	354	99082838	-	TM1040_2998	-	extracellular solute-binding protein
2998	 60.66	0	3167180..3167545	-	121	99082839	-	TM1040_2999	-	hypothetical protein
2999	 56.99	-1	3167703..3169283	+	526	99082840	-	TM1040_3000	-	hypothetical protein
3000	 61.31	0	3169277..3169930	-	217	99082841	-	TM1040_3001	-	GntR family transcriptional regulator
3001	 60.64	0	3170058..3170588	+	176	99082842	-	TM1040_3002	-	hypothetical protein
3002	 61.90	0	3170563..3171927	-	454	99082843	-	TM1040_3003	-	N-formimino-L-glutamate deiminase
3003	 62.89	0	3172003..3173220	+	405	99082844	-	TM1040_3004	-	imidazolonepropionase
3004	 64.24	+1	3173217..3174740	+	507	99082845	-	TM1040_3005	-	histidine ammonia-lyase
3005	 60.49	0	3174737..3175513	+	258	99082846	-	TM1040_3006	-	N-formylglutamate amidohydrolase
3006	 60.21	0	3175510..3177198	+	562	99082847	-	TM1040_3007	-	urocanate hydratase
3007	 55.13	-1	3177254..3177643	-	129	99082848	-	TM1040_3008	-	glyoxalase/bleomycin resistance protein/dioxygenase
3008	 60.02	0	3177816..3178643	-	275	161899026	dapD	TM1040_3009	-	2,3,4,5-tetrahydropyridine-2-carboxylate N-succinyltransferase
3009	 61.90	0	3178764..3179393	-	209	99082850	-	TM1040_3010	-	GntR family transcriptional regulator
3010	 60.27	0	3179412..3180365	-	317	99082851	-	TM1040_3011	-	threonine dehydratase
3011	 59.01	0	3180522..3181370	+	282	99082852	-	TM1040_3012	-	hypothetical protein
3012	 57.35	0	3181566..3181769	-	67	99082853	-	TM1040_3013	-	hypothetical protein
3013	 57.71	0	3181937..3183130	-	397	99082854	-	TM1040_3014	-	hypothetical protein
3014	 60.66	0	3183354..3183902	-	182	99082855	-	TM1040_3015	-	hypothetical protein
3015	 60.81	0	3184117..3185124	+	335	99082856	-	TM1040_3016	-	L-asparaginase II
3016	 56.70	-1	3185138..3185458	-	106	99082857	-	TM1040_3017	-	hypothetical protein
3017	 59.29	0	3185545..3186303	-	252	99082858	-	TM1040_3018	-	hypothetical protein
3018	 61.19	0	3186312..3187187	-	291	99082859	-	TM1040_3019	-	phosphoserine phosphatase
3019	 60.65	0	3187424..3188569	+	381	99082860	-	TM1040_3020	-	phosphoserine aminotransferase
3020	 58.21	0	3188663..3190258	+	531	99082861	-	TM1040_3021	-	D-3-phosphoglycerate dehydrogenase
3021	 59.46	0	3190437..3191171	+	244	99082862	-	TM1040_3022	-	bis(5'nucleosyl)-tetraphosphatase, ApaH
3022	 58.83	0	3191378..3192424	-	348	99082863	tdh	TM1040_3023	-	L-threonine 3-dehydrogenase
3023	 58.57	0	3192426..3193610	-	394	99082864	-	TM1040_3024	-	2-amino-3-ketobutyrate coenzyme A ligase
3024	 61.55	0	3193775..3194341	-	188	99082865	-	TM1040_3025	-	XRE family transcriptional regulator
3025	 59.86	0	3194450..3195625	+	391	99082866	-	TM1040_3026	-	beta-ketothiolase
3026	 60.45	0	3195735..3197261	-	508	99082867	-	TM1040_3027	-	2-octaprenylphenol hydroxylase
3027	 54.58	-1	3197265..3198017	-	250	99082868	-	TM1040_3028	-	demethylmenaquinone methyltransferase / 2-octaprenyl-6-methoxy-1,4-benzoquinone methylase
3028	 57.16	-1	3198104..3198955	+	283	99082869	-	TM1040_3029	-	formamidopyrimidine-DNA glycosylase / DNA-(apurinic or apyrimidinic site) lyase
3029	 57.01	-1	3199021..3199797	+	258	99082870	-	TM1040_3030	-	short chain enoyl-CoA hydratase
3030	 56.82	-1	3200122..3200385	+	87	99082871	rpsT	TM1040_3031	-	30S ribosomal protein S20
60.41	MEAN

3.16	STD DEV



Last Updated: Dec 04, 2008

Funding for this work was provided by the Peter Wall Institute for Advanced Studies. This service is hosted by the Brinkman Laboratory of the Department of Molecular Biology and Biochemistry at Simon Fraser University.