version 1.0
Silicibacter sp. TM1040, complete genome - 1..3200938 3030 proteins Pos %G+C SD Location Strand Length PID Gene Synonym Code Product 253 53.41 -2 269781..270059 + 92 99080094 rpsS TM1040_0253 - 30S ribosomal protein S19 254 57.74 0 270063..270443 + 126 99080095 rplV TM1040_0254 - 50S ribosomal protein L22 255 59.58 0 270443..271162 + 239 99080096 rpsC TM1040_0255 - 30S ribosomal protein S3 256 57.73 0 271175..271588 + 137 99080097 rplP TM1040_0256 - 50S ribosomal protein L16 257 58.00 0 271848..272147 + 99 99080098 - TM1040_0257 - hypothetical protein 258 59.21 0 272252..272962 + 236 99080099 - TM1040_0258 - extracellular solute-binding protein 259 59.90 0 273110..273730 + 206 99080100 - TM1040_0259 - hypothetical protein 260 62.44 0 273804..274844 + 346 99080101 - TM1040_0260 - succinylglutamate desuccinylase/aspartoacylase 261 60.16 0 274857..275486 - 209 99080102 - TM1040_0261 - hypothetical protein 262 54.23 -1 275778..275978 + 66 99080103 - TM1040_0262 - 50S ribosomal protein L29 263 53.68 -2 275991..276221 + 76 99080104 rpsQ TM1040_0263 - 30S ribosomal protein S17 264 56.37 -1 276322..276690 + 122 99080105 rplN TM1040_0264 - 50S ribosomal protein L14 265 60.46 0 276690..276995 + 101 99080106 rplX TM1040_0265 - 50S ribosomal protein L24 266 57.27 0 276995..277558 + 187 99080107 rplE TM1040_0266 - 50S ribosomal protein L5 267 57.52 0 277577..277882 + 101 99080108 rpsN TM1040_0267 - 30S ribosomal protein S14 268 59.03 0 277895..278287 + 130 99080109 rpsH TM1040_0268 - 30S ribosomal protein S8 269 59.18 0 278303..278836 + 177 99080110 rplF TM1040_0269 - 50S ribosomal protein L6 270 56.39 -1 278848..279207 + 119 99080111 rplR TM1040_0270 - 50S ribosomal protein L18 271 60.11 0 279375..279938 + 187 99080112 rpsE TM1040_0271 - 30S ribosomal protein S5 272 58.73 0 279951..280139 + 62 99080113 rpmD TM1040_0272 - 50S ribosomal protein L30 273 60.19 0 280364..280579 + 71 99080114 - TM1040_0273 - hypothetical protein 274 61.15 0 281136..281606 + 156 99080115 rplO TM1040_0274 - 50S ribosomal protein L15 275 57.88 0 281717..283081 + 454 99080116 secY TM1040_0275 - preprotein translocase subunit SecY 276 61.51 0 283078..283659 + 193 99080117 - TM1040_0276 - adenylate kinase 277 59.62 0 284068..284436 + 122 99080118 rpsM TM1040_0277 - 30S ribosomal protein S13 278 61.03 0 284453..284842 + 129 99080119 - TM1040_0278 - 30S ribosomal protein S11 279 57.62 0 284956..285972 + 338 99080120 - TM1040_0279 - DNA-directed RNA polymerase subunit alpha 280 57.28 0 286119..286544 + 141 99080121 rplQ TM1040_0280 - 50S ribosomal protein L17 281 57.43 0 286665..287573 + 302 99080122 - TM1040_0281 - hypothetical protein 282 61.36 0 287589..287927 - 112 99080123 - TM1040_0282 - alkylphosphonate utilization operon protein PhnA 283 59.33 0 288006..288905 - 299 99080124 - TM1040_0283 - NAD-dependent epimerase/dehydratase 284 61.62 0 289070..289723 + 217 99080125 - TM1040_0284 - hypothetical protein 285 64.16 +1 289710..291107 - 465 99080126 - TM1040_0285 - MATE efflux family protein 286 64.57 +1 291466..292560 + 364 99080127 - TM1040_0286 - phospho-2-dehydro-3-deoxyheptonate aldolase 287 62.66 0 292758..294155 + 465 99080128 - TM1040_0287 - peptidase S1C, Do 288 64.86 +1 294157..295488 + 443 99080129 - TM1040_0288 - recombination factor protein RarA 289 65.20 +1 295557..296987 - 476 99080130 - TM1040_0289 - multicopper oxidase, type 3 290 63.66 +1 297078..297542 + 154 99080131 - TM1040_0290 - camphor resistance protein CrcB 291 63.80 +1 297539..298585 + 348 99080132 - TM1040_0291 - ribosomal large subunit pseudouridine synthase C 292 63.83 +1 298582..299250 + 222 99080133 - TM1040_0292 - HAD family hydrolase 293 63.12 0 299318..300022 + 234 99080134 - TM1040_0293 - ATP12 ATPase 294 62.05 0 300335..301351 + 338 99080135 - TM1040_0294 - lysine-arginine-ornithine-binding periplasmic protein 295 57.29 0 301493..302761 + 422 99080136 - TM1040_0295 - amino acid ABC transporter permease 296 58.54 0 302763..304091 + 442 99080137 - TM1040_0296 - amino acid ABC transporter permease 297 56.94 -1 304104..304895 + 263 99080138 - TM1040_0297 - ABC transporter related 298 58.92 0 305059..305484 - 141 99080139 - TM1040_0298 - GCN5-related N-acetyltransferase 299 64.26 +1 305689..306186 - 165 99080140 - TM1040_0299 - putative phosphohistidine phosphatase, SixA 300 62.79 0 306183..306878 - 231 99080141 - TM1040_0300 - hypothetical protein 301 64.00 +1 307007..307867 - 286 99080142 - TM1040_0301 - acetylglutamate kinase 302 63.52 0 308089..308820 + 243 99080143 - TM1040_0302 - short-chain dehydrogenase/reductase SDR 303 64.12 +1 308867..310279 - 470 99080144 - TM1040_0303 - PepSY-associated TM helix 304 70.27 +2 310348..310680 - 110 99080145 - TM1040_0304 - hypothetical protein 305 62.52 0 310715..311365 - 216 99080146 - TM1040_0305 - GTPase EngB 306 64.77 +1 311365..312102 - 245 99080147 - TM1040_0306 - MOSC domain-containing protein 307 61.25 0 312099..313925 - 608 99080148 - TM1040_0307 - putative inner membrane protein translocase component YidC 308 63.07 0 314351..315850 - 499 99080149 - TM1040_0308 - diguanylate cyclase/phosphodiesterase 309 59.12 0 315963..316850 - 295 99080150 - TM1040_0309 - PP-loop 310 60.99 0 316985..317530 + 181 99080151 - TM1040_0310 - hypothetical protein 311 66.28 +1 317527..317787 - 86 99080152 - TM1040_0311 - hypothetical protein 312 63.24 0 317986..318423 - 145 99080153 - TM1040_0312 - ribonuclease P protein component 313 60.74 0 318476..318610 - 44 99080154 rpmH TM1040_0313 - 50S ribosomal protein L34 314 63.69 +1 319077..319814 + 245 99080155 - TM1040_0314 - hypothetical protein 315 63.35 0 319818..321233 + 471 99080156 - TM1040_0315 - pyridine nucleotide-disulphide oxidoreductase dimerisation region 316 62.27 0 321251..322636 + 461 99080157 - TM1040_0316 - periplasmic sensor signal transduction histidine kinase 317 50.28 -2 323531..324073 + 180 99080158 - TM1040_0317 - hypothetical protein 318 57.14 -1 324245..324664 + 139 99080159 - TM1040_0318 - hypothetical protein 319 64.10 +1 324863..325447 + 194 99080160 - TM1040_0319 - TetR family transcriptional regulator 320 59.96 0 325584..326150 + 188 99080161 - TM1040_0320 - carboxymuconolactone decarboxylase 321 61.47 0 326224..326781 + 185 99080162 - TM1040_0321 - redoxin 322 63.00 0 326868..327740 - 290 99080163 - TM1040_0322 - LysR family transcriptional regulator 323 63.53 0 327846..328961 + 371 99080164 - TM1040_0323 - twin-arginine translocation pathway signal 324 63.63 +1 329049..329936 + 295 99080165 - TM1040_0324 - binding-protein-dependent transport systems inner membrane component 325 60.71 0 329940..330761 + 273 99080166 - TM1040_0325 - binding-protein-dependent transport systems inner membrane component 326 63.90 +1 330758..331876 + 372 99080167 - TM1040_0326 - ABC transporter related 327 67.53 +2 331873..333141 + 422 99080168 - TM1040_0327 - amidase 328 62.71 0 333138..334046 + 302 99080169 - TM1040_0328 - polysaccharide deacetylase 329 65.67 +1 334033..334734 + 233 99080170 - TM1040_0329 - hypothetical protein 330 63.53 0 334809..335477 - 222 99080171 - TM1040_0330 - (Acyl-carrier protein) phosphodiesterase 331 66.22 +1 335647..336549 + 300 99080172 - TM1040_0331 - LysR family transcriptional regulator 332 65.85 +1 336588..337442 - 284 99080173 - TM1040_0332 - LysR family transcriptional regulator 333 63.01 0 337542..338690 + 382 99080174 - TM1040_0333 - gamma-butyrobetaine,2-oxoglutarate dioxygenase 334 59.56 0 338687..339277 + 196 99080175 - TM1040_0334 - hypothetical protein 335 61.77 0 339509..339937 - 142 99080176 - TM1040_0335 - hypothetical protein 336 64.10 +1 339939..341264 - 441 99080177 - TM1040_0336 - major facilitator transporter 337 60.54 0 341517..341957 + 146 99080178 - TM1040_0337 - 3-dehydroquinate dehydratase 338 60.23 0 342242..343732 + 496 99080179 - TM1040_0338 - NCS1 nucleoside transporter 339 63.83 +1 343924..344769 + 281 99080180 - TM1040_0339 - hypothetical protein 340 60.28 0 344893..345972 + 359 99080181 - TM1040_0340 - peptidoglycan-binding LysM 341 62.38 0 345984..347057 + 357 99080182 - TM1040_0341 - hypothetical protein 342 59.02 0 347255..349738 + 827 99080183 - TM1040_0342 - multi-sensor hybrid histidine kinase 343 63.73 +1 349883..350665 - 260 99080184 - TM1040_0343 - hemin importer ATP-binding subunit 344 64.37 +1 350662..351750 - 362 99080185 - TM1040_0344 - transport system permease protein 345 64.19 +1 351754..352602 - 282 99080186 - TM1040_0345 - periplasmic binding protein 346 62.59 0 352602..353681 - 359 99080187 - TM1040_0346 - hemin-degrading 347 58.42 0 353932..355944 + 670 99080188 - TM1040_0347 - TonB-dependent receptor, plug 348 62.55 0 355964..356425 + 153 99080189 - TM1040_0348 - hypothetical protein 349 63.73 +1 356422..357102 + 226 99080190 - TM1040_0349 - MotA/TolQ/ExbB proton channel 350 59.54 0 357102..357494 + 130 99080191 - TM1040_0350 - biopolymer transport protein ExbD/TolR 351 62.37 0 357498..357893 + 131 99080192 - TM1040_0351 - hypothetical protein 352 68.09 +2 357890..358804 + 304 99080193 - TM1040_0352 - TonB-like 60.41 MEAN 3.16 STD DEV
Last Updated: Dec 04, 2008
Funding for this work was provided by the Peter Wall Institute for Advanced Studies. This service is hosted by the Brinkman Laboratory of the Department of Molecular Biology and Biochemistry at Simon Fraser University.