version 1.0
Silicibacter sp. TM1040, complete genome - 1..3200938 3030 proteins Pos %G+C SD Location Strand Length PID Gene Synonym Code Product 2915 56.81 -1 3084178..3085029 - 283 99082756 - TM1040_2916 - PpiC-type peptidyl-prolyl cis-trans isomerase 2916 58.59 0 3085207..3087894 + 895 99082757 - TM1040_2917 - preprotein translocase subunit SecA 2917 58.08 0 3088030..3088926 + 298 99082758 - TM1040_2918 - hypothetical protein 2918 60.55 0 3088950..3090503 + 517 99082759 - TM1040_2919 - OmpA/MotB 2919 60.58 0 3090662..3092599 - 645 99082760 - TM1040_2920 - 1-deoxy-D-xylulose-5-phosphate synthase 2920 61.23 0 3092630..3093493 - 287 99082761 - TM1040_2921 - farnesyl-diphosphate synthase 2921 56.10 -1 3093500..3093745 - 81 99082762 - TM1040_2922 - exodeoxyribonuclease VII small subunit 2922 60.41 0 3093742..3094668 - 308 99082763 - TM1040_2923 - histone deacetylase superfamily protein 2923 58.72 0 3094788..3095492 - 234 99082764 - TM1040_2924 - two component transcriptional regulator 2924 58.28 0 3095489..3096001 - 170 99082765 - TM1040_2925 - MarR family transcriptional regulator 2925 56.75 -1 3096162..3097028 + 288 99082766 - TM1040_2926 - branched-chain amino acid aminotransferase 2926 58.74 0 3097197..3097625 - 142 99082767 - TM1040_2927 - OsmC-like protein 2927 57.87 0 3097733..3098164 + 143 99082768 - TM1040_2928 - MarR family transcriptional regulator 2928 57.64 0 3098183..3099124 - 313 99082769 - TM1040_2929 - hypothetical protein 2929 60.52 0 3099209..3099859 - 216 99082770 - TM1040_2930 - cation efflux protein 2930 58.27 0 3099944..3100360 + 138 99082771 - TM1040_2931 - MerR family transcriptional regulator 2931 60.15 0 3100370..3101275 - 301 99082772 - TM1040_2932 - NAD-dependent epimerase/dehydratase 2932 60.69 0 3101671..3102390 + 239 99082773 - TM1040_2933 - hypothetical protein 2933 57.77 0 3102377..3103309 + 310 99082774 - TM1040_2934 - periplasmic binding protein 2934 62.70 0 3103310..3104317 + 335 99082775 - TM1040_2935 - transport system permease protein 2935 61.51 0 3104307..3105140 + 277 99082776 - TM1040_2936 - ABC transporter related 2936 57.56 0 3105098..3107272 - 724 99082777 - TM1040_2937 - methyl-accepting chemotaxis sensory transducer 2937 60.24 0 3107839..3108678 + 279 99082778 - TM1040_2938 - OmpA/MotB 2938 57.84 0 3108809..3110077 + 422 99082779 - TM1040_2939 - hypothetical protein 2939 57.07 -1 3110129..3111577 + 482 99082780 flgK TM1040_2940 - flagellar hook-associated protein FlgK 2940 56.25 -1 3111581..3112588 + 335 99082781 - TM1040_2941 - flagellar hook-associated protein FlgL family protein 2941 58.61 0 3112588..3113691 + 367 99082782 flgI TM1040_2942 - flagellar basal body P-ring protein 2942 58.88 0 3113864..3114184 - 106 99082783 - TM1040_2943 - hypothetical protein 2943 55.82 -1 3114200..3114946 - 248 99082784 fliP TM1040_2944 - flagellar biosynthesis protein FliP 2944 57.58 0 3114943..3115239 - 98 99082785 - TM1040_2945 - surface presentation of antigens (SPOA) protein 2945 54.27 -1 3115232..3115828 - 198 99082786 - TM1040_2946 - ABC transporter, ATP-binding protein, flagellar, putative 2946 58.97 0 3115828..3117543 - 571 99082787 fliF TM1040_2947 - flagellar MS-ring protein 2947 54.86 -1 3117624..3118148 + 174 99082788 - TM1040_2948 - flagellar basal body-associated protein FliL 2948 60.78 0 3118158..3118616 + 152 99082789 - TM1040_2949 - hypothetical protein 2949 58.09 0 3118616..3119233 + 205 99082790 - TM1040_2950 - hypothetical protein 2950 54.14 -1 3119308..3120177 + 289 99082791 - TM1040_2951 - flagellar motor protein MotA 2951 56.60 -1 3120174..3122588 + 804 99082792 - TM1040_2952 - hypothetical protein 2952 57.15 -1 3122923..3125013 + 696 99082793 flhA TM1040_2953 - flagellar biosynthesis protein FlhA 2953 57.05 -1 3125010..3125789 + 259 99082794 - TM1040_2954 - flagellar biosynthetic protein FliR 2954 53.02 -2 3125786..3126877 + 363 99082795 flhB TM1040_2955 - flagellar biosynthesis protein FlhB 2955 53.85 -2 3126889..3127278 + 129 99082796 - TM1040_2956 - hypothetical protein 2956 56.27 -1 3127555..3128064 - 169 99082797 - TM1040_2957 - hypothetical protein 2957 58.81 0 3128076..3128813 - 245 99082798 flgH TM1040_2958 - flagellar basal body L-ring protein 2958 59.47 0 3128813..3129229 - 138 99082799 flgA TM1040_2959 - flagellar basal body P-ring biosynthesis protein FlgA 2959 58.02 0 3129230..3130015 - 261 99082800 flgG TM1040_2960 - flagellar basal body rod protein FlgG 2960 58.30 0 3130025..3130741 - 238 99082801 flgF TM1040_2961 - flagellar basal body rod protein FlgF 2961 52.69 -2 3130741..3131019 - 92 99082802 - TM1040_2962 - export protein FliQ 2962 57.58 0 3131023..3131319 - 98 99082803 fliE TM1040_2963 - flagellar hook-basal body protein FliE 2963 56.49 -1 3131343..3131735 - 130 99082804 flgC TM1040_2964 - flagellar basal body rod protein FlgC 2964 54.36 -1 3131752..3132141 - 129 99082805 flgB TM1040_2965 - flagellar basal body rod protein FlgB 2965 58.77 0 3132230..3133558 + 442 99082806 - TM1040_2966 - ATP synthase FliI/YscN 2966 55.21 -1 3133720..3134007 + 95 99082807 - TM1040_2967 - transposase IS3/IS911 2967 58.74 0 3134061..3134855 + 264 99082808 - TM1040_2968 - integrase catalytic subunit 2968 56.18 -1 3134929..3135195 + 88 99082809 - TM1040_2969 - transposase IS3/IS911 2969 59.40 0 3135228..3136025 + 265 99082810 - TM1040_2970 - integrase catalytic subunit 2970 53.71 -2 3136295..3138247 - 650 99082811 - TM1040_2971 - hypothetical protein 2971 58.02 0 3138244..3138648 - 134 99082812 flbT TM1040_2972 - flagellar biosynthesis repressor FlbT 2972 55.38 -1 3138651..3139022 - 123 99082813 flaF TM1040_2973 - flagellar biosynthesis regulatory protein FlaF 2973 55.83 -1 3139109..3139957 - 282 99082814 - TM1040_2974 - flagellin-like 2974 55.83 -1 3140173..3140541 - 122 99082815 - TM1040_2975 - hypothetical protein 2975 59.79 0 3140538..3140828 - 96 99082816 - TM1040_2976 - flagellar protein FlgJ, putative 2976 59.29 0 3140954..3142540 + 528 99082817 - TM1040_2977 - hypothetical protein 2977 56.90 -1 3142545..3143240 + 231 99082818 flgD TM1040_2978 - flagellar basal body rod modification protein 2978 61.13 0 3143290..3144138 + 282 99082819 - TM1040_2979 - aminoglycoside phosphotransferase 2979 60.09 0 3144135..3145442 - 435 99082820 - TM1040_2980 - FAD dependent oxidoreductase 2980 58.00 0 3145439..3146257 - 272 99082821 - TM1040_2981 - binding-protein-dependent transport systems inner membrane component 2981 56.35 -1 3146254..3147135 - 293 99082822 - TM1040_2982 - binding-protein-dependent transport systems inner membrane component 2982 57.48 0 3147135..3148331 - 398 99082823 - TM1040_2983 - spermidine/putrescine ABC transporter ATP-binding subunit 2983 57.48 0 3148365..3149453 - 362 99082824 - TM1040_2984 - extracellular solute-binding protein 2984 57.83 0 3149540..3150286 + 248 99082825 - TM1040_2985 - GntR family transcriptional regulator 2985 58.15 0 3150350..3151747 + 465 99082826 - TM1040_2986 - putative aminotransferase 2986 59.40 0 3152051..3153151 + 366 99082827 - TM1040_2987 - spermidine/putrescine ABC transporter ATP-binding subunit 2987 60.70 0 3153256..3154362 + 368 99082828 - TM1040_2988 - polyamine ABC trasnporter, periplasmic polyamine-binding protein 2988 58.73 0 3154473..3156098 + 541 99082829 - TM1040_2989 - binding-protein-dependent transport systems inner membrane component 2989 58.16 0 3156106..3157281 + 391 99082830 - TM1040_2990 - binding-protein-dependent transport systems inner membrane component 2990 59.28 0 3157346..3158713 - 455 99082831 - TM1040_2991 - lytic murein transglycosylase 2991 57.84 0 3158821..3159579 - 252 99082832 - TM1040_2992 - helix-turn-helix, type 11 2992 60.36 0 3159600..3160313 + 237 99082833 - TM1040_2993 - hypothetical protein 2993 59.27 0 3160462..3162747 - 761 99082834 - TM1040_2994 - RNAse R 2994 58.39 0 3162863..3163285 - 140 99082835 - TM1040_2995 - GCN5-related N-acetyltransferase 2995 59.25 0 3163282..3164427 - 381 99082836 - TM1040_2996 - succinyl-diaminopimelate desuccinylase 2996 62.30 0 3164896..3165993 + 365 99082837 - TM1040_2997 - hypothetical protein 2997 57.09 -1 3166064..3167128 + 354 99082838 - TM1040_2998 - extracellular solute-binding protein 2998 60.66 0 3167180..3167545 - 121 99082839 - TM1040_2999 - hypothetical protein 2999 56.99 -1 3167703..3169283 + 526 99082840 - TM1040_3000 - hypothetical protein 3000 61.31 0 3169277..3169930 - 217 99082841 - TM1040_3001 - GntR family transcriptional regulator 3001 60.64 0 3170058..3170588 + 176 99082842 - TM1040_3002 - hypothetical protein 3002 61.90 0 3170563..3171927 - 454 99082843 - TM1040_3003 - N-formimino-L-glutamate deiminase 3003 62.89 0 3172003..3173220 + 405 99082844 - TM1040_3004 - imidazolonepropionase 3004 64.24 +1 3173217..3174740 + 507 99082845 - TM1040_3005 - histidine ammonia-lyase 3005 60.49 0 3174737..3175513 + 258 99082846 - TM1040_3006 - N-formylglutamate amidohydrolase 3006 60.21 0 3175510..3177198 + 562 99082847 - TM1040_3007 - urocanate hydratase 3007 55.13 -1 3177254..3177643 - 129 99082848 - TM1040_3008 - glyoxalase/bleomycin resistance protein/dioxygenase 3008 60.02 0 3177816..3178643 - 275 161899026 dapD TM1040_3009 - 2,3,4,5-tetrahydropyridine-2-carboxylate N-succinyltransferase 3009 61.90 0 3178764..3179393 - 209 99082850 - TM1040_3010 - GntR family transcriptional regulator 3010 60.27 0 3179412..3180365 - 317 99082851 - TM1040_3011 - threonine dehydratase 3011 59.01 0 3180522..3181370 + 282 99082852 - TM1040_3012 - hypothetical protein 3012 57.35 0 3181566..3181769 - 67 99082853 - TM1040_3013 - hypothetical protein 3013 57.71 0 3181937..3183130 - 397 99082854 - TM1040_3014 - hypothetical protein 3014 60.66 0 3183354..3183902 - 182 99082855 - TM1040_3015 - hypothetical protein 60.41 MEAN 3.16 STD DEV
Last Updated: Dec 04, 2008
Funding for this work was provided by the Peter Wall Institute for Advanced Studies. This service is hosted by the Brinkman Laboratory of the Department of Molecular Biology and Biochemistry at Simon Fraser University.
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