IslandPathversion 1.0

IslandPath Analysis: Silicibacter sp. TM1040



Each circle in the graphic corresponds to a predicted protein-coding ORF in the genome. Circle colours indicate if an ORF has a higher or lower %G+C than cutoffs you set below --(default is +/- 3.48 of the mean %G+C). Strike lines across the circles represent regions with dinucleotide bias above a pre-determined cutoff. Click on a circle to view a different portion of the table presented below the graph (default is the first 100 ORFs).
A yellow circle indicates its %G+C value is bigger than the high value. A green circle indicates its %G+C value is bigger than the low value and smaller than the high value. A pink circle indicates its %G+C value is smaller than the low value. A strike line across the circles indicates the region has dinucleotide bais above 1 STD DEV. A black verticle bar indicates a transfer RNA gene lies between the two ORFs. A purple verticle bar indicates a ribosomal RNA gene lies between the two ORFs. A deep blue verticle bar indicates both a tRNA and rRNA gene lie between the two ORFs. A black square indicates the dot is annotated as a transposase. A black triangle indicates the dot is annotated as an integrase. Low: High: Mean: 60.41 STD DEV: 3.16
Silicibacter sp. TM1040, complete genome - 1..3200938
3030 proteins
Pos	%G+C	SD	Location	Strand	Length	PID	Gene	Synonym	Code	Product
2885	 53.50	-2	3055623..3055979	-	118	99082726	-	TM1040_2886	-	Hpt protein
2886	 56.37	-1	3056120..3057391	+	423	99082727	-	TM1040_2887	-	response regulator receiver modulated serine phosphatase
2887	 62.39	0	3057398..3057841	-	147	99082728	-	TM1040_2888	-	NUDIX hydrolase
2888	 58.59	0	3057918..3058895	+	325	99082729	-	TM1040_2889	-	Hsp33 protein
2889	 59.83	0	3058901..3059500	+	199	99082730	-	TM1040_2890	-	NUDIX hydrolase
2890	 59.09	0	3059497..3060657	+	386	99082731	-	TM1040_2891	-	polynucleotide adenylyltransferase region
2891	 57.53	0	3060885..3062723	+	612	99082732	-	TM1040_2892	-	ABC transporter related
2892	 58.97	0	3062720..3064564	+	614	99082733	-	TM1040_2893	-	ABC transporter related
2893	 60.08	0	3064623..3065867	+	414	99082734	-	TM1040_2894	-	23S rRNA (uracil-5-)-methyltransferase RumA
2894	 56.36	-1	3065895..3066680	+	261	99082735	-	TM1040_2895	-	Ion transport protein
2895	 60.53	0	3066782..3067270	+	162	99082736	-	TM1040_2896	-	ErfK/YbiS/YcfS/YnhG
2896	 55.74	-1	3067377..3067907	-	176	99082737	-	TM1040_2897	-	Allergen V5/Tpx-1 related
2897	 58.41	0	3068040..3068657	+	205	99082738	-	TM1040_2898	-	twin-arginine translocation pathway signal
2898	 59.56	0	3068800..3068982	+	60	99082739	-	TM1040_2899	-	hypothetical protein
2899	 56.81	-1	3069070..3070134	-	354	99082740	hemH	TM1040_2900	-	ferrochelatase
2900	 60.00	0	3070236..3071075	-	279	99082741	-	TM1040_2901	-	hypothetical protein
2901	 63.66	+1	3071087..3071818	+	243	99082742	-	TM1040_2902	-	competence protein F, putative
2902	 57.75	0	3071890..3072147	+	85	99082743	-	TM1040_2903	-	glutaredoxin GrxC
2903	 61.03	0	3072152..3072985	+	277	99082744	-	TM1040_2904	-	Nitrilase/cyanide hydratase and apolipoprotein N-acyltransferase
2904	 56.92	-1	3072985..3073425	+	146	99082745	-	TM1040_2905	-	MarR family transcriptional regulator
2905	 56.85	-1	3073732..3074475	-	247	99082746	-	TM1040_2906	-	3-demethylubiquinone-9 3-methyltransferase
2906	 56.47	-1	3074527..3075507	+	326	99082747	-	TM1040_2907	-	prolyl aminopeptidase
2907	 62.44	0	3075504..3076355	+	283	99082748	-	TM1040_2908	-	peptide/opine/nickel uptake ABC transporter periplasmic substrate-binding protein
2908	 58.17	0	3076592..3077203	+	203	99082749	-	TM1040_2909	-	hypothetical protein
2909	 58.94	0	3077203..3078819	+	538	99082750	nusA	TM1040_2910	-	transcription elongation factor NusA
2910	 59.22	0	3078849..3079466	+	205	99082751	-	TM1040_2911	-	hypothetical protein
2911	 60.81	0	3079475..3081982	+	835	99082752	infB	TM1040_2912	-	translation initiation factor IF-2
2912	 54.88	-1	3082087..3082383	-	98	99082753	-	TM1040_2913	-	hypothetical protein
2913	 57.42	0	3082512..3082922	-	136	99082754	-	TM1040_2914	-	mutator mutT protein
2914	 59.41	0	3082919..3084145	-	408	99082755	argJ	TM1040_2915	-	bifunctional ornithine acetyltransferase/N-acetylglutamate synthase protein
2915	 56.81	-1	3084178..3085029	-	283	99082756	-	TM1040_2916	-	PpiC-type peptidyl-prolyl cis-trans isomerase
2916	 58.59	0	3085207..3087894	+	895	99082757	-	TM1040_2917	-	preprotein translocase subunit SecA
2917	 58.08	0	3088030..3088926	+	298	99082758	-	TM1040_2918	-	hypothetical protein
2918	 60.55	0	3088950..3090503	+	517	99082759	-	TM1040_2919	-	OmpA/MotB
2919	 60.58	0	3090662..3092599	-	645	99082760	-	TM1040_2920	-	1-deoxy-D-xylulose-5-phosphate synthase
2920	 61.23	0	3092630..3093493	-	287	99082761	-	TM1040_2921	-	farnesyl-diphosphate synthase
2921	 56.10	-1	3093500..3093745	-	81	99082762	-	TM1040_2922	-	exodeoxyribonuclease VII small subunit
2922	 60.41	0	3093742..3094668	-	308	99082763	-	TM1040_2923	-	histone deacetylase superfamily protein
2923	 58.72	0	3094788..3095492	-	234	99082764	-	TM1040_2924	-	two component transcriptional regulator
2924	 58.28	0	3095489..3096001	-	170	99082765	-	TM1040_2925	-	MarR family transcriptional regulator
2925	 56.75	-1	3096162..3097028	+	288	99082766	-	TM1040_2926	-	branched-chain amino acid aminotransferase
2926	 58.74	0	3097197..3097625	-	142	99082767	-	TM1040_2927	-	OsmC-like protein
2927	 57.87	0	3097733..3098164	+	143	99082768	-	TM1040_2928	-	MarR family transcriptional regulator
2928	 57.64	0	3098183..3099124	-	313	99082769	-	TM1040_2929	-	hypothetical protein
2929	 60.52	0	3099209..3099859	-	216	99082770	-	TM1040_2930	-	cation efflux protein
2930	 58.27	0	3099944..3100360	+	138	99082771	-	TM1040_2931	-	MerR family transcriptional regulator
2931	 60.15	0	3100370..3101275	-	301	99082772	-	TM1040_2932	-	NAD-dependent epimerase/dehydratase
2932	 60.69	0	3101671..3102390	+	239	99082773	-	TM1040_2933	-	hypothetical protein
2933	 57.77	0	3102377..3103309	+	310	99082774	-	TM1040_2934	-	periplasmic binding protein
2934	 62.70	0	3103310..3104317	+	335	99082775	-	TM1040_2935	-	transport system permease protein
2935	 61.51	0	3104307..3105140	+	277	99082776	-	TM1040_2936	-	ABC transporter related
2936	 57.56	0	3105098..3107272	-	724	99082777	-	TM1040_2937	-	methyl-accepting chemotaxis sensory transducer
2937	 60.24	0	3107839..3108678	+	279	99082778	-	TM1040_2938	-	OmpA/MotB
2938	 57.84	0	3108809..3110077	+	422	99082779	-	TM1040_2939	-	hypothetical protein
2939	 57.07	-1	3110129..3111577	+	482	99082780	flgK	TM1040_2940	-	flagellar hook-associated protein FlgK
2940	 56.25	-1	3111581..3112588	+	335	99082781	-	TM1040_2941	-	flagellar hook-associated protein FlgL family protein
2941	 58.61	0	3112588..3113691	+	367	99082782	flgI	TM1040_2942	-	flagellar basal body P-ring protein
2942	 58.88	0	3113864..3114184	-	106	99082783	-	TM1040_2943	-	hypothetical protein
2943	 55.82	-1	3114200..3114946	-	248	99082784	fliP	TM1040_2944	-	flagellar biosynthesis protein FliP
2944	 57.58	0	3114943..3115239	-	98	99082785	-	TM1040_2945	-	surface presentation of antigens (SPOA) protein
2945	 54.27	-1	3115232..3115828	-	198	99082786	-	TM1040_2946	-	ABC transporter, ATP-binding protein, flagellar, putative
2946	 58.97	0	3115828..3117543	-	571	99082787	fliF	TM1040_2947	-	flagellar MS-ring protein
2947	 54.86	-1	3117624..3118148	+	174	99082788	-	TM1040_2948	-	flagellar basal body-associated protein FliL
2948	 60.78	0	3118158..3118616	+	152	99082789	-	TM1040_2949	-	hypothetical protein
2949	 58.09	0	3118616..3119233	+	205	99082790	-	TM1040_2950	-	hypothetical protein
2950	 54.14	-1	3119308..3120177	+	289	99082791	-	TM1040_2951	-	flagellar motor protein MotA
2951	 56.60	-1	3120174..3122588	+	804	99082792	-	TM1040_2952	-	hypothetical protein
2952	 57.15	-1	3122923..3125013	+	696	99082793	flhA	TM1040_2953	-	flagellar biosynthesis protein FlhA
2953	 57.05	-1	3125010..3125789	+	259	99082794	-	TM1040_2954	-	flagellar biosynthetic protein FliR
2954	 53.02	-2	3125786..3126877	+	363	99082795	flhB	TM1040_2955	-	flagellar biosynthesis protein FlhB
2955	 53.85	-2	3126889..3127278	+	129	99082796	-	TM1040_2956	-	hypothetical protein
2956	 56.27	-1	3127555..3128064	-	169	99082797	-	TM1040_2957	-	hypothetical protein
2957	 58.81	0	3128076..3128813	-	245	99082798	flgH	TM1040_2958	-	flagellar basal body L-ring protein
2958	 59.47	0	3128813..3129229	-	138	99082799	flgA	TM1040_2959	-	flagellar basal body P-ring biosynthesis protein FlgA
2959	 58.02	0	3129230..3130015	-	261	99082800	flgG	TM1040_2960	-	flagellar basal body rod protein FlgG
2960	 58.30	0	3130025..3130741	-	238	99082801	flgF	TM1040_2961	-	flagellar basal body rod protein FlgF
2961	 52.69	-2	3130741..3131019	-	92	99082802	-	TM1040_2962	-	export protein FliQ
2962	 57.58	0	3131023..3131319	-	98	99082803	fliE	TM1040_2963	-	flagellar hook-basal body protein FliE
2963	 56.49	-1	3131343..3131735	-	130	99082804	flgC	TM1040_2964	-	flagellar basal body rod protein FlgC
2964	 54.36	-1	3131752..3132141	-	129	99082805	flgB	TM1040_2965	-	flagellar basal body rod protein FlgB
2965	 58.77	0	3132230..3133558	+	442	99082806	-	TM1040_2966	-	ATP synthase FliI/YscN
2966	 55.21	-1	3133720..3134007	+	95	99082807	-	TM1040_2967	-	transposase IS3/IS911
2967	 58.74	0	3134061..3134855	+	264	99082808	-	TM1040_2968	-	integrase catalytic subunit
2968	 56.18	-1	3134929..3135195	+	88	99082809	-	TM1040_2969	-	transposase IS3/IS911
2969	 59.40	0	3135228..3136025	+	265	99082810	-	TM1040_2970	-	integrase catalytic subunit
2970	 53.71	-2	3136295..3138247	-	650	99082811	-	TM1040_2971	-	hypothetical protein
2971	 58.02	0	3138244..3138648	-	134	99082812	flbT	TM1040_2972	-	flagellar biosynthesis repressor FlbT
2972	 55.38	-1	3138651..3139022	-	123	99082813	flaF	TM1040_2973	-	flagellar biosynthesis regulatory protein FlaF
2973	 55.83	-1	3139109..3139957	-	282	99082814	-	TM1040_2974	-	flagellin-like
2974	 55.83	-1	3140173..3140541	-	122	99082815	-	TM1040_2975	-	hypothetical protein
2975	 59.79	0	3140538..3140828	-	96	99082816	-	TM1040_2976	-	flagellar protein FlgJ, putative
2976	 59.29	0	3140954..3142540	+	528	99082817	-	TM1040_2977	-	hypothetical protein
2977	 56.90	-1	3142545..3143240	+	231	99082818	flgD	TM1040_2978	-	flagellar basal body rod modification protein
2978	 61.13	0	3143290..3144138	+	282	99082819	-	TM1040_2979	-	aminoglycoside phosphotransferase
2979	 60.09	0	3144135..3145442	-	435	99082820	-	TM1040_2980	-	FAD dependent oxidoreductase
2980	 58.00	0	3145439..3146257	-	272	99082821	-	TM1040_2981	-	binding-protein-dependent transport systems inner membrane component
2981	 56.35	-1	3146254..3147135	-	293	99082822	-	TM1040_2982	-	binding-protein-dependent transport systems inner membrane component
2982	 57.48	0	3147135..3148331	-	398	99082823	-	TM1040_2983	-	spermidine/putrescine ABC transporter ATP-binding subunit
2983	 57.48	0	3148365..3149453	-	362	99082824	-	TM1040_2984	-	extracellular solute-binding protein
2984	 57.83	0	3149540..3150286	+	248	99082825	-	TM1040_2985	-	GntR family transcriptional regulator
60.41	MEAN

3.16	STD DEV



Last Updated: Dec 04, 2008

Funding for this work was provided by the Peter Wall Institute for Advanced Studies. This service is hosted by the Brinkman Laboratory of the Department of Molecular Biology and Biochemistry at Simon Fraser University.