version 1.0
Silicibacter sp. TM1040, complete genome - 1..3200938 3030 proteins Pos %G+C SD Location Strand Length PID Gene Synonym Code Product 2831 53.66 -2 3001004..3001426 + 140 99082672 - TM1040_2832 - hypothetical protein 2832 56.57 -1 3001480..3001875 + 131 99082673 - TM1040_2833 - hypothetical protein 2833 51.75 -2 3002076..3002417 - 113 99082674 - TM1040_2834 - hypothetical protein 2834 56.49 -1 3002642..3004027 - 461 99082675 - TM1040_2835 - S-adenosyl-L-homocysteine hydrolase 2835 57.47 0 3004294..3004902 + 202 99082676 - TM1040_2836 - metal dependent phosphohydrolase 2836 61.41 0 3004905..3006122 - 405 99082677 - TM1040_2837 - hypothetical protein 2837 58.74 0 3006131..3006685 - 184 99082678 - TM1040_2838 - response regulator receiver protein 2838 58.01 0 3006766..3007389 - 207 99082679 - TM1040_2839 - electron transport protein SCO1/SenC 2839 58.23 0 3007508..3008905 + 465 99082680 - TM1040_2840 - periplasmic sensor signal transduction histidine kinase 2840 59.96 0 3008991..3010541 + 516 99082681 - TM1040_2841 - hypothetical protein 2841 58.70 0 3010583..3011059 + 158 99082682 - TM1040_2842 - hypothetical protein 2842 59.26 0 3011056..3012054 + 332 99082683 - TM1040_2843 - aminoglycoside phosphotransferase 2843 58.15 0 3012051..3012731 + 226 99082684 - TM1040_2844 - nucleotidyl transferase 2844 59.88 0 3012733..3015666 + 977 99082685 - TM1040_2845 - hypothetical protein 2845 60.10 0 3015663..3019028 + 1121 99082686 - TM1040_2846 - UvrD/REP helicase 2846 60.12 0 3019090..3019410 + 106 99082687 - TM1040_2847 - thioredoxin 2847 57.95 0 3019551..3019745 - 64 99082688 - TM1040_2848 - hypothetical protein 2848 62.01 0 3019981..3020538 + 185 99082689 - TM1040_2849 - ATP-dependent protease peptidase subunit 2849 59.19 0 3020535..3021590 + 351 99082690 - TM1040_2850 - hypothetical protein 2850 57.28 0 3021606..3022916 + 436 99082691 hslU TM1040_2851 - ATP-dependent protease ATP-binding subunit 2851 57.49 0 3022996..3024117 + 373 99082692 - TM1040_2852 - protein of unknown function DUF900, hydrolase-like 2852 59.87 0 3024125..3024727 - 200 99082693 - TM1040_2853 - Smr protein/MutS2 2853 58.55 0 3024727..3025785 - 352 99082694 - TM1040_2854 - MltA 2854 57.84 0 3025782..3026438 - 218 99082695 - TM1040_2855 - import inner membrane translocase, subunit Tim44 2855 56.63 -1 3026553..3027050 + 165 99082696 - TM1040_2856 - FxsA cytoplasmic membrane protein 2856 56.36 -1 3027115..3027609 + 164 99082697 - TM1040_2857 - preprotein translocase subunit SecB 2857 57.51 0 3027669..3028400 - 243 99082698 - TM1040_2858 - DNA polymerase III, epsilon subunit 2858 56.57 -1 3028393..3028986 - 197 99082699 - TM1040_2859 - dephospho-CoA kinase 2859 56.68 -1 3028986..3029816 - 276 99082700 - TM1040_2860 - shikimate 5-dehydrogenase 2860 55.00 -1 3029813..3030412 - 199 99082701 - TM1040_2861 - Maf-like protein 2861 51.97 -2 3030831..3031286 + 151 99082702 - TM1040_2862 - hypothetical protein 2862 54.40 -1 3031417..3032688 + 423 99082703 rho TM1040_2863 - transcription termination factor Rho 2863 53.69 -2 3032719..3034005 + 428 99082704 trmE TM1040_2864 - tRNA modification GTPase TrmE 2864 50.85 -2 3034009..3035892 + 627 99082705 - TM1040_2865 - tRNA uridine 5-carboxymethylaminomethyl modification enzyme GidA 2865 49.35 -2 3035889..3036506 + 205 99082706 - TM1040_2866 - methyltransferase GidB 2866 50.92 -2 3036499..3037311 + 270 99082707 - TM1040_2867 - chromosome segregation ATPase 2867 53.56 -2 3037330..3038229 + 299 99082708 - TM1040_2868 - chromosome segregation DNA-binding protein 2868 51.41 -2 3038219..3038572 - 117 99082709 - TM1040_2869 - hypothetical protein 2869 56.45 -1 3038576..3039730 - 384 99082710 - TM1040_2870 - coproporphyrinogen III oxidase 2870 60.00 0 3039723..3040337 - 204 99082711 - TM1040_2871 - putative deoxyribonucleotide triphosphate pyrophosphatase 2871 58.68 0 3040334..3041047 - 237 99082712 - TM1040_2872 - RNAse PH 2872 57.18 -1 3041186..3042250 + 354 99082713 hrcA TM1040_2873 - heat-inducible transcription repressor 2873 59.93 0 3042260..3042823 + 187 99082714 - TM1040_2874 - GrpE protein 2874 58.18 0 3042910..3045549 - 879 99082715 - TM1040_2875 - DNA mismatch repair protein 2875 56.42 -1 3045670..3046518 - 282 99082716 - TM1040_2876 - flagellin-like 2876 57.62 0 3046844..3049099 + 751 99082717 - TM1040_2877 - malic enzyme 2877 60.82 0 3049119..3049991 + 290 99082718 - TM1040_2878 - PfkB 2878 55.36 -1 3050052..3050723 - 223 99082719 - TM1040_2879 - peptide methionine sulfoxide reductase 2879 54.61 -1 3050862..3051143 - 93 99082720 - TM1040_2880 - sterol-binding 2880 54.26 -1 3051234..3051620 - 128 99082721 - TM1040_2881 - hypothetical protein 2881 55.19 -1 3051722..3052183 - 153 99082722 - TM1040_2882 - hypothetical protein 2882 56.86 -1 3052183..3053406 - 407 99082723 - TM1040_2883 - argininosuccinate synthase 2883 51.59 -2 3053537..3054292 + 251 99082724 - TM1040_2884 - hypothetical protein 2884 58.76 0 3054365..3055591 + 408 99082725 - TM1040_2885 - threonine dehydratase 2885 53.50 -2 3055623..3055979 - 118 99082726 - TM1040_2886 - Hpt protein 2886 56.37 -1 3056120..3057391 + 423 99082727 - TM1040_2887 - response regulator receiver modulated serine phosphatase 2887 62.39 0 3057398..3057841 - 147 99082728 - TM1040_2888 - NUDIX hydrolase 2888 58.59 0 3057918..3058895 + 325 99082729 - TM1040_2889 - Hsp33 protein 2889 59.83 0 3058901..3059500 + 199 99082730 - TM1040_2890 - NUDIX hydrolase 2890 59.09 0 3059497..3060657 + 386 99082731 - TM1040_2891 - polynucleotide adenylyltransferase region 2891 57.53 0 3060885..3062723 + 612 99082732 - TM1040_2892 - ABC transporter related 2892 58.97 0 3062720..3064564 + 614 99082733 - TM1040_2893 - ABC transporter related 2893 60.08 0 3064623..3065867 + 414 99082734 - TM1040_2894 - 23S rRNA (uracil-5-)-methyltransferase RumA 2894 56.36 -1 3065895..3066680 + 261 99082735 - TM1040_2895 - Ion transport protein 2895 60.53 0 3066782..3067270 + 162 99082736 - TM1040_2896 - ErfK/YbiS/YcfS/YnhG 2896 55.74 -1 3067377..3067907 - 176 99082737 - TM1040_2897 - Allergen V5/Tpx-1 related 2897 58.41 0 3068040..3068657 + 205 99082738 - TM1040_2898 - twin-arginine translocation pathway signal 2898 59.56 0 3068800..3068982 + 60 99082739 - TM1040_2899 - hypothetical protein 2899 56.81 -1 3069070..3070134 - 354 99082740 hemH TM1040_2900 - ferrochelatase 2900 60.00 0 3070236..3071075 - 279 99082741 - TM1040_2901 - hypothetical protein 2901 63.66 +1 3071087..3071818 + 243 99082742 - TM1040_2902 - competence protein F, putative 2902 57.75 0 3071890..3072147 + 85 99082743 - TM1040_2903 - glutaredoxin GrxC 2903 61.03 0 3072152..3072985 + 277 99082744 - TM1040_2904 - Nitrilase/cyanide hydratase and apolipoprotein N-acyltransferase 2904 56.92 -1 3072985..3073425 + 146 99082745 - TM1040_2905 - MarR family transcriptional regulator 2905 56.85 -1 3073732..3074475 - 247 99082746 - TM1040_2906 - 3-demethylubiquinone-9 3-methyltransferase 2906 56.47 -1 3074527..3075507 + 326 99082747 - TM1040_2907 - prolyl aminopeptidase 2907 62.44 0 3075504..3076355 + 283 99082748 - TM1040_2908 - peptide/opine/nickel uptake ABC transporter periplasmic substrate-binding protein 2908 58.17 0 3076592..3077203 + 203 99082749 - TM1040_2909 - hypothetical protein 2909 58.94 0 3077203..3078819 + 538 99082750 nusA TM1040_2910 - transcription elongation factor NusA 2910 59.22 0 3078849..3079466 + 205 99082751 - TM1040_2911 - hypothetical protein 2911 60.81 0 3079475..3081982 + 835 99082752 infB TM1040_2912 - translation initiation factor IF-2 2912 54.88 -1 3082087..3082383 - 98 99082753 - TM1040_2913 - hypothetical protein 2913 57.42 0 3082512..3082922 - 136 99082754 - TM1040_2914 - mutator mutT protein 2914 59.41 0 3082919..3084145 - 408 99082755 argJ TM1040_2915 - bifunctional ornithine acetyltransferase/N-acetylglutamate synthase protein 2915 56.81 -1 3084178..3085029 - 283 99082756 - TM1040_2916 - PpiC-type peptidyl-prolyl cis-trans isomerase 2916 58.59 0 3085207..3087894 + 895 99082757 - TM1040_2917 - preprotein translocase subunit SecA 2917 58.08 0 3088030..3088926 + 298 99082758 - TM1040_2918 - hypothetical protein 2918 60.55 0 3088950..3090503 + 517 99082759 - TM1040_2919 - OmpA/MotB 2919 60.58 0 3090662..3092599 - 645 99082760 - TM1040_2920 - 1-deoxy-D-xylulose-5-phosphate synthase 2920 61.23 0 3092630..3093493 - 287 99082761 - TM1040_2921 - farnesyl-diphosphate synthase 2921 56.10 -1 3093500..3093745 - 81 99082762 - TM1040_2922 - exodeoxyribonuclease VII small subunit 2922 60.41 0 3093742..3094668 - 308 99082763 - TM1040_2923 - histone deacetylase superfamily protein 2923 58.72 0 3094788..3095492 - 234 99082764 - TM1040_2924 - two component transcriptional regulator 2924 58.28 0 3095489..3096001 - 170 99082765 - TM1040_2925 - MarR family transcriptional regulator 2925 56.75 -1 3096162..3097028 + 288 99082766 - TM1040_2926 - branched-chain amino acid aminotransferase 2926 58.74 0 3097197..3097625 - 142 99082767 - TM1040_2927 - OsmC-like protein 2927 57.87 0 3097733..3098164 + 143 99082768 - TM1040_2928 - MarR family transcriptional regulator 2928 57.64 0 3098183..3099124 - 313 99082769 - TM1040_2929 - hypothetical protein 2929 60.52 0 3099209..3099859 - 216 99082770 - TM1040_2930 - cation efflux protein 2930 58.27 0 3099944..3100360 + 138 99082771 - TM1040_2931 - MerR family transcriptional regulator 60.41 MEAN 3.16 STD DEV
Last Updated: Dec 04, 2008
Funding for this work was provided by the Peter Wall Institute for Advanced Studies. This service is hosted by the Brinkman Laboratory of the Department of Molecular Biology and Biochemistry at Simon Fraser University.
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1.0