version 1.0
Silicibacter sp. TM1040, complete genome - 1..3200938 3030 proteins Pos %G+C SD Location Strand Length PID Gene Synonym Code Product 2784 58.79 0 2945118..2946437 - 439 99082625 - TM1040_2785 - TRAP C4-dicarboxylate transport system permease DctM subunit 2785 55.78 -1 2946434..2947021 - 195 99082626 - TM1040_2786 - hypothetical protein 2786 60.85 0 2947018..2947791 - 257 99082627 - TM1040_2787 - N-formylglutamate amidohydrolase 2787 55.83 -1 2947896..2948753 + 285 99082628 - TM1040_2788 - RpiR family transcriptional regulator 2788 60.87 0 2948817..2949971 + 384 99082629 - TM1040_2789 - AMP-dependent synthetase and ligase 2789 64.22 +1 2949971..2951074 + 367 99082630 - TM1040_2790 - Acetyl-CoA C-acetyltransferase 2790 60.58 0 2951135..2953351 - 738 99082631 - TM1040_2791 - catalase/peroxidase HPI 2791 60.06 0 2953530..2954453 + 307 99082632 - TM1040_2792 - LysR family transcriptional regulator 2792 60.33 0 2954463..2955251 - 262 99082633 - TM1040_2793 - carnitinyl-CoA dehydratase 2793 61.96 0 2955248..2957287 - 679 99082634 - TM1040_2794 - CoA-binding 2794 54.29 -1 2957294..2957608 - 104 99082635 - TM1040_2795 - SelT/selW/selH selenoprotein 2795 58.58 0 2957611..2958810 - 399 99082636 - TM1040_2796 - butyryl-CoA dehydrogenase 2796 60.97 0 2958859..2959806 + 315 99082637 - TM1040_2797 - transcriptional regulator 2797 59.11 0 2959852..2960235 - 127 99082638 - TM1040_2798 - arsenate reductase and related 2798 60.02 0 2960323..2962128 + 601 99082639 - TM1040_2799 - adenine deaminase 2799 58.83 0 2962121..2963587 + 488 99082640 - TM1040_2800 - AMP nucleosidase 2800 58.16 0 2963731..2964024 + 97 99082641 - TM1040_2801 - histone-like DNA-binding protein 2801 61.87 0 2964165..2965082 + 305 99082642 - TM1040_2802 - hypothetical protein 2802 57.33 0 2965204..2965653 + 149 99082643 - TM1040_2803 - methionine sulfoxide reductase B 2803 55.81 -1 2965650..2966165 + 171 99082644 - TM1040_2804 - methionine sulfoxide reductase A 2804 62.08 0 2966243..2968249 - 668 99082645 - TM1040_2805 - hydantoinase/oxoprolinase 2805 59.67 0 2968323..2969366 - 347 99082646 - TM1040_2806 - hypothetical protein 2806 57.61 0 2969475..2970821 - 448 99082647 - TM1040_2807 - 6-aminohexanoate-dimer hydrolase 2807 57.61 0 2970802..2972226 - 474 99082648 - TM1040_2808 - hypothetical protein 2808 57.97 0 2972936..2973763 + 275 99082649 - TM1040_2809 - diaminopimelate epimerase 2809 58.61 0 2973760..2975025 + 421 99082650 - TM1040_2810 - MiaB-like tRNA modifying enzyme 2810 62.84 0 2975043..2975564 + 173 99082651 - TM1040_2811 - hypothetical protein 2811 59.34 0 2975706..2976497 - 263 99082652 - TM1040_2812 - cytochrome c1 2812 57.19 -1 2976516..2977844 - 442 99082653 - TM1040_2813 - cytochrome b/b6-like 2813 59.36 0 2977860..2978420 - 186 99082654 - TM1040_2814 - ubiquinol-cytochrome c reductase, iron-sulfur subunit 2814 57.38 0 2978645..2979247 - 200 99082655 - TM1040_2815 - glutathione S-transferase-like 2815 61.49 0 2979365..2980060 - 231 99082656 - TM1040_2816 - ABC transporter related 2816 62.60 0 2980047..2981618 - 523 99082657 thiP TM1040_2817 - thiamine transporter membrane protein 2817 58.21 0 2981594..2982574 - 326 99082658 tbpA TM1040_2818 - thiamine transporter substrate binding subunit 2818 59.12 0 2983051..2984163 + 370 99082659 - TM1040_2819 - chorismate synthase 2819 57.17 -1 2984942..2985931 + 329 99082660 - TM1040_2820 - 3-beta hydroxysteroid dehydrogenase/isomerase 2820 59.33 0 2985990..2986793 - 267 99082661 - TM1040_2821 - undecaprenyl-diphosphatase 2821 60.08 0 2987026..2988468 + 480 99082662 - TM1040_2822 - putative oxidoreductase 2822 60.40 0 2988543..2993075 + 1510 99082663 - TM1040_2823 - glutamate synthase (NADPH) large subunit 2823 60.08 0 2993220..2993963 + 247 99082664 - TM1040_2824 - monofunctional biosynthetic peptidoglycan transglycosylase 2824 56.61 -1 2994033..2994698 + 221 99082665 - TM1040_2825 - glutathione S-transferase-like 2825 61.28 0 2994998..2996482 - 494 99082666 - TM1040_2826 - HemY-like 2826 62.80 0 2996493..2997812 - 439 99082667 - TM1040_2827 - hypothetical protein 2827 61.25 0 2997862..2998599 - 245 99082668 - TM1040_2828 - uroporphyrinogen III synthase HEM4 2828 60.47 0 2998674..2999771 + 365 99082669 - TM1040_2829 - O-sialoglycoprotein endopeptidase 2829 62.20 0 2999768..3000730 + 320 99082670 - TM1040_2830 - glycerol-3-phosphate dehydrogenase (NAD(P)+) 2830 59.34 0 3000732..3001004 + 90 99082671 - TM1040_2831 - YciI-like protein 2831 53.66 -2 3001004..3001426 + 140 99082672 - TM1040_2832 - hypothetical protein 2832 56.57 -1 3001480..3001875 + 131 99082673 - TM1040_2833 - hypothetical protein 2833 51.75 -2 3002076..3002417 - 113 99082674 - TM1040_2834 - hypothetical protein 2834 56.49 -1 3002642..3004027 - 461 99082675 - TM1040_2835 - S-adenosyl-L-homocysteine hydrolase 2835 57.47 0 3004294..3004902 + 202 99082676 - TM1040_2836 - metal dependent phosphohydrolase 2836 61.41 0 3004905..3006122 - 405 99082677 - TM1040_2837 - hypothetical protein 2837 58.74 0 3006131..3006685 - 184 99082678 - TM1040_2838 - response regulator receiver protein 2838 58.01 0 3006766..3007389 - 207 99082679 - TM1040_2839 - electron transport protein SCO1/SenC 2839 58.23 0 3007508..3008905 + 465 99082680 - TM1040_2840 - periplasmic sensor signal transduction histidine kinase 2840 59.96 0 3008991..3010541 + 516 99082681 - TM1040_2841 - hypothetical protein 2841 58.70 0 3010583..3011059 + 158 99082682 - TM1040_2842 - hypothetical protein 2842 59.26 0 3011056..3012054 + 332 99082683 - TM1040_2843 - aminoglycoside phosphotransferase 2843 58.15 0 3012051..3012731 + 226 99082684 - TM1040_2844 - nucleotidyl transferase 2844 59.88 0 3012733..3015666 + 977 99082685 - TM1040_2845 - hypothetical protein 2845 60.10 0 3015663..3019028 + 1121 99082686 - TM1040_2846 - UvrD/REP helicase 2846 60.12 0 3019090..3019410 + 106 99082687 - TM1040_2847 - thioredoxin 2847 57.95 0 3019551..3019745 - 64 99082688 - TM1040_2848 - hypothetical protein 2848 62.01 0 3019981..3020538 + 185 99082689 - TM1040_2849 - ATP-dependent protease peptidase subunit 2849 59.19 0 3020535..3021590 + 351 99082690 - TM1040_2850 - hypothetical protein 2850 57.28 0 3021606..3022916 + 436 99082691 hslU TM1040_2851 - ATP-dependent protease ATP-binding subunit 2851 57.49 0 3022996..3024117 + 373 99082692 - TM1040_2852 - protein of unknown function DUF900, hydrolase-like 2852 59.87 0 3024125..3024727 - 200 99082693 - TM1040_2853 - Smr protein/MutS2 2853 58.55 0 3024727..3025785 - 352 99082694 - TM1040_2854 - MltA 2854 57.84 0 3025782..3026438 - 218 99082695 - TM1040_2855 - import inner membrane translocase, subunit Tim44 2855 56.63 -1 3026553..3027050 + 165 99082696 - TM1040_2856 - FxsA cytoplasmic membrane protein 2856 56.36 -1 3027115..3027609 + 164 99082697 - TM1040_2857 - preprotein translocase subunit SecB 2857 57.51 0 3027669..3028400 - 243 99082698 - TM1040_2858 - DNA polymerase III, epsilon subunit 2858 56.57 -1 3028393..3028986 - 197 99082699 - TM1040_2859 - dephospho-CoA kinase 2859 56.68 -1 3028986..3029816 - 276 99082700 - TM1040_2860 - shikimate 5-dehydrogenase 2860 55.00 -1 3029813..3030412 - 199 99082701 - TM1040_2861 - Maf-like protein 2861 51.97 -2 3030831..3031286 + 151 99082702 - TM1040_2862 - hypothetical protein 2862 54.40 -1 3031417..3032688 + 423 99082703 rho TM1040_2863 - transcription termination factor Rho 2863 53.69 -2 3032719..3034005 + 428 99082704 trmE TM1040_2864 - tRNA modification GTPase TrmE 2864 50.85 -2 3034009..3035892 + 627 99082705 - TM1040_2865 - tRNA uridine 5-carboxymethylaminomethyl modification enzyme GidA 2865 49.35 -2 3035889..3036506 + 205 99082706 - TM1040_2866 - methyltransferase GidB 2866 50.92 -2 3036499..3037311 + 270 99082707 - TM1040_2867 - chromosome segregation ATPase 2867 53.56 -2 3037330..3038229 + 299 99082708 - TM1040_2868 - chromosome segregation DNA-binding protein 2868 51.41 -2 3038219..3038572 - 117 99082709 - TM1040_2869 - hypothetical protein 2869 56.45 -1 3038576..3039730 - 384 99082710 - TM1040_2870 - coproporphyrinogen III oxidase 2870 60.00 0 3039723..3040337 - 204 99082711 - TM1040_2871 - putative deoxyribonucleotide triphosphate pyrophosphatase 2871 58.68 0 3040334..3041047 - 237 99082712 - TM1040_2872 - RNAse PH 2872 57.18 -1 3041186..3042250 + 354 99082713 hrcA TM1040_2873 - heat-inducible transcription repressor 2873 59.93 0 3042260..3042823 + 187 99082714 - TM1040_2874 - GrpE protein 2874 58.18 0 3042910..3045549 - 879 99082715 - TM1040_2875 - DNA mismatch repair protein 2875 56.42 -1 3045670..3046518 - 282 99082716 - TM1040_2876 - flagellin-like 2876 57.62 0 3046844..3049099 + 751 99082717 - TM1040_2877 - malic enzyme 2877 60.82 0 3049119..3049991 + 290 99082718 - TM1040_2878 - PfkB 2878 55.36 -1 3050052..3050723 - 223 99082719 - TM1040_2879 - peptide methionine sulfoxide reductase 2879 54.61 -1 3050862..3051143 - 93 99082720 - TM1040_2880 - sterol-binding 2880 54.26 -1 3051234..3051620 - 128 99082721 - TM1040_2881 - hypothetical protein 2881 55.19 -1 3051722..3052183 - 153 99082722 - TM1040_2882 - hypothetical protein 2882 56.86 -1 3052183..3053406 - 407 99082723 - TM1040_2883 - argininosuccinate synthase 2883 51.59 -2 3053537..3054292 + 251 99082724 - TM1040_2884 - hypothetical protein 60.41 MEAN 3.16 STD DEV
Last Updated: Dec 04, 2008
Funding for this work was provided by the Peter Wall Institute for Advanced Studies. This service is hosted by the Brinkman Laboratory of the Department of Molecular Biology and Biochemistry at Simon Fraser University.
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1.0