version 1.0
Silicibacter sp. TM1040, complete genome - 1..3200938 3030 proteins Pos %G+C SD Location Strand Length PID Gene Synonym Code Product 2741 62.48 0 2887058..2887870 - 270 99082582 - TM1040_2742 - ABC transporter related 2742 60.95 0 2887867..2888775 - 302 99082583 - TM1040_2743 - binding-protein-dependent transport systems inner membrane component 2743 60.97 0 2888775..2889809 - 344 99082584 - TM1040_2744 - binding-protein-dependent transport systems inner membrane component 2744 58.70 0 2889841..2891496 - 551 99082585 - TM1040_2745 - extracellular solute-binding protein 2745 62.11 0 2891848..2895138 + 1096 99082586 - TM1040_2746 - multi-sensor hybrid histidine kinase 2746 64.34 +1 2895144..2896046 - 300 99082587 - TM1040_2747 - RpiR family transcriptional regulator 2747 60.73 0 2896222..2896743 + 173 99082588 - TM1040_2748 - tripartite ATP-independent periplasmic transporter DctQ 2748 59.44 0 2896740..2898026 + 428 99082589 - TM1040_2749 - TRAP dicarboxylate transporter- DctM subunit 2749 60.73 0 2898076..2899119 + 347 99082590 - TM1040_2750 - TRAP dicarboxylate transporter, DctP subunit 2750 61.62 0 2899183..2900649 + 488 99082591 - TM1040_2751 - hypothetical protein 2751 61.93 0 2900649..2901704 + 351 99082592 - TM1040_2752 - alanine racemase-like 2752 61.60 0 2901701..2902627 + 308 99082593 - TM1040_2753 - PfkB 2753 61.54 0 2902654..2903043 + 129 99082594 - TM1040_2754 - endoribonuclease L-PSP 2754 60.54 0 2903128..2904465 - 445 99082595 - TM1040_2755 - carboxyl-terminal protease 2755 63.77 +1 2904473..2905576 - 367 99082596 - TM1040_2756 - peptidase M23B 2756 61.14 0 2905615..2907135 - 506 99082597 - TM1040_2757 - phosphoglyceromutase 2757 59.74 0 2907361..2907822 + 153 99082598 - TM1040_2758 - hypothetical protein 2758 62.24 0 2907826..2908299 - 157 99082599 - TM1040_2759 - acetyltransferase 2759 61.76 0 2908299..2909255 - 318 99082600 - TM1040_2760 - ABC transporter related 2760 56.83 -1 2909299..2909481 + 60 99082601 - TM1040_2761 - hypothetical protein 2761 63.58 +1 2909535..2910020 + 161 99082602 - TM1040_2762 - hypothetical protein 2762 54.87 -1 2910088..2910621 - 177 99082603 - TM1040_2763 - hypothetical protein 2763 61.25 0 2910652..2913459 + 935 99082604 - TM1040_2764 - DNA polymerase I 2764 59.24 0 2913628..2914395 - 255 99082605 - TM1040_2765 - hydroxypyruvate isomerase 2765 56.23 -1 2914614..2915207 - 197 99082606 - TM1040_2766 - hypothetical protein 2766 63.19 0 2915260..2916267 + 335 99082607 - TM1040_2767 - ATPase 2767 64.47 +1 2916264..2917172 + 302 99082608 - TM1040_2768 - hypothetical protein 2768 63.44 0 2917169..2919958 + 929 99082609 - TM1040_2769 - double-transmembrane region-like 2769 63.88 +1 2920004..2922046 + 680 99082610 - TM1040_2770 - hypothetical protein 2770 60.58 0 2922245..2923147 - 300 99082611 - TM1040_2771 - hydratase/decarboxylase 2771 63.87 +1 2923147..2925219 - 690 99082612 - TM1040_2772 - penicillin-binding protein 1C 2772 62.72 0 2925324..2930771 - 1815 99082613 - TM1040_2773 - alpha-2-macroglobulin-like 2773 58.09 0 2930923..2933208 + 761 99082614 - TM1040_2774 - histidine kinase 2774 60.85 0 2933253..2934611 - 452 99082615 - TM1040_2775 - dihydrolipoamide dehydrogenase 2775 61.22 0 2934612..2935877 - 421 99082616 - TM1040_2776 - branched-chain alpha-keto acid dehydrogenase E2 component 2776 59.96 0 2935882..2936895 - 337 99082617 - TM1040_2777 - branched-chain alpha-keto acid dehydrogenase E1 component 2777 61.35 0 2936897..2938138 - 413 99082618 - TM1040_2778 - branched-chain alpha-keto acid dehydrogenase E1 component 2778 59.85 0 2938135..2939205 - 356 99082619 - TM1040_2779 - Glu/Leu/Phe/Val dehydrogenase, dimerisation region 2779 58.55 0 2939325..2939792 + 155 99082620 - TM1040_2780 - AsnC family transcriptional regulator 2780 61.90 0 2939877..2941073 - 398 99082621 - TM1040_2781 - iron-containing alcohol dehydrogenase 2781 60.59 0 2941116..2942498 - 460 99082622 - TM1040_2782 - aldehyde dehydrogenase 2782 58.76 0 2942601..2943953 - 450 99082623 - TM1040_2783 - L-glutamine synthetase 2783 58.26 0 2944029..2945063 - 344 99082624 - TM1040_2784 - twin-arginine translocation pathway signal 2784 58.79 0 2945118..2946437 - 439 99082625 - TM1040_2785 - TRAP C4-dicarboxylate transport system permease DctM subunit 2785 55.78 -1 2946434..2947021 - 195 99082626 - TM1040_2786 - hypothetical protein 2786 60.85 0 2947018..2947791 - 257 99082627 - TM1040_2787 - N-formylglutamate amidohydrolase 2787 55.83 -1 2947896..2948753 + 285 99082628 - TM1040_2788 - RpiR family transcriptional regulator 2788 60.87 0 2948817..2949971 + 384 99082629 - TM1040_2789 - AMP-dependent synthetase and ligase 2789 64.22 +1 2949971..2951074 + 367 99082630 - TM1040_2790 - Acetyl-CoA C-acetyltransferase 2790 60.58 0 2951135..2953351 - 738 99082631 - TM1040_2791 - catalase/peroxidase HPI 2791 60.06 0 2953530..2954453 + 307 99082632 - TM1040_2792 - LysR family transcriptional regulator 2792 60.33 0 2954463..2955251 - 262 99082633 - TM1040_2793 - carnitinyl-CoA dehydratase 2793 61.96 0 2955248..2957287 - 679 99082634 - TM1040_2794 - CoA-binding 2794 54.29 -1 2957294..2957608 - 104 99082635 - TM1040_2795 - SelT/selW/selH selenoprotein 2795 58.58 0 2957611..2958810 - 399 99082636 - TM1040_2796 - butyryl-CoA dehydrogenase 2796 60.97 0 2958859..2959806 + 315 99082637 - TM1040_2797 - transcriptional regulator 2797 59.11 0 2959852..2960235 - 127 99082638 - TM1040_2798 - arsenate reductase and related 2798 60.02 0 2960323..2962128 + 601 99082639 - TM1040_2799 - adenine deaminase 2799 58.83 0 2962121..2963587 + 488 99082640 - TM1040_2800 - AMP nucleosidase 2800 58.16 0 2963731..2964024 + 97 99082641 - TM1040_2801 - histone-like DNA-binding protein 2801 61.87 0 2964165..2965082 + 305 99082642 - TM1040_2802 - hypothetical protein 2802 57.33 0 2965204..2965653 + 149 99082643 - TM1040_2803 - methionine sulfoxide reductase B 2803 55.81 -1 2965650..2966165 + 171 99082644 - TM1040_2804 - methionine sulfoxide reductase A 2804 62.08 0 2966243..2968249 - 668 99082645 - TM1040_2805 - hydantoinase/oxoprolinase 2805 59.67 0 2968323..2969366 - 347 99082646 - TM1040_2806 - hypothetical protein 2806 57.61 0 2969475..2970821 - 448 99082647 - TM1040_2807 - 6-aminohexanoate-dimer hydrolase 2807 57.61 0 2970802..2972226 - 474 99082648 - TM1040_2808 - hypothetical protein 2808 57.97 0 2972936..2973763 + 275 99082649 - TM1040_2809 - diaminopimelate epimerase 2809 58.61 0 2973760..2975025 + 421 99082650 - TM1040_2810 - MiaB-like tRNA modifying enzyme 2810 62.84 0 2975043..2975564 + 173 99082651 - TM1040_2811 - hypothetical protein 2811 59.34 0 2975706..2976497 - 263 99082652 - TM1040_2812 - cytochrome c1 2812 57.19 -1 2976516..2977844 - 442 99082653 - TM1040_2813 - cytochrome b/b6-like 2813 59.36 0 2977860..2978420 - 186 99082654 - TM1040_2814 - ubiquinol-cytochrome c reductase, iron-sulfur subunit 2814 57.38 0 2978645..2979247 - 200 99082655 - TM1040_2815 - glutathione S-transferase-like 2815 61.49 0 2979365..2980060 - 231 99082656 - TM1040_2816 - ABC transporter related 2816 62.60 0 2980047..2981618 - 523 99082657 thiP TM1040_2817 - thiamine transporter membrane protein 2817 58.21 0 2981594..2982574 - 326 99082658 tbpA TM1040_2818 - thiamine transporter substrate binding subunit 2818 59.12 0 2983051..2984163 + 370 99082659 - TM1040_2819 - chorismate synthase 2819 57.17 -1 2984942..2985931 + 329 99082660 - TM1040_2820 - 3-beta hydroxysteroid dehydrogenase/isomerase 2820 59.33 0 2985990..2986793 - 267 99082661 - TM1040_2821 - undecaprenyl-diphosphatase 2821 60.08 0 2987026..2988468 + 480 99082662 - TM1040_2822 - putative oxidoreductase 2822 60.40 0 2988543..2993075 + 1510 99082663 - TM1040_2823 - glutamate synthase (NADPH) large subunit 2823 60.08 0 2993220..2993963 + 247 99082664 - TM1040_2824 - monofunctional biosynthetic peptidoglycan transglycosylase 2824 56.61 -1 2994033..2994698 + 221 99082665 - TM1040_2825 - glutathione S-transferase-like 2825 61.28 0 2994998..2996482 - 494 99082666 - TM1040_2826 - HemY-like 2826 62.80 0 2996493..2997812 - 439 99082667 - TM1040_2827 - hypothetical protein 2827 61.25 0 2997862..2998599 - 245 99082668 - TM1040_2828 - uroporphyrinogen III synthase HEM4 2828 60.47 0 2998674..2999771 + 365 99082669 - TM1040_2829 - O-sialoglycoprotein endopeptidase 2829 62.20 0 2999768..3000730 + 320 99082670 - TM1040_2830 - glycerol-3-phosphate dehydrogenase (NAD(P)+) 2830 59.34 0 3000732..3001004 + 90 99082671 - TM1040_2831 - YciI-like protein 2831 53.66 -2 3001004..3001426 + 140 99082672 - TM1040_2832 - hypothetical protein 2832 56.57 -1 3001480..3001875 + 131 99082673 - TM1040_2833 - hypothetical protein 2833 51.75 -2 3002076..3002417 - 113 99082674 - TM1040_2834 - hypothetical protein 2834 56.49 -1 3002642..3004027 - 461 99082675 - TM1040_2835 - S-adenosyl-L-homocysteine hydrolase 2835 57.47 0 3004294..3004902 + 202 99082676 - TM1040_2836 - metal dependent phosphohydrolase 2836 61.41 0 3004905..3006122 - 405 99082677 - TM1040_2837 - hypothetical protein 2837 58.74 0 3006131..3006685 - 184 99082678 - TM1040_2838 - response regulator receiver protein 2838 58.01 0 3006766..3007389 - 207 99082679 - TM1040_2839 - electron transport protein SCO1/SenC 2839 58.23 0 3007508..3008905 + 465 99082680 - TM1040_2840 - periplasmic sensor signal transduction histidine kinase 2840 59.96 0 3008991..3010541 + 516 99082681 - TM1040_2841 - hypothetical protein 60.41 MEAN 3.16 STD DEV
Last Updated: Dec 04, 2008
Funding for this work was provided by the Peter Wall Institute for Advanced Studies. This service is hosted by the Brinkman Laboratory of the Department of Molecular Biology and Biochemistry at Simon Fraser University.
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1.0