version 1.0
Silicibacter sp. TM1040, complete genome - 1..3200938 3030 proteins Pos %G+C SD Location Strand Length PID Gene Synonym Code Product 2681 64.69 +1 2819870..2820934 - 354 99082522 - TM1040_2682 - DNA-O6-methylguanine--protein-cysteine S-methyltransferase / transcriptional regulator Ada 2682 64.16 +1 2821249..2822205 - 318 99082523 - TM1040_2683 - oligopeptide/dipeptide ABC transporter, ATP-binding protein-like 2683 63.91 +1 2822202..2824085 - 627 99082524 - TM1040_2684 - oligopeptide/dipeptide ABC transporter, ATP-binding protein-like 2684 59.28 0 2824082..2825029 - 315 99082525 - TM1040_2685 - binding-protein-dependent transport systems inner membrane component 2685 61.69 0 2825147..2826733 - 528 99082526 - TM1040_2686 - extracellular solute-binding protein 2686 65.48 +1 2826841..2827515 + 224 99082527 - TM1040_2687 - hypothetical protein 2687 60.95 0 2827522..2828361 - 279 99082528 - TM1040_2688 - GntR family transcriptional regulator 2688 64.21 +1 2828383..2829603 + 406 99082529 - TM1040_2689 - allantoate amidohydrolase 2689 61.33 0 2829620..2831923 - 767 99082530 - TM1040_2690 - hemolysin-type calcium-binding region 2690 61.28 0 2832091..2833464 - 457 99082531 - TM1040_2691 - hypothetical protein 2691 61.92 0 2833528..2835003 - 491 99082532 - TM1040_2692 - succinate semialdehyde dehydrogenase 2692 59.79 0 2835087..2835566 - 159 99082533 - TM1040_2693 - AsnC family transcriptional regulator 2693 61.53 0 2835568..2836560 - 330 99082534 - TM1040_2694 - succinylglutamate desuccinylase/aspartoacylase 2694 62.02 0 2836696..2837706 - 336 99082535 - TM1040_2695 - AraC family transcriptional regulator 2695 60.39 0 2837919..2838587 + 222 99082536 - TM1040_2696 - CHAP 2696 57.48 0 2838703..2839605 - 300 99082537 - TM1040_2697 - PRC-barrel 2697 62.99 0 2839728..2840570 - 280 99082538 - TM1040_2698 - IclR family transcriptional regulator 2698 62.97 0 2840738..2841928 + 396 99082539 - TM1040_2699 - serine-glyoxylate aminotransferase 2699 61.70 0 2841928..2842893 + 321 99082540 - TM1040_2700 - pyridoxal-5'-phosphate-dependent enzyme, beta subunit 2700 60.65 0 2842959..2844122 + 387 99082541 - TM1040_2701 - D-3-hydroxyaspartate aldolase 2701 62.94 0 2844218..2845183 + 321 99082542 - TM1040_2702 - ornithine cyclodeaminase 2702 59.54 0 2845236..2846147 - 303 99082543 - TM1040_2703 - LysR family transcriptional regulator 2703 63.93 +1 2846327..2847790 + 487 99082544 - TM1040_2704 - molybdopterin dehydrogenase, FAD-binding 2704 62.47 0 2847805..2850138 + 777 99082545 - TM1040_2705 - xanthine oxidase / xanthine dehydrogenase, molybdenum binding subunit apoprotein 2705 65.38 +1 2850143..2850994 + 283 99082546 - TM1040_2706 - hypothetical protein 2706 61.17 0 2851063..2852646 + 527 99082547 - TM1040_2707 - xanthine/uracil/vitamin C permease 2707 61.11 0 2852734..2853201 - 155 99082548 - TM1040_2708 - AsnC family transcriptional regulator 2708 64.78 +1 2853377..2854435 + 352 99082549 - TM1040_2709 - pyridoxal-5'-phosphate-dependent enzyme, beta subunit 2709 62.20 0 2854428..2855591 + 387 99082550 - TM1040_2710 - peptidase M24 2710 63.90 +1 2855588..2856346 + 252 99082551 - TM1040_2711 - Asp/Glu racemase 2711 63.13 0 2856397..2857500 - 367 99082552 - TM1040_2712 - peptidase M24 2712 60.06 0 2857581..2859170 - 529 99082553 - TM1040_2713 - extracellular solute-binding protein 2713 60.16 0 2859216..2859830 - 204 99082554 - TM1040_2714 - XRE family transcriptional regulator 2714 60.07 0 2859969..2861120 + 383 99082555 - TM1040_2715 - binding-protein-dependent transport systems inner membrane component 2715 62.47 0 2861130..2862035 + 301 99082556 - TM1040_2716 - binding-protein-dependent transport systems inner membrane component 2716 62.50 0 2862032..2862871 + 279 99082557 - TM1040_2717 - ABC transporter related 2717 59.73 0 2862868..2863617 + 249 99082558 - TM1040_2718 - ABC transporter related 2718 59.10 0 2863621..2864109 + 162 99082559 - TM1040_2719 - hypothetical protein 2719 57.99 0 2864282..2864500 + 72 99082560 - TM1040_2720 - hypothetical protein 2720 58.23 0 2864555..2865052 + 165 99082561 - TM1040_2721 - Ferritin and Dps 2721 59.00 0 2865208..2866029 - 273 99082562 - TM1040_2722 - two-component response regulator 2722 58.78 0 2866340..2866897 + 185 99082563 - TM1040_2723 - RNA polymerase sigma factor 2723 57.60 0 2866903..2868744 + 613 99082564 - TM1040_2724 - signal transduction histidine kinase 2724 62.07 0 2868869..2869456 - 195 99082565 - TM1040_2725 - exopolysaccharide synthesis, ExoD 2725 59.10 0 2869670..2870158 + 162 99082566 - TM1040_2726 - hypothetical protein 2726 61.22 0 2870342..2871370 - 342 99082567 - TM1040_2727 - putative ammonia monooxygenase 2727 63.15 0 2871357..2872124 - 255 99082568 - TM1040_2728 - citrate synthase 2728 61.87 0 2872121..2873308 - 395 99082569 - TM1040_2729 - L-carnitine dehydratase/bile acid-inducible protein F 2729 60.36 0 2873298..2874818 - 506 99082570 - TM1040_2730 - hypothetical protein 2730 60.08 0 2874831..2875316 - 161 99082571 - TM1040_2731 - hypothetical protein 2731 61.77 0 2875403..2876383 - 326 99082572 - TM1040_2732 - hypothetical protein 2732 57.06 -1 2876423..2877151 + 242 99082573 - TM1040_2733 - two component transcriptional regulator 2733 61.62 0 2877148..2878533 + 461 99082574 - TM1040_2734 - periplasmic sensor signal transduction histidine kinase 2734 59.98 0 2878629..2879540 + 303 99082575 - TM1040_2735 - putative iron(III) transport system substrate-binding protein 2735 63.44 0 2879545..2881929 - 794 99082576 - TM1040_2736 - transketolase, putative 2736 62.76 0 2881941..2883143 - 400 99082577 - TM1040_2737 - methionine gamma-lyase 2737 57.95 0 2883257..2883715 + 152 99082578 - TM1040_2738 - AsnC family transcriptional regulator 2738 61.09 0 2883772..2885655 - 627 99082579 - TM1040_2739 - Beta-N-acetylhexosaminidase 2739 61.62 0 2885691..2886146 - 151 99082580 - TM1040_2740 - GCN5-related N-acetyltransferase 2740 63.23 0 2886139..2887068 - 309 99082581 - TM1040_2741 - ABC transporter related 2741 62.48 0 2887058..2887870 - 270 99082582 - TM1040_2742 - ABC transporter related 2742 60.95 0 2887867..2888775 - 302 99082583 - TM1040_2743 - binding-protein-dependent transport systems inner membrane component 2743 60.97 0 2888775..2889809 - 344 99082584 - TM1040_2744 - binding-protein-dependent transport systems inner membrane component 2744 58.70 0 2889841..2891496 - 551 99082585 - TM1040_2745 - extracellular solute-binding protein 2745 62.11 0 2891848..2895138 + 1096 99082586 - TM1040_2746 - multi-sensor hybrid histidine kinase 2746 64.34 +1 2895144..2896046 - 300 99082587 - TM1040_2747 - RpiR family transcriptional regulator 2747 60.73 0 2896222..2896743 + 173 99082588 - TM1040_2748 - tripartite ATP-independent periplasmic transporter DctQ 2748 59.44 0 2896740..2898026 + 428 99082589 - TM1040_2749 - TRAP dicarboxylate transporter- DctM subunit 2749 60.73 0 2898076..2899119 + 347 99082590 - TM1040_2750 - TRAP dicarboxylate transporter, DctP subunit 2750 61.62 0 2899183..2900649 + 488 99082591 - TM1040_2751 - hypothetical protein 2751 61.93 0 2900649..2901704 + 351 99082592 - TM1040_2752 - alanine racemase-like 2752 61.60 0 2901701..2902627 + 308 99082593 - TM1040_2753 - PfkB 2753 61.54 0 2902654..2903043 + 129 99082594 - TM1040_2754 - endoribonuclease L-PSP 2754 60.54 0 2903128..2904465 - 445 99082595 - TM1040_2755 - carboxyl-terminal protease 2755 63.77 +1 2904473..2905576 - 367 99082596 - TM1040_2756 - peptidase M23B 2756 61.14 0 2905615..2907135 - 506 99082597 - TM1040_2757 - phosphoglyceromutase 2757 59.74 0 2907361..2907822 + 153 99082598 - TM1040_2758 - hypothetical protein 2758 62.24 0 2907826..2908299 - 157 99082599 - TM1040_2759 - acetyltransferase 2759 61.76 0 2908299..2909255 - 318 99082600 - TM1040_2760 - ABC transporter related 2760 56.83 -1 2909299..2909481 + 60 99082601 - TM1040_2761 - hypothetical protein 2761 63.58 +1 2909535..2910020 + 161 99082602 - TM1040_2762 - hypothetical protein 2762 54.87 -1 2910088..2910621 - 177 99082603 - TM1040_2763 - hypothetical protein 2763 61.25 0 2910652..2913459 + 935 99082604 - TM1040_2764 - DNA polymerase I 2764 59.24 0 2913628..2914395 - 255 99082605 - TM1040_2765 - hydroxypyruvate isomerase 2765 56.23 -1 2914614..2915207 - 197 99082606 - TM1040_2766 - hypothetical protein 2766 63.19 0 2915260..2916267 + 335 99082607 - TM1040_2767 - ATPase 2767 64.47 +1 2916264..2917172 + 302 99082608 - TM1040_2768 - hypothetical protein 2768 63.44 0 2917169..2919958 + 929 99082609 - TM1040_2769 - double-transmembrane region-like 2769 63.88 +1 2920004..2922046 + 680 99082610 - TM1040_2770 - hypothetical protein 2770 60.58 0 2922245..2923147 - 300 99082611 - TM1040_2771 - hydratase/decarboxylase 2771 63.87 +1 2923147..2925219 - 690 99082612 - TM1040_2772 - penicillin-binding protein 1C 2772 62.72 0 2925324..2930771 - 1815 99082613 - TM1040_2773 - alpha-2-macroglobulin-like 2773 58.09 0 2930923..2933208 + 761 99082614 - TM1040_2774 - histidine kinase 2774 60.85 0 2933253..2934611 - 452 99082615 - TM1040_2775 - dihydrolipoamide dehydrogenase 2775 61.22 0 2934612..2935877 - 421 99082616 - TM1040_2776 - branched-chain alpha-keto acid dehydrogenase E2 component 2776 59.96 0 2935882..2936895 - 337 99082617 - TM1040_2777 - branched-chain alpha-keto acid dehydrogenase E1 component 2777 61.35 0 2936897..2938138 - 413 99082618 - TM1040_2778 - branched-chain alpha-keto acid dehydrogenase E1 component 2778 59.85 0 2938135..2939205 - 356 99082619 - TM1040_2779 - Glu/Leu/Phe/Val dehydrogenase, dimerisation region 2779 58.55 0 2939325..2939792 + 155 99082620 - TM1040_2780 - AsnC family transcriptional regulator 2780 61.90 0 2939877..2941073 - 398 99082621 - TM1040_2781 - iron-containing alcohol dehydrogenase 60.41 MEAN 3.16 STD DEV
Last Updated: Dec 04, 2008
Funding for this work was provided by the Peter Wall Institute for Advanced Studies. This service is hosted by the Brinkman Laboratory of the Department of Molecular Biology and Biochemistry at Simon Fraser University.
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1.0