version 1.0
Silicibacter sp. TM1040, complete genome - 1..3200938 3030 proteins Pos %G+C SD Location Strand Length PID Gene Synonym Code Product 2640 65.16 +1 2775250..2776446 + 398 99082481 - TM1040_2641 - 3-deoxy-D-manno-octulosonic-acid transferase, putative 2641 68.06 +2 2776433..2777434 + 333 99082482 - TM1040_2642 - lipid-A-disaccharide synthase 2642 59.26 0 2777471..2778172 - 233 99082483 - TM1040_2643 - DsbA family thiol:disulfide interchange protein 2643 60.80 0 2778169..2778696 - 175 99082484 - TM1040_2644 - hypothetical protein 2644 66.10 +1 2778782..2779843 + 353 99082485 - TM1040_2645 - A/G-specific DNA-adenine glycosylase 2645 61.42 0 2779924..2781066 + 380 99082486 - TM1040_2646 - alkane 1-monooxygenase 2646 59.65 0 2781272..2782768 - 498 99082487 - TM1040_2647 - methyl-accepting chemotaxis sensory transducer 2647 61.86 0 2782796..2784190 - 464 99082488 - TM1040_2648 - adenylate/guanylate cyclase 2648 59.06 0 2784374..2785543 - 389 99082489 - TM1040_2649 - DNA methylase N-4/N-6 2649 61.59 0 2785589..2786278 - 229 99082490 - TM1040_2650 - RNase HII 2650 64.53 +1 2786322..2786789 - 155 99082491 - TM1040_2651 - hypothetical protein 2651 60.54 0 2786968..2787261 + 97 99082492 - TM1040_2652 - hypothetical protein 2652 60.40 0 2787233..2787934 + 233 99082493 - TM1040_2653 - putative transcriptional regulator, CadC 2653 62.81 0 2788187..2789740 + 517 99082494 - TM1040_2654 - adenylate/guanylate cyclase 2654 65.21 +1 2789859..2791367 - 502 99082495 - TM1040_2655 - aldehyde dehydrogenase 2655 61.23 0 2791376..2792497 - 373 99082496 - TM1040_2656 - saccharopine dehydrogenase 2656 60.61 0 2792625..2793053 - 142 99082497 - TM1040_2657 - AsnC family transcriptional regulator 2657 64.55 +1 2793057..2793812 - 251 99082498 - TM1040_2658 - hypothetical protein 2658 65.34 +1 2793914..2795953 - 679 99082499 - TM1040_2659 - ATP-dependent DNA helicase RecQ 2659 54.55 -1 2796082..2796411 - 109 99082500 - TM1040_2660 - hypothetical protein 2660 63.21 0 2796504..2797082 + 192 99082501 - TM1040_2661 - hypothetical protein 2661 60.88 0 2797133..2798515 + 460 99082502 - TM1040_2662 - major facilitator transporter 2662 65.26 +1 2798512..2799435 + 307 99082503 mepA TM1040_2663 - penicillin-insensitive murein endopeptidase 2663 63.97 +1 2799408..2800334 + 308 99082504 - TM1040_2664 - hypothetical protein 2664 63.03 0 2800489..2801121 + 210 99082505 - TM1040_2665 - hypothetical protein 2665 64.29 +1 2801738..2802157 + 139 99082506 - TM1040_2666 - hypothetical protein 2666 68.62 +2 2802298..2803320 + 340 99082507 - TM1040_2667 - peptidase S58, DmpA 2667 62.41 0 2803833..2804795 + 320 99082508 - TM1040_2668 - hypothetical protein 2668 62.00 0 2804811..2805431 + 206 99082509 - TM1040_2669 - HAD family hydrolase 2669 63.29 0 2805428..2806345 + 305 99082510 - TM1040_2670 - ornithine cyclodeaminase 2670 62.38 0 2806342..2807274 + 310 99082511 - TM1040_2671 - alpha/beta hydrolase fold 2671 63.76 +1 2807277..2808515 - 412 99082512 - TM1040_2672 - major facilitator transporter 2672 61.78 0 2808684..2809748 + 354 99082513 - TM1040_2673 - AFG1-like ATPase 2673 66.54 +1 2809876..2810637 + 253 99082514 - TM1040_2674 - DeoR family transcriptional regulator 2674 65.88 +1 2810634..2811905 - 423 99082515 - TM1040_2675 - FolC bifunctional protein 2675 62.10 0 2812060..2813022 - 320 99082516 - TM1040_2676 - acetyl-coenzyme A carboxylase carboxyl transferase subunit alpha 2676 65.54 +1 2813085..2813969 - 294 99082517 - TM1040_2677 - abortive infection protein 2677 63.85 +1 2814095..2817148 - 1017 99082518 - TM1040_2678 - cyclic nucleotide-binding protein 2678 66.92 +2 2817505..2818284 + 259 99082519 - TM1040_2679 - hypothetical protein 2679 62.34 0 2818500..2819261 + 253 99082520 - TM1040_2680 - hypothetical protein 2680 64.81 +1 2819297..2819674 + 125 99082521 - TM1040_2681 - hypothetical protein 2681 64.69 +1 2819870..2820934 - 354 99082522 - TM1040_2682 - DNA-O6-methylguanine--protein-cysteine S-methyltransferase / transcriptional regulator Ada 2682 64.16 +1 2821249..2822205 - 318 99082523 - TM1040_2683 - oligopeptide/dipeptide ABC transporter, ATP-binding protein-like 2683 63.91 +1 2822202..2824085 - 627 99082524 - TM1040_2684 - oligopeptide/dipeptide ABC transporter, ATP-binding protein-like 2684 59.28 0 2824082..2825029 - 315 99082525 - TM1040_2685 - binding-protein-dependent transport systems inner membrane component 2685 61.69 0 2825147..2826733 - 528 99082526 - TM1040_2686 - extracellular solute-binding protein 2686 65.48 +1 2826841..2827515 + 224 99082527 - TM1040_2687 - hypothetical protein 2687 60.95 0 2827522..2828361 - 279 99082528 - TM1040_2688 - GntR family transcriptional regulator 2688 64.21 +1 2828383..2829603 + 406 99082529 - TM1040_2689 - allantoate amidohydrolase 2689 61.33 0 2829620..2831923 - 767 99082530 - TM1040_2690 - hemolysin-type calcium-binding region 2690 61.28 0 2832091..2833464 - 457 99082531 - TM1040_2691 - hypothetical protein 2691 61.92 0 2833528..2835003 - 491 99082532 - TM1040_2692 - succinate semialdehyde dehydrogenase 2692 59.79 0 2835087..2835566 - 159 99082533 - TM1040_2693 - AsnC family transcriptional regulator 2693 61.53 0 2835568..2836560 - 330 99082534 - TM1040_2694 - succinylglutamate desuccinylase/aspartoacylase 2694 62.02 0 2836696..2837706 - 336 99082535 - TM1040_2695 - AraC family transcriptional regulator 2695 60.39 0 2837919..2838587 + 222 99082536 - TM1040_2696 - CHAP 2696 57.48 0 2838703..2839605 - 300 99082537 - TM1040_2697 - PRC-barrel 2697 62.99 0 2839728..2840570 - 280 99082538 - TM1040_2698 - IclR family transcriptional regulator 2698 62.97 0 2840738..2841928 + 396 99082539 - TM1040_2699 - serine-glyoxylate aminotransferase 2699 61.70 0 2841928..2842893 + 321 99082540 - TM1040_2700 - pyridoxal-5'-phosphate-dependent enzyme, beta subunit 2700 60.65 0 2842959..2844122 + 387 99082541 - TM1040_2701 - D-3-hydroxyaspartate aldolase 2701 62.94 0 2844218..2845183 + 321 99082542 - TM1040_2702 - ornithine cyclodeaminase 2702 59.54 0 2845236..2846147 - 303 99082543 - TM1040_2703 - LysR family transcriptional regulator 2703 63.93 +1 2846327..2847790 + 487 99082544 - TM1040_2704 - molybdopterin dehydrogenase, FAD-binding 2704 62.47 0 2847805..2850138 + 777 99082545 - TM1040_2705 - xanthine oxidase / xanthine dehydrogenase, molybdenum binding subunit apoprotein 2705 65.38 +1 2850143..2850994 + 283 99082546 - TM1040_2706 - hypothetical protein 2706 61.17 0 2851063..2852646 + 527 99082547 - TM1040_2707 - xanthine/uracil/vitamin C permease 2707 61.11 0 2852734..2853201 - 155 99082548 - TM1040_2708 - AsnC family transcriptional regulator 2708 64.78 +1 2853377..2854435 + 352 99082549 - TM1040_2709 - pyridoxal-5'-phosphate-dependent enzyme, beta subunit 2709 62.20 0 2854428..2855591 + 387 99082550 - TM1040_2710 - peptidase M24 2710 63.90 +1 2855588..2856346 + 252 99082551 - TM1040_2711 - Asp/Glu racemase 2711 63.13 0 2856397..2857500 - 367 99082552 - TM1040_2712 - peptidase M24 2712 60.06 0 2857581..2859170 - 529 99082553 - TM1040_2713 - extracellular solute-binding protein 2713 60.16 0 2859216..2859830 - 204 99082554 - TM1040_2714 - XRE family transcriptional regulator 2714 60.07 0 2859969..2861120 + 383 99082555 - TM1040_2715 - binding-protein-dependent transport systems inner membrane component 2715 62.47 0 2861130..2862035 + 301 99082556 - TM1040_2716 - binding-protein-dependent transport systems inner membrane component 2716 62.50 0 2862032..2862871 + 279 99082557 - TM1040_2717 - ABC transporter related 2717 59.73 0 2862868..2863617 + 249 99082558 - TM1040_2718 - ABC transporter related 2718 59.10 0 2863621..2864109 + 162 99082559 - TM1040_2719 - hypothetical protein 2719 57.99 0 2864282..2864500 + 72 99082560 - TM1040_2720 - hypothetical protein 2720 58.23 0 2864555..2865052 + 165 99082561 - TM1040_2721 - Ferritin and Dps 2721 59.00 0 2865208..2866029 - 273 99082562 - TM1040_2722 - two-component response regulator 2722 58.78 0 2866340..2866897 + 185 99082563 - TM1040_2723 - RNA polymerase sigma factor 2723 57.60 0 2866903..2868744 + 613 99082564 - TM1040_2724 - signal transduction histidine kinase 2724 62.07 0 2868869..2869456 - 195 99082565 - TM1040_2725 - exopolysaccharide synthesis, ExoD 2725 59.10 0 2869670..2870158 + 162 99082566 - TM1040_2726 - hypothetical protein 2726 61.22 0 2870342..2871370 - 342 99082567 - TM1040_2727 - putative ammonia monooxygenase 2727 63.15 0 2871357..2872124 - 255 99082568 - TM1040_2728 - citrate synthase 2728 61.87 0 2872121..2873308 - 395 99082569 - TM1040_2729 - L-carnitine dehydratase/bile acid-inducible protein F 2729 60.36 0 2873298..2874818 - 506 99082570 - TM1040_2730 - hypothetical protein 2730 60.08 0 2874831..2875316 - 161 99082571 - TM1040_2731 - hypothetical protein 2731 61.77 0 2875403..2876383 - 326 99082572 - TM1040_2732 - hypothetical protein 2732 57.06 -1 2876423..2877151 + 242 99082573 - TM1040_2733 - two component transcriptional regulator 2733 61.62 0 2877148..2878533 + 461 99082574 - TM1040_2734 - periplasmic sensor signal transduction histidine kinase 2734 59.98 0 2878629..2879540 + 303 99082575 - TM1040_2735 - putative iron(III) transport system substrate-binding protein 2735 63.44 0 2879545..2881929 - 794 99082576 - TM1040_2736 - transketolase, putative 2736 62.76 0 2881941..2883143 - 400 99082577 - TM1040_2737 - methionine gamma-lyase 2737 57.95 0 2883257..2883715 + 152 99082578 - TM1040_2738 - AsnC family transcriptional regulator 2738 61.09 0 2883772..2885655 - 627 99082579 - TM1040_2739 - Beta-N-acetylhexosaminidase 2739 61.62 0 2885691..2886146 - 151 99082580 - TM1040_2740 - GCN5-related N-acetyltransferase 60.41 MEAN 3.16 STD DEV
Last Updated: Dec 04, 2008
Funding for this work was provided by the Peter Wall Institute for Advanced Studies. This service is hosted by the Brinkman Laboratory of the Department of Molecular Biology and Biochemistry at Simon Fraser University.
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