version 1.0
Silicibacter sp. TM1040, complete genome - 1..3200938 3030 proteins Pos %G+C SD Location Strand Length PID Gene Synonym Code Product 2586 64.41 +1 2724658..2728113 - 1151 99082427 - TM1040_2587 - chromosome segregation protein SMC 2587 61.07 0 2728243..2729457 - 404 99082428 - TM1040_2588 - aminotransferase, class I and II 2588 58.98 0 2729612..2730379 + 255 99082429 - TM1040_2589 - GntR family transcriptional regulator 2589 60.83 0 2730376..2731197 - 273 99082430 - TM1040_2590 - ABC transporter related 2590 61.11 0 2731437..2731994 - 185 99082431 - TM1040_2591 - F0F1 ATP synthase subunit B 2591 60.81 0 2731997..2732542 - 181 99082432 - TM1040_2592 - F0F1 ATP synthase subunit B' 2592 60.00 0 2732629..2732853 - 74 99082433 - TM1040_2593 - F0F1 ATP synthase subunit C 2593 57.34 0 2732910..2733713 - 267 99082434 - TM1040_2594 - F0F1 ATP synthase subunit A 2594 58.77 0 2733753..2734094 - 113 99082435 - TM1040_2595 - ATP synthase F0, subunit I 2595 64.19 +1 2734304..2735191 - 295 99082436 - TM1040_2596 - hypothetical protein 2596 59.39 0 2735291..2735620 + 109 99082437 - TM1040_2597 - ArsR family transcriptional regulator 2597 62.39 0 2735663..2736574 - 303 99082438 - TM1040_2598 - hypothetical protein 2598 62.00 0 2736583..2737461 - 292 99082439 - TM1040_2599 - LysR family transcriptional regulator 2599 60.82 0 2737602..2738183 + 193 99082440 - TM1040_2600 - (Acyl-carrier protein) phosphodiesterase 2600 60.45 0 2738369..2738899 - 176 99082441 - TM1040_2601 - Ala-tRNA(Pro) hydrolase 2601 62.34 0 2738987..2739772 - 261 99082442 - TM1040_2602 - hypothetical protein 2602 62.27 0 2740131..2741675 + 514 99082443 - TM1040_2603 - signal recognition particle subunit FFH/SRP54 (srp54) 2603 62.52 0 2741685..2742215 + 176 99082444 - TM1040_2604 - GCN5-related N-acetyltransferase 2604 62.38 0 2742212..2742817 + 201 99082445 - TM1040_2605 - hypothetical protein 2605 59.87 0 2742810..2743118 + 102 99082446 - TM1040_2606 - chorismate mutase 2606 60.66 0 2743178..2743543 + 121 99082447 rpsP TM1040_2607 - 30S ribosomal protein S16 2607 66.21 +1 2743548..2744201 + 217 99082448 - TM1040_2608 - Cob(II)yrinic acid a,c-diamide reductase 2608 64.15 +1 2744391..2744906 + 171 99082449 - TM1040_2609 - 16S rRNA processing protein RimM 2609 60.73 0 2744907..2745917 - 336 99082450 - TM1040_2610 - hypothetical protein 2610 62.55 0 2745980..2746780 + 266 99082451 - TM1040_2611 - tRNA (Guanine37-N(1)-) methyltransferase 2611 59.80 0 2746781..2747173 - 130 99082452 - TM1040_2612 - hypothetical protein 2612 60.06 0 2747330..2747662 + 110 99082453 - TM1040_2613 - hypothetical protein 2613 59.86 0 2747739..2748164 - 141 99082454 - TM1040_2614 - MerR family transcriptional regulator 2614 66.42 +1 2748232..2749446 + 404 99082455 - TM1040_2615 - major facilitator transporter 2615 59.41 0 2749710..2750081 + 123 99082456 rplS TM1040_2616 - 50S ribosomal protein L19 2616 56.76 -1 2750093..2750314 + 73 99082457 rpmE TM1040_2617 - 50S ribosomal protein L31 2617 59.88 0 2750599..2751408 + 269 99082458 - TM1040_2618 - putative chromosome partitioning protein 2618 62.22 0 2751599..2752744 - 381 99082459 - TM1040_2619 - adenylate/guanylate cyclase 2619 60.13 0 2752842..2753300 - 152 99082460 - TM1040_2620 - MarR family transcriptional regulator 2620 58.92 0 2753377..2754732 + 451 99082461 - TM1040_2621 - homogentisate 1,2-dioxygenase 2621 62.53 0 2754850..2756106 + 418 99082462 - TM1040_2622 - fumarylacetoacetate hydrolase 2622 62.46 0 2756189..2757139 + 316 99082463 - TM1040_2623 - beta-lactamase-like 2623 62.94 0 2757262..2758869 + 535 99082464 - TM1040_2624 - hypothetical protein 2624 60.87 0 2758875..2759081 + 68 99082465 - TM1040_2625 - hypothetical protein 2625 66.67 +1 2759074..2759721 + 215 99082466 - TM1040_2626 - maleylacetoacetate isomerase 2626 64.94 +1 2759858..2761072 + 404 99082467 - TM1040_2627 - protein of unknown function UPF0052 and CofD 2627 64.49 +1 2761148..2763355 - 735 99082468 - TM1040_2628 - penicillin-binding protein 1A 2628 56.05 -1 2763645..2763983 + 112 99082469 - TM1040_2629 - nitrogen regulatory protein P-II 2629 61.90 0 2764013..2765335 + 440 99082470 - TM1040_2630 - ammonium transporter 2630 64.19 +1 2765408..2766052 - 214 99082471 - TM1040_2631 - ribonuclease T2 2631 60.42 0 2766222..2766989 + 255 99082472 - TM1040_2632 - hypothetical protein 2632 65.67 +1 2767201..2767701 + 166 99082473 - TM1040_2633 - hypothetical protein 2633 63.85 +1 2767830..2768681 + 283 99082474 - TM1040_2634 - 3-mercaptopyruvate sulfurtransferase 2634 62.11 0 2768685..2769869 + 394 99082475 - TM1040_2635 - aromatic amino acid aminotransferase 2635 67.15 +2 2769971..2770585 - 204 99082476 - TM1040_2636 - enoyl-CoA hydratase/isomerase 2636 63.47 0 2770582..2771331 - 249 99082477 - TM1040_2637 - short-chain dehydrogenase/reductase SDR 2637 59.41 0 2771466..2772980 + 504 99082478 - TM1040_2638 - hypothetical protein 2638 66.60 +1 2773042..2774463 + 473 99082479 - TM1040_2639 - microcin-processing peptidase 1 2639 67.79 +2 2774450..2775250 + 266 99082480 - TM1040_2640 - inositol monophosphatase 2640 65.16 +1 2775250..2776446 + 398 99082481 - TM1040_2641 - 3-deoxy-D-manno-octulosonic-acid transferase, putative 2641 68.06 +2 2776433..2777434 + 333 99082482 - TM1040_2642 - lipid-A-disaccharide synthase 2642 59.26 0 2777471..2778172 - 233 99082483 - TM1040_2643 - DsbA family thiol:disulfide interchange protein 2643 60.80 0 2778169..2778696 - 175 99082484 - TM1040_2644 - hypothetical protein 2644 66.10 +1 2778782..2779843 + 353 99082485 - TM1040_2645 - A/G-specific DNA-adenine glycosylase 2645 61.42 0 2779924..2781066 + 380 99082486 - TM1040_2646 - alkane 1-monooxygenase 2646 59.65 0 2781272..2782768 - 498 99082487 - TM1040_2647 - methyl-accepting chemotaxis sensory transducer 2647 61.86 0 2782796..2784190 - 464 99082488 - TM1040_2648 - adenylate/guanylate cyclase 2648 59.06 0 2784374..2785543 - 389 99082489 - TM1040_2649 - DNA methylase N-4/N-6 2649 61.59 0 2785589..2786278 - 229 99082490 - TM1040_2650 - RNase HII 2650 64.53 +1 2786322..2786789 - 155 99082491 - TM1040_2651 - hypothetical protein 2651 60.54 0 2786968..2787261 + 97 99082492 - TM1040_2652 - hypothetical protein 2652 60.40 0 2787233..2787934 + 233 99082493 - TM1040_2653 - putative transcriptional regulator, CadC 2653 62.81 0 2788187..2789740 + 517 99082494 - TM1040_2654 - adenylate/guanylate cyclase 2654 65.21 +1 2789859..2791367 - 502 99082495 - TM1040_2655 - aldehyde dehydrogenase 2655 61.23 0 2791376..2792497 - 373 99082496 - TM1040_2656 - saccharopine dehydrogenase 2656 60.61 0 2792625..2793053 - 142 99082497 - TM1040_2657 - AsnC family transcriptional regulator 2657 64.55 +1 2793057..2793812 - 251 99082498 - TM1040_2658 - hypothetical protein 2658 65.34 +1 2793914..2795953 - 679 99082499 - TM1040_2659 - ATP-dependent DNA helicase RecQ 2659 54.55 -1 2796082..2796411 - 109 99082500 - TM1040_2660 - hypothetical protein 2660 63.21 0 2796504..2797082 + 192 99082501 - TM1040_2661 - hypothetical protein 2661 60.88 0 2797133..2798515 + 460 99082502 - TM1040_2662 - major facilitator transporter 2662 65.26 +1 2798512..2799435 + 307 99082503 mepA TM1040_2663 - penicillin-insensitive murein endopeptidase 2663 63.97 +1 2799408..2800334 + 308 99082504 - TM1040_2664 - hypothetical protein 2664 63.03 0 2800489..2801121 + 210 99082505 - TM1040_2665 - hypothetical protein 2665 64.29 +1 2801738..2802157 + 139 99082506 - TM1040_2666 - hypothetical protein 2666 68.62 +2 2802298..2803320 + 340 99082507 - TM1040_2667 - peptidase S58, DmpA 2667 62.41 0 2803833..2804795 + 320 99082508 - TM1040_2668 - hypothetical protein 2668 62.00 0 2804811..2805431 + 206 99082509 - TM1040_2669 - HAD family hydrolase 2669 63.29 0 2805428..2806345 + 305 99082510 - TM1040_2670 - ornithine cyclodeaminase 2670 62.38 0 2806342..2807274 + 310 99082511 - TM1040_2671 - alpha/beta hydrolase fold 2671 63.76 +1 2807277..2808515 - 412 99082512 - TM1040_2672 - major facilitator transporter 2672 61.78 0 2808684..2809748 + 354 99082513 - TM1040_2673 - AFG1-like ATPase 2673 66.54 +1 2809876..2810637 + 253 99082514 - TM1040_2674 - DeoR family transcriptional regulator 2674 65.88 +1 2810634..2811905 - 423 99082515 - TM1040_2675 - FolC bifunctional protein 2675 62.10 0 2812060..2813022 - 320 99082516 - TM1040_2676 - acetyl-coenzyme A carboxylase carboxyl transferase subunit alpha 2676 65.54 +1 2813085..2813969 - 294 99082517 - TM1040_2677 - abortive infection protein 2677 63.85 +1 2814095..2817148 - 1017 99082518 - TM1040_2678 - cyclic nucleotide-binding protein 2678 66.92 +2 2817505..2818284 + 259 99082519 - TM1040_2679 - hypothetical protein 2679 62.34 0 2818500..2819261 + 253 99082520 - TM1040_2680 - hypothetical protein 2680 64.81 +1 2819297..2819674 + 125 99082521 - TM1040_2681 - hypothetical protein 2681 64.69 +1 2819870..2820934 - 354 99082522 - TM1040_2682 - DNA-O6-methylguanine--protein-cysteine S-methyltransferase / transcriptional regulator Ada 2682 64.16 +1 2821249..2822205 - 318 99082523 - TM1040_2683 - oligopeptide/dipeptide ABC transporter, ATP-binding protein-like 2683 63.91 +1 2822202..2824085 - 627 99082524 - TM1040_2684 - oligopeptide/dipeptide ABC transporter, ATP-binding protein-like 2684 59.28 0 2824082..2825029 - 315 99082525 - TM1040_2685 - binding-protein-dependent transport systems inner membrane component 2685 61.69 0 2825147..2826733 - 528 99082526 - TM1040_2686 - extracellular solute-binding protein 60.41 MEAN 3.16 STD DEV
Last Updated: Dec 04, 2008
Funding for this work was provided by the Peter Wall Institute for Advanced Studies. This service is hosted by the Brinkman Laboratory of the Department of Molecular Biology and Biochemistry at Simon Fraser University.
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