version 1.0
Silicibacter sp. TM1040, complete genome - 1..3200938 3030 proteins Pos %G+C SD Location Strand Length PID Gene Synonym Code Product 2511 61.59 0 2653223..2654206 + 327 99082352 - TM1040_2512 - putative adenylate/guanylate cyclase 2512 60.11 0 2654320..2654685 - 121 99082353 rplT TM1040_2513 - 50S ribosomal protein L20 2513 55.72 -1 2654701..2654901 - 66 99082354 rpmI TM1040_2514 - 50S ribosomal protein L35 2514 58.56 0 2655018..2655239 - 73 99082355 - TM1040_2515 - hypothetical protein 2515 60.17 0 2655276..2656721 - 481 99082356 - TM1040_2516 - pyruvate kinase 2516 63.38 0 2657069..2658073 - 334 99082357 - TM1040_2517 - zinc-binding alcohol dehydrogenase 2517 60.06 0 2658190..2658900 - 236 99082358 - TM1040_2518 - RpsU-divergently transcribed 2518 57.00 -1 2659018..2659224 + 68 99082359 rpsU TM1040_2519 - 30S ribosomal protein S21 2519 58.60 0 2659370..2661277 - 635 99082360 uvrC TM1040_2520 - excinuclease ABC subunit C 2520 63.32 0 2661587..2662363 - 258 99082361 - TM1040_2521 - short chain dehydrogenase 2521 57.99 0 2662400..2663344 - 314 99082362 - TM1040_2522 - K+-dependent Na+/Ca+ exchanger related-protein 2522 62.66 0 2663516..2664313 - 265 99082363 - TM1040_2523 - peptidase S49 2523 53.81 -2 2664552..2665313 - 253 99082364 - TM1040_2524 - ABC-2 type transporter 2524 57.42 0 2665310..2666239 - 309 99082365 - TM1040_2525 - ABC transporter related 2525 59.16 0 2666437..2666982 - 181 99082366 - TM1040_2526 - carbon monoxide dehydrogenase subunit G 2526 60.61 0 2667184..2668305 + 373 99082367 - TM1040_2527 - L-carnitine dehydratase/bile acid-inducible protein F 2527 60.98 0 2668364..2669401 - 345 99082368 - TM1040_2528 - uroporphyrinogen decarboxylase 2528 62.90 0 2669522..2670478 + 318 99082369 hemC TM1040_2529 - porphobilinogen deaminase 2529 59.95 0 2670697..2671575 - 292 99082370 - TM1040_2530 - glycoside hydrolase family protein 2530 59.91 0 2671697..2672599 - 300 99082371 - TM1040_2531 - coproporphyrinogen III oxidase 2531 59.95 0 2672639..2673442 - 267 99082372 - TM1040_2532 - short-chain dehydrogenase/reductase SDR 2532 59.88 0 2673606..2674592 - 328 99082373 - TM1040_2533 - methyltransferase small 2533 54.39 -1 2674632..2674973 - 113 99082374 - TM1040_2534 - ATP-dependent Clp protease adaptor protein ClpS 2534 58.82 0 2675064..2675777 + 237 99082375 - TM1040_2535 - haloacid dehalogenase-like hydrolase 2535 61.17 0 2676295..2677785 + 496 99082376 - TM1040_2536 - Serine-type D-Ala-D-Ala carboxypeptidase 2536 53.46 -2 2677985..2678143 - 52 99082377 - TM1040_2537 - cytochrome oxidase maturation protein, cbb3-type 2537 62.55 0 2678162..2680345 - 727 99082378 - TM1040_2538 - heavy metal translocating P-type ATPase 2538 61.22 0 2680424..2680900 - 158 99082379 - TM1040_2539 - FixH 2539 58.84 0 2680904..2682334 - 476 99082380 - TM1040_2540 - 4Fe-4S ferredoxin, iron-sulfur binding 2540 64.86 +1 2682482..2683366 - 294 99082381 - TM1040_2541 - LysR family transcriptional regulator 2541 59.77 0 2684043..2684927 - 294 99082382 - TM1040_2542 - cytochrome c oxidase, cbb3-type, subunit III 2542 58.59 0 2684924..2685121 - 65 99082383 - TM1040_2543 - Cbb3-type cytochrome oxidase component 2543 59.26 0 2685136..2685864 - 242 99082384 - TM1040_2544 - cytochrome c oxidase, cbb3-type, subunit II 2544 58.38 0 2685879..2687483 - 534 99082385 - TM1040_2545 - cytochrome c oxidase, cbb3-type, subunit I 2545 59.76 0 2687707..2688546 + 279 99082386 - TM1040_2546 - hypothetical protein 2546 58.43 0 2688724..2689464 - 246 99082387 - TM1040_2547 - Crp/FNR family transcriptional regulator 2547 59.66 0 2689525..2690880 + 451 99082388 - TM1040_2548 - coproporphyrinogen III oxidase 2548 59.26 0 2690971..2692563 - 530 99082389 - TM1040_2549 - ABC transporter related 2549 57.54 0 2692619..2693725 - 368 99082390 - TM1040_2550 - binding-protein-dependent transport systems inner membrane component 2550 55.92 -1 2693730..2694818 - 362 99082391 - TM1040_2551 - binding-protein-dependent transport systems inner membrane component 2551 59.00 0 2694826..2696676 - 616 99082392 - TM1040_2552 - extracellular solute-binding protein 2552 58.48 0 2697020..2697520 - 166 99082393 - TM1040_2553 - cytochrome c, class I 2553 60.77 0 2697641..2698471 + 276 99082394 - TM1040_2554 - prephenate dehydratase 2554 58.92 0 2698525..2700408 - 627 99082395 - TM1040_2555 - twin-arginine translocation pathway signal 2555 63.77 +1 2700556..2701281 - 241 99082396 recO TM1040_2556 - DNA repair protein RecO 2556 62.73 0 2701285..2701614 - 109 99082397 - TM1040_2557 - hypothetical protein 2557 61.15 0 2701779..2702684 - 301 99082398 era TM1040_2558 - GTP-binding protein Era 2558 61.73 0 2702681..2703409 - 242 99082399 - TM1040_2559 - RNAse III 2559 56.87 -1 2703577..2704413 - 278 99082400 - TM1040_2560 - signal peptidase I 2560 60.84 0 2704558..2704986 - 142 99082401 acpS TM1040_2561 - 4'-phosphopantetheinyl transferase 2561 59.15 0 2705013..2705438 - 141 99082402 - TM1040_2562 - hypothetical protein 2562 61.66 0 2705435..2706193 - 252 99082403 - TM1040_2563 - pyridoxal phosphate biosynthetic protein PdxJ 2563 61.28 0 2706314..2707018 - 234 99082404 - TM1040_2564 - hypothetical protein 2564 60.38 0 2707049..2709181 - 710 99082405 - TM1040_2565 - metal dependent phosphohydrolase 2565 60.45 0 2709220..2709573 - 117 99082406 - TM1040_2566 - DNA-directed RNA polymerase subunit omega 2566 55.09 -1 2709688..2710257 - 189 99082407 - TM1040_2567 - 2-amino-4-hydroxy-6-hydroxymethyldihydropteridine pyrophosphokinase 2567 55.96 -1 2710393..2710962 + 189 99082408 - TM1040_2568 - hypothetical protein 2568 63.30 0 2711132..2712082 + 316 99082409 - TM1040_2569 - 4-hydroxy-3-methylbut-2-enyl diphosphate reductase 2569 60.52 0 2712248..2712865 + 205 99082410 - TM1040_2570 - lysine exporter protein LysE/YggA 2570 64.27 +1 2712865..2713323 + 152 99082411 - TM1040_2571 - hypothetical protein 2571 61.17 0 2713320..2713919 + 199 99082412 - TM1040_2572 - methyltransferase type 11 2572 60.13 0 2713912..2714385 + 157 99082413 - TM1040_2573 - ribonuclease H 2573 63.14 0 2714499..2715122 + 207 99082414 - TM1040_2574 - hypothetical protein 2574 54.85 -1 2715176..2715412 - 78 99082415 - TM1040_2575 - hypothetical protein 2575 57.38 0 2715494..2715730 - 78 99082416 - TM1040_2576 - hypothetical protein 2576 65.80 +1 2715727..2716653 - 308 99082417 - TM1040_2577 - methionyl-tRNA formyltransferase 2577 61.65 0 2716810..2717307 - 165 99082418 - TM1040_2578 - formylmethionine deformylase 2578 60.20 0 2717304..2717813 - 169 99082419 - TM1040_2579 - peptide deformylase 2579 59.81 0 2717810..2718334 - 174 99082420 - TM1040_2580 - peptide deformylase 2580 59.76 0 2718493..2719665 + 390 99082421 - TM1040_2581 - aminotransferase, class I and II 2581 57.18 -1 2719778..2720146 - 122 99082422 - TM1040_2582 - hypothetical protein 2582 57.64 0 2720387..2721361 + 324 99082423 - TM1040_2583 - putative glutathione S-transferase 2583 65.46 +1 2721455..2722450 + 331 99082424 - TM1040_2584 - aminotransferase 2584 63.71 +1 2722447..2723358 + 303 99082425 - TM1040_2585 - adenosylcobinamide-phosphate synthase 2585 60.07 0 2723401..2724597 + 398 99082426 - TM1040_2586 - lytic murein transglycosylase 2586 64.41 +1 2724658..2728113 - 1151 99082427 - TM1040_2587 - chromosome segregation protein SMC 2587 61.07 0 2728243..2729457 - 404 99082428 - TM1040_2588 - aminotransferase, class I and II 2588 58.98 0 2729612..2730379 + 255 99082429 - TM1040_2589 - GntR family transcriptional regulator 2589 60.83 0 2730376..2731197 - 273 99082430 - TM1040_2590 - ABC transporter related 2590 61.11 0 2731437..2731994 - 185 99082431 - TM1040_2591 - F0F1 ATP synthase subunit B 2591 60.81 0 2731997..2732542 - 181 99082432 - TM1040_2592 - F0F1 ATP synthase subunit B' 2592 60.00 0 2732629..2732853 - 74 99082433 - TM1040_2593 - F0F1 ATP synthase subunit C 2593 57.34 0 2732910..2733713 - 267 99082434 - TM1040_2594 - F0F1 ATP synthase subunit A 2594 58.77 0 2733753..2734094 - 113 99082435 - TM1040_2595 - ATP synthase F0, subunit I 2595 64.19 +1 2734304..2735191 - 295 99082436 - TM1040_2596 - hypothetical protein 2596 59.39 0 2735291..2735620 + 109 99082437 - TM1040_2597 - ArsR family transcriptional regulator 2597 62.39 0 2735663..2736574 - 303 99082438 - TM1040_2598 - hypothetical protein 2598 62.00 0 2736583..2737461 - 292 99082439 - TM1040_2599 - LysR family transcriptional regulator 2599 60.82 0 2737602..2738183 + 193 99082440 - TM1040_2600 - (Acyl-carrier protein) phosphodiesterase 2600 60.45 0 2738369..2738899 - 176 99082441 - TM1040_2601 - Ala-tRNA(Pro) hydrolase 2601 62.34 0 2738987..2739772 - 261 99082442 - TM1040_2602 - hypothetical protein 2602 62.27 0 2740131..2741675 + 514 99082443 - TM1040_2603 - signal recognition particle subunit FFH/SRP54 (srp54) 2603 62.52 0 2741685..2742215 + 176 99082444 - TM1040_2604 - GCN5-related N-acetyltransferase 2604 62.38 0 2742212..2742817 + 201 99082445 - TM1040_2605 - hypothetical protein 2605 59.87 0 2742810..2743118 + 102 99082446 - TM1040_2606 - chorismate mutase 2606 60.66 0 2743178..2743543 + 121 99082447 rpsP TM1040_2607 - 30S ribosomal protein S16 2607 66.21 +1 2743548..2744201 + 217 99082448 - TM1040_2608 - Cob(II)yrinic acid a,c-diamide reductase 2608 64.15 +1 2744391..2744906 + 171 99082449 - TM1040_2609 - 16S rRNA processing protein RimM 2609 60.73 0 2744907..2745917 - 336 99082450 - TM1040_2610 - hypothetical protein 2610 62.55 0 2745980..2746780 + 266 99082451 - TM1040_2611 - tRNA (Guanine37-N(1)-) methyltransferase 60.41 MEAN 3.16 STD DEV
Last Updated: Dec 04, 2008
Funding for this work was provided by the Peter Wall Institute for Advanced Studies. This service is hosted by the Brinkman Laboratory of the Department of Molecular Biology and Biochemistry at Simon Fraser University.
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