version 1.0
Silicibacter sp. TM1040, complete genome - 1..3200938 3030 proteins Pos %G+C SD Location Strand Length PID Gene Synonym Code Product 2453 59.10 0 2596656..2597144 - 162 99082294 - TM1040_2454 - MarR family transcriptional regulator 2454 62.88 0 2597317..2598135 + 272 99082295 - TM1040_2455 - hypothetical protein 2455 58.99 0 2598178..2598633 - 151 99082296 - TM1040_2456 - hypothetical protein 2456 55.42 -1 2598701..2599207 - 168 99082297 - TM1040_2457 - NUDIX hydrolase 2457 61.49 0 2599378..2601405 + 675 99082298 - TM1040_2458 - 2,4-dienoyl-CoA reductase 2458 62.71 0 2601478..2602539 - 353 99082299 - TM1040_2459 - 2-nitropropane dioxygenase, NPD 2459 58.50 0 2602719..2603624 - 301 99082300 - TM1040_2460 - LysR family transcriptional regulator 2460 57.66 0 2603833..2604165 + 110 99082301 - TM1040_2461 - NIPSNAP domain-containing protein 2461 60.50 0 2604162..2604518 + 118 99082302 - TM1040_2462 - antibiotic biosynthesis monooxygenase 2462 56.29 -1 2604785..2605372 + 195 99082303 - TM1040_2463 - lysine exporter protein LysE/YggA 2463 62.98 0 2605380..2606438 - 352 99082304 - TM1040_2464 - OmpA/MotB 2464 54.97 -1 2606459..2607031 - 190 99082305 - TM1040_2465 - hypothetical protein 2465 60.61 0 2607061..2607786 - 241 99082306 - TM1040_2466 - GCN5-related N-acetyltransferase 2466 60.44 0 2607783..2608505 - 240 99082307 - TM1040_2467 - molybdopterin binding domain-containing protein 2467 59.97 0 2608608..2609324 + 238 99082308 - TM1040_2468 - sugar fermentation stimulation protein 2468 59.56 0 2609508..2610323 + 271 99082309 - TM1040_2469 - methionine aminopeptidase, type I 2469 64.34 +1 2610478..2611035 - 185 99082310 - TM1040_2470 - hypothetical protein 2470 58.83 0 2611032..2612243 - 403 99082311 - TM1040_2471 - FAD-dependent pyridine nucleotide-disulphide oxidoreductase 2471 58.23 0 2612366..2612851 + 161 99082312 - TM1040_2472 - thiol peroxidase (atypical 2-Cys peroxiredoxin) 2472 59.54 0 2612901..2613770 + 289 99082313 - TM1040_2473 - hypothetical protein 2473 52.86 -2 2613915..2614211 - 98 99082314 - TM1040_2474 - pterin-4-alpha-carbinolamine dehydratase 2474 60.02 0 2614208..2615395 - 395 99082315 - TM1040_2475 - hypothetical protein 2475 63.06 0 2615443..2616219 - 258 99082316 - TM1040_2476 - glycerophosphoryl diester phosphodiesterase 2476 60.61 0 2616228..2616689 - 153 99082317 - TM1040_2477 - endoribonuclease L-PSP 2477 61.15 0 2616801..2618123 - 440 99082318 - TM1040_2478 - Type I secretion membrane fusion protein, HlyD 2478 61.22 0 2618120..2619883 - 587 99082319 - TM1040_2479 - Type I secretion system ATPase, PrtD 2479 57.68 0 2620035..2620835 + 266 99082320 - TM1040_2480 - VacJ-like lipoprotein 2480 56.85 -1 2620839..2621429 + 196 99082321 - TM1040_2481 - toluene tolerance 2481 56.60 -1 2621561..2622037 - 158 99082322 smpB TM1040_2482 - SsrA-binding protein 2482 62.17 0 2622133..2622999 - 288 99082323 - TM1040_2483 - hypothetical protein 2483 60.99 0 2623072..2623635 - 187 99082324 - TM1040_2484 - XRE family transcriptional regulator 2484 61.66 0 2623777..2624955 + 392 99082325 - TM1040_2485 - benzoate transporter 2485 60.98 0 2625094..2626938 + 614 99082326 - TM1040_2486 - dihydroxy-acid dehydratase 2486 55.31 -1 2627160..2627978 - 272 99082327 - TM1040_2487 - hypothetical protein 2487 57.29 0 2628115..2629692 + 525 99082328 - TM1040_2488 - glycosyl transferase family protein 2488 54.97 -1 2629773..2630507 - 244 99082329 - TM1040_2489 - hypothetical protein 2489 55.09 -1 2630666..2631304 - 212 99082330 - TM1040_2490 - hypothetical protein 2490 58.40 0 2631472..2632680 - 402 99082331 - TM1040_2491 - creatinase 2491 59.29 0 2632860..2633645 - 261 99082332 - TM1040_2492 - putative esterase/lipase/thioesterase 2492 58.72 0 2633749..2635221 + 490 99082333 - TM1040_2493 - succinate semialdehyde dehydrogenase 2493 53.70 -2 2635245..2635676 - 143 99082334 - TM1040_2494 - globin 2494 59.02 0 2635844..2638015 + 723 99082335 - TM1040_2495 - hypothetical protein 2495 59.96 0 2638410..2639303 + 297 99082336 - TM1040_2496 - hypothetical protein 2496 60.40 0 2639283..2639888 - 201 99082337 - TM1040_2497 - TetR family transcriptional regulator 2497 59.19 0 2640025..2640492 - 155 99082338 - TM1040_2498 - heat shock protein Hsp20 2498 61.75 0 2640633..2641487 - 284 99082339 - TM1040_2499 - peptidase S1 and S6, chymotrypsin/Hap 2499 60.00 0 2641580..2642899 - 439 99082340 - TM1040_2500 - protein of unknown function DUF224, cysteine-rich region 2500 63.74 +1 2642904..2643995 - 363 99082341 - TM1040_2501 - FAD linked oxidase-like 2501 58.87 0 2644053..2645501 - 482 99082342 - TM1040_2502 - D-lactate dehydrogenase (cytochrome) 2502 58.51 0 2645583..2646305 + 240 99082343 - TM1040_2503 - hypothetical protein 2503 60.00 0 2646341..2646700 + 119 99082344 - TM1040_2504 - hypothetical protein 2504 61.57 0 2646706..2647176 - 156 99082345 - TM1040_2505 - hypothetical protein 2505 57.78 0 2647306..2647665 - 119 99082346 - TM1040_2506 - Iojap-related protein 2506 58.47 0 2647796..2649223 - 475 99082347 - TM1040_2507 - MscS mechanosensitive ion channel 2507 62.89 0 2649508..2650911 + 467 99082348 - TM1040_2508 - isopropylmalate isomerase large subunit 2508 55.78 -1 2650924..2651529 + 201 99082349 leuD TM1040_2509 - isopropylmalate isomerase small subunit 2509 52.67 -2 2651628..2651927 - 99 99082350 - TM1040_2510 - hypothetical protein 2510 61.36 0 2651928..2653001 - 357 99082351 - TM1040_2511 - phenylalanyl-tRNA synthetase, alpha subunit 2511 61.59 0 2653223..2654206 + 327 99082352 - TM1040_2512 - putative adenylate/guanylate cyclase 2512 60.11 0 2654320..2654685 - 121 99082353 rplT TM1040_2513 - 50S ribosomal protein L20 2513 55.72 -1 2654701..2654901 - 66 99082354 rpmI TM1040_2514 - 50S ribosomal protein L35 2514 58.56 0 2655018..2655239 - 73 99082355 - TM1040_2515 - hypothetical protein 2515 60.17 0 2655276..2656721 - 481 99082356 - TM1040_2516 - pyruvate kinase 2516 63.38 0 2657069..2658073 - 334 99082357 - TM1040_2517 - zinc-binding alcohol dehydrogenase 2517 60.06 0 2658190..2658900 - 236 99082358 - TM1040_2518 - RpsU-divergently transcribed 2518 57.00 -1 2659018..2659224 + 68 99082359 rpsU TM1040_2519 - 30S ribosomal protein S21 2519 58.60 0 2659370..2661277 - 635 99082360 uvrC TM1040_2520 - excinuclease ABC subunit C 2520 63.32 0 2661587..2662363 - 258 99082361 - TM1040_2521 - short chain dehydrogenase 2521 57.99 0 2662400..2663344 - 314 99082362 - TM1040_2522 - K+-dependent Na+/Ca+ exchanger related-protein 2522 62.66 0 2663516..2664313 - 265 99082363 - TM1040_2523 - peptidase S49 2523 53.81 -2 2664552..2665313 - 253 99082364 - TM1040_2524 - ABC-2 type transporter 2524 57.42 0 2665310..2666239 - 309 99082365 - TM1040_2525 - ABC transporter related 2525 59.16 0 2666437..2666982 - 181 99082366 - TM1040_2526 - carbon monoxide dehydrogenase subunit G 2526 60.61 0 2667184..2668305 + 373 99082367 - TM1040_2527 - L-carnitine dehydratase/bile acid-inducible protein F 2527 60.98 0 2668364..2669401 - 345 99082368 - TM1040_2528 - uroporphyrinogen decarboxylase 2528 62.90 0 2669522..2670478 + 318 99082369 hemC TM1040_2529 - porphobilinogen deaminase 2529 59.95 0 2670697..2671575 - 292 99082370 - TM1040_2530 - glycoside hydrolase family protein 2530 59.91 0 2671697..2672599 - 300 99082371 - TM1040_2531 - coproporphyrinogen III oxidase 2531 59.95 0 2672639..2673442 - 267 99082372 - TM1040_2532 - short-chain dehydrogenase/reductase SDR 2532 59.88 0 2673606..2674592 - 328 99082373 - TM1040_2533 - methyltransferase small 2533 54.39 -1 2674632..2674973 - 113 99082374 - TM1040_2534 - ATP-dependent Clp protease adaptor protein ClpS 2534 58.82 0 2675064..2675777 + 237 99082375 - TM1040_2535 - haloacid dehalogenase-like hydrolase 2535 61.17 0 2676295..2677785 + 496 99082376 - TM1040_2536 - Serine-type D-Ala-D-Ala carboxypeptidase 2536 53.46 -2 2677985..2678143 - 52 99082377 - TM1040_2537 - cytochrome oxidase maturation protein, cbb3-type 2537 62.55 0 2678162..2680345 - 727 99082378 - TM1040_2538 - heavy metal translocating P-type ATPase 2538 61.22 0 2680424..2680900 - 158 99082379 - TM1040_2539 - FixH 2539 58.84 0 2680904..2682334 - 476 99082380 - TM1040_2540 - 4Fe-4S ferredoxin, iron-sulfur binding 2540 64.86 +1 2682482..2683366 - 294 99082381 - TM1040_2541 - LysR family transcriptional regulator 2541 59.77 0 2684043..2684927 - 294 99082382 - TM1040_2542 - cytochrome c oxidase, cbb3-type, subunit III 2542 58.59 0 2684924..2685121 - 65 99082383 - TM1040_2543 - Cbb3-type cytochrome oxidase component 2543 59.26 0 2685136..2685864 - 242 99082384 - TM1040_2544 - cytochrome c oxidase, cbb3-type, subunit II 2544 58.38 0 2685879..2687483 - 534 99082385 - TM1040_2545 - cytochrome c oxidase, cbb3-type, subunit I 2545 59.76 0 2687707..2688546 + 279 99082386 - TM1040_2546 - hypothetical protein 2546 58.43 0 2688724..2689464 - 246 99082387 - TM1040_2547 - Crp/FNR family transcriptional regulator 2547 59.66 0 2689525..2690880 + 451 99082388 - TM1040_2548 - coproporphyrinogen III oxidase 2548 59.26 0 2690971..2692563 - 530 99082389 - TM1040_2549 - ABC transporter related 2549 57.54 0 2692619..2693725 - 368 99082390 - TM1040_2550 - binding-protein-dependent transport systems inner membrane component 2550 55.92 -1 2693730..2694818 - 362 99082391 - TM1040_2551 - binding-protein-dependent transport systems inner membrane component 2551 59.00 0 2694826..2696676 - 616 99082392 - TM1040_2552 - extracellular solute-binding protein 2552 58.48 0 2697020..2697520 - 166 99082393 - TM1040_2553 - cytochrome c, class I 60.41 MEAN 3.16 STD DEV
Last Updated: Dec 04, 2008
Funding for this work was provided by the Peter Wall Institute for Advanced Studies. This service is hosted by the Brinkman Laboratory of the Department of Molecular Biology and Biochemistry at Simon Fraser University.
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