version 1.0
Silicibacter sp. TM1040, complete genome - 1..3200938 3030 proteins Pos %G+C SD Location Strand Length PID Gene Synonym Code Product 2411 57.71 0 2551834..2552994 - 386 99082252 - TM1040_2412 - AraC family transcriptional regulator 2412 61.96 0 2553324..2554130 + 268 99082253 - TM1040_2413 - 2-dehydro-3-deoxygalactonokinase, putative 2413 60.92 0 2554164..2554964 - 266 99082254 - TM1040_2414 - hypothetical protein 2414 61.68 0 2555077..2556198 - 373 99082255 - TM1040_2415 - putative RNA methylase 2415 60.03 0 2556474..2558207 + 577 99082256 - TM1040_2416 - extracellular solute-binding protein 2416 61.19 0 2558405..2559481 + 358 99082257 - TM1040_2417 - ABC transporter related 2417 59.12 0 2559491..2560564 + 357 99082258 - TM1040_2418 - ABC transporter related 2418 56.94 -1 2560570..2561433 + 287 99082259 - TM1040_2419 - binding-protein-dependent transport systems inner membrane component 2419 57.64 0 2561445..2562242 + 265 99082260 - TM1040_2420 - binding-protein-dependent transport systems inner membrane component 2420 60.57 0 2562244..2562522 + 92 99082261 - TM1040_2421 - hypothetical protein 2421 54.67 -1 2562766..2563215 + 149 99082262 - TM1040_2422 - CopY family transcriptional regulator 2422 60.54 0 2563205..2564347 + 380 99082263 - TM1040_2423 - peptidase M56, BlaR1 2423 56.96 -1 2564427..2565302 - 291 99082264 - TM1040_2424 - 3-hydroxybutyryl-CoA dehydrogenase 2424 56.15 -1 2565459..2566295 + 278 99082265 - TM1040_2425 - hypothetical protein 2425 61.29 0 2566366..2567295 - 309 99082266 - TM1040_2426 - electron transfer flavoprotein, alpha subunit 2426 59.82 0 2567295..2568053 - 252 99082267 - TM1040_2427 - electron transfer flavoprotein beta-subunit 2427 61.61 0 2568362..2568934 - 190 99082268 - TM1040_2428 - ATP:cob(I)alamin adenosyltransferase 2428 54.41 -1 2568936..2569139 - 67 99082269 - TM1040_2429 - hypothetical protein 2429 60.05 0 2569211..2570041 - 276 99082270 - TM1040_2430 - short-chain dehydrogenase/reductase SDR 2430 62.72 0 2570072..2570755 - 227 99082271 - TM1040_2431 - SH3, type 3 2431 59.94 0 2571061..2573409 + 782 99082272 - TM1040_2432 - DNA topoisomerase IV subunit A 2432 58.80 0 2573544..2574128 + 194 99082273 - TM1040_2433 - hypothetical protein 2433 59.10 0 2574242..2575417 + 391 99082274 - TM1040_2434 - elongation factor Tu 2434 58.49 0 2576659..2577612 - 317 99082275 - TM1040_2435 - hypothetical protein 2435 54.44 -1 2577596..2577865 - 89 99082276 - TM1040_2436 - phosphotransferase system, HPr 2436 58.52 0 2577869..2578273 - 134 99082277 - TM1040_2437 - PTS system fructose subfamily IIA component 2437 59.47 0 2578283..2579185 - 300 99082278 - TM1040_2438 - hypothetical protein 2438 60.12 0 2579157..2579645 - 162 99082279 - TM1040_2439 - Hpr(Ser) kinase/phosphatase 2439 59.05 0 2579623..2581356 - 577 99082280 - TM1040_2440 - periplasmic sensor signal transduction histidine kinase 2440 57.12 -1 2581396..2582097 - 233 99082281 - TM1040_2441 - two component transcriptional regulator 2441 59.66 0 2582496..2584094 + 532 99082282 - TM1040_2442 - phosphoenolpyruvate carboxykinase 2442 61.09 0 2584215..2584895 - 226 99082283 - TM1040_2443 - lipolytic enzyme, G-D-S-L 2443 60.56 0 2584992..2586695 - 567 99082284 - TM1040_2444 - isovaleryl-CoA dehydrogenase 2444 58.98 0 2586837..2587604 + 255 99082285 - TM1040_2445 - hypothetical protein 2445 59.23 0 2587609..2588523 + 304 99082286 - TM1040_2446 - cation diffusion facilitator family transporter 2446 63.37 0 2588565..2589110 - 181 99082287 - TM1040_2447 - NADPH-dependent FMN reductase 2447 61.26 0 2589284..2589949 - 221 99082288 - TM1040_2448 - OmpA/MotB 2448 61.01 0 2590138..2590827 - 229 99082289 - TM1040_2449 - helix-turn-helix, type 11 2449 63.97 +1 2591174..2592025 - 283 99082290 - TM1040_2450 - AraC family transcriptional regulator 2450 56.85 -1 2592128..2592871 + 247 99082291 - TM1040_2451 - DNA-(apurinic or apyrimidinic site) lyase / endonuclease III 2451 59.92 0 2592868..2593860 + 330 99082292 - TM1040_2452 - PfkB 2452 58.01 0 2594208..2596574 + 788 99082293 - TM1040_2453 - methyl-accepting chemotaxis sensory transducer 2453 59.10 0 2596656..2597144 - 162 99082294 - TM1040_2454 - MarR family transcriptional regulator 2454 62.88 0 2597317..2598135 + 272 99082295 - TM1040_2455 - hypothetical protein 2455 58.99 0 2598178..2598633 - 151 99082296 - TM1040_2456 - hypothetical protein 2456 55.42 -1 2598701..2599207 - 168 99082297 - TM1040_2457 - NUDIX hydrolase 2457 61.49 0 2599378..2601405 + 675 99082298 - TM1040_2458 - 2,4-dienoyl-CoA reductase 2458 62.71 0 2601478..2602539 - 353 99082299 - TM1040_2459 - 2-nitropropane dioxygenase, NPD 2459 58.50 0 2602719..2603624 - 301 99082300 - TM1040_2460 - LysR family transcriptional regulator 2460 57.66 0 2603833..2604165 + 110 99082301 - TM1040_2461 - NIPSNAP domain-containing protein 2461 60.50 0 2604162..2604518 + 118 99082302 - TM1040_2462 - antibiotic biosynthesis monooxygenase 2462 56.29 -1 2604785..2605372 + 195 99082303 - TM1040_2463 - lysine exporter protein LysE/YggA 2463 62.98 0 2605380..2606438 - 352 99082304 - TM1040_2464 - OmpA/MotB 2464 54.97 -1 2606459..2607031 - 190 99082305 - TM1040_2465 - hypothetical protein 2465 60.61 0 2607061..2607786 - 241 99082306 - TM1040_2466 - GCN5-related N-acetyltransferase 2466 60.44 0 2607783..2608505 - 240 99082307 - TM1040_2467 - molybdopterin binding domain-containing protein 2467 59.97 0 2608608..2609324 + 238 99082308 - TM1040_2468 - sugar fermentation stimulation protein 2468 59.56 0 2609508..2610323 + 271 99082309 - TM1040_2469 - methionine aminopeptidase, type I 2469 64.34 +1 2610478..2611035 - 185 99082310 - TM1040_2470 - hypothetical protein 2470 58.83 0 2611032..2612243 - 403 99082311 - TM1040_2471 - FAD-dependent pyridine nucleotide-disulphide oxidoreductase 2471 58.23 0 2612366..2612851 + 161 99082312 - TM1040_2472 - thiol peroxidase (atypical 2-Cys peroxiredoxin) 2472 59.54 0 2612901..2613770 + 289 99082313 - TM1040_2473 - hypothetical protein 2473 52.86 -2 2613915..2614211 - 98 99082314 - TM1040_2474 - pterin-4-alpha-carbinolamine dehydratase 2474 60.02 0 2614208..2615395 - 395 99082315 - TM1040_2475 - hypothetical protein 2475 63.06 0 2615443..2616219 - 258 99082316 - TM1040_2476 - glycerophosphoryl diester phosphodiesterase 2476 60.61 0 2616228..2616689 - 153 99082317 - TM1040_2477 - endoribonuclease L-PSP 2477 61.15 0 2616801..2618123 - 440 99082318 - TM1040_2478 - Type I secretion membrane fusion protein, HlyD 2478 61.22 0 2618120..2619883 - 587 99082319 - TM1040_2479 - Type I secretion system ATPase, PrtD 2479 57.68 0 2620035..2620835 + 266 99082320 - TM1040_2480 - VacJ-like lipoprotein 2480 56.85 -1 2620839..2621429 + 196 99082321 - TM1040_2481 - toluene tolerance 2481 56.60 -1 2621561..2622037 - 158 99082322 smpB TM1040_2482 - SsrA-binding protein 2482 62.17 0 2622133..2622999 - 288 99082323 - TM1040_2483 - hypothetical protein 2483 60.99 0 2623072..2623635 - 187 99082324 - TM1040_2484 - XRE family transcriptional regulator 2484 61.66 0 2623777..2624955 + 392 99082325 - TM1040_2485 - benzoate transporter 2485 60.98 0 2625094..2626938 + 614 99082326 - TM1040_2486 - dihydroxy-acid dehydratase 2486 55.31 -1 2627160..2627978 - 272 99082327 - TM1040_2487 - hypothetical protein 2487 57.29 0 2628115..2629692 + 525 99082328 - TM1040_2488 - glycosyl transferase family protein 2488 54.97 -1 2629773..2630507 - 244 99082329 - TM1040_2489 - hypothetical protein 2489 55.09 -1 2630666..2631304 - 212 99082330 - TM1040_2490 - hypothetical protein 2490 58.40 0 2631472..2632680 - 402 99082331 - TM1040_2491 - creatinase 2491 59.29 0 2632860..2633645 - 261 99082332 - TM1040_2492 - putative esterase/lipase/thioesterase 2492 58.72 0 2633749..2635221 + 490 99082333 - TM1040_2493 - succinate semialdehyde dehydrogenase 2493 53.70 -2 2635245..2635676 - 143 99082334 - TM1040_2494 - globin 2494 59.02 0 2635844..2638015 + 723 99082335 - TM1040_2495 - hypothetical protein 2495 59.96 0 2638410..2639303 + 297 99082336 - TM1040_2496 - hypothetical protein 2496 60.40 0 2639283..2639888 - 201 99082337 - TM1040_2497 - TetR family transcriptional regulator 2497 59.19 0 2640025..2640492 - 155 99082338 - TM1040_2498 - heat shock protein Hsp20 2498 61.75 0 2640633..2641487 - 284 99082339 - TM1040_2499 - peptidase S1 and S6, chymotrypsin/Hap 2499 60.00 0 2641580..2642899 - 439 99082340 - TM1040_2500 - protein of unknown function DUF224, cysteine-rich region 2500 63.74 +1 2642904..2643995 - 363 99082341 - TM1040_2501 - FAD linked oxidase-like 2501 58.87 0 2644053..2645501 - 482 99082342 - TM1040_2502 - D-lactate dehydrogenase (cytochrome) 2502 58.51 0 2645583..2646305 + 240 99082343 - TM1040_2503 - hypothetical protein 2503 60.00 0 2646341..2646700 + 119 99082344 - TM1040_2504 - hypothetical protein 2504 61.57 0 2646706..2647176 - 156 99082345 - TM1040_2505 - hypothetical protein 2505 57.78 0 2647306..2647665 - 119 99082346 - TM1040_2506 - Iojap-related protein 2506 58.47 0 2647796..2649223 - 475 99082347 - TM1040_2507 - MscS mechanosensitive ion channel 2507 62.89 0 2649508..2650911 + 467 99082348 - TM1040_2508 - isopropylmalate isomerase large subunit 2508 55.78 -1 2650924..2651529 + 201 99082349 leuD TM1040_2509 - isopropylmalate isomerase small subunit 2509 52.67 -2 2651628..2651927 - 99 99082350 - TM1040_2510 - hypothetical protein 2510 61.36 0 2651928..2653001 - 357 99082351 - TM1040_2511 - phenylalanyl-tRNA synthetase, alpha subunit 60.41 MEAN 3.16 STD DEV
Last Updated: Dec 04, 2008
Funding for this work was provided by the Peter Wall Institute for Advanced Studies. This service is hosted by the Brinkman Laboratory of the Department of Molecular Biology and Biochemistry at Simon Fraser University.
version
1.0