version 1.0
Silicibacter sp. TM1040, complete genome - 1..3200938 3030 proteins Pos %G+C SD Location Strand Length PID Gene Synonym Code Product 2336 65.33 +1 2456281..2457702 + 473 99082177 - TM1040_2337 - microcin-processing peptidase 2 2337 62.49 0 2458080..2459228 + 382 99082178 - TM1040_2338 - DNA processing protein DprA, putative 2338 60.70 0 2459369..2462050 + 893 99082179 - TM1040_2339 - DNA topoisomerase I 2339 59.29 0 2462335..2463039 + 234 99082180 - TM1040_2340 - 3-oxoacid CoA-transferase, subunit A 2340 59.97 0 2463043..2463669 + 208 99082181 - TM1040_2341 - butyryl-CoA:acetate CoA transferase 2341 61.17 0 2463866..2464684 - 272 99082182 - TM1040_2342 - lytic transglycosylase, catalytic 2342 56.99 -1 2465040..2465225 + 61 99082183 - TM1040_2343 - hypothetical protein 2343 59.49 0 2465332..2465526 + 64 99082184 - TM1040_2344 - hypothetical protein 2344 62.96 0 2465660..2466523 + 287 99082185 - TM1040_2345 - Flp pilus assembly CpaB 2345 59.37 0 2466653..2468146 + 497 99082186 - TM1040_2346 - type II and III secretion system protein 2346 61.70 0 2468168..2468791 + 207 99082187 - TM1040_2347 - OmpA/MotB 2347 58.55 0 2469041..2470285 + 414 99082188 - TM1040_2348 - response regulator receiver protein 2348 58.78 0 2470318..2471775 + 485 99082189 - TM1040_2349 - type II secretion system protein E 2349 58.41 0 2471775..2472743 + 322 99082190 - TM1040_2350 - type II secretion system protein 2350 57.92 0 2472754..2473725 + 323 99082191 - TM1040_2351 - type II secretion system protein 2351 62.05 0 2473735..2474340 + 201 99082192 - TM1040_2352 - tetratricopeptide TPR_2 2352 61.15 0 2474374..2475225 + 283 99082193 - TM1040_2353 - tetratricopeptide region 2353 60.44 0 2475241..2475738 + 165 99082194 - TM1040_2354 - hypothetical protein 2354 59.40 0 2475902..2477209 + 435 99082195 - TM1040_2355 - hypothetical protein 2355 60.80 0 2477322..2478224 - 300 99082196 - TM1040_2356 - methenyltetrahydrofolate cyclohydrolase 2356 58.82 0 2478269..2478574 - 101 99082197 - TM1040_2357 - chorismate mutase 2357 61.06 0 2478640..2480316 - 558 99082198 - TM1040_2358 - formate--tetrahydrofolate ligase 2358 62.20 0 2480493..2481074 - 193 99082199 - TM1040_2359 - MOSC domain-containing protein 2359 60.17 0 2481123..2481845 - 240 99082200 - TM1040_2360 - hypothetical protein 2360 59.20 0 2482013..2483926 - 637 99082201 - TM1040_2361 - ATP-dependent metalloprotease FtsH 2361 63.34 0 2484016..2485308 - 430 99082202 - TM1040_2362 - tRNA(Ile)-lysidine synthetase-like 2362 63.73 +1 2485299..2486150 - 283 99082203 - TM1040_2363 - tetratricopeptide TPR_2 2363 63.89 +1 2486156..2486659 - 167 99082204 - TM1040_2364 - OmpA/MotB 2364 61.09 0 2486763..2488088 - 441 99082205 tolB TM1040_2365 - translocation protein TolB 2365 64.84 +1 2488085..2489236 - 383 99082206 - TM1040_2366 - TonB domain-containing protein 2366 64.62 +1 2489250..2489738 - 162 99082207 - TM1040_2367 - biopolymer transport protein ExbD/TolR 2367 58.62 0 2489742..2490437 - 231 99082208 - TM1040_2368 - MotA/TolQ/ExbB proton channel 2368 58.14 0 2490552..2490938 - 128 99082209 - TM1040_2369 - 4-hydroxybenzoyl-CoA thioesterase 2369 60.66 0 2490935..2491600 - 221 99082210 - TM1040_2370 - hypothetical protein 2370 63.63 +1 2491837..2492856 - 339 99082211 ruvB TM1040_2371 - Holliday junction DNA helicase B 2371 63.62 +1 2492868..2493557 - 229 99082212 ruvA TM1040_2372 - Holliday junction DNA helicase motor protein 2372 58.02 0 2493554..2494120 - 188 99082213 ruvC TM1040_2373 - Holliday junction resolvase 2373 61.64 0 2494425..2494643 + 72 99082214 - TM1040_2374 - hypothetical protein 2374 57.85 0 2494796..2495056 - 86 99082215 - TM1040_2375 - hypothetical protein 2375 59.43 0 2495256..2496125 - 289 99082216 - TM1040_2376 - 50S ribosomal protein L11P methyltransferase 2376 58.66 0 2496237..2497472 - 411 99082217 - TM1040_2377 - major facilitator transporter 2377 63.18 0 2497575..2499782 - 735 99082218 - TM1040_2378 - primosome assembly protein PriA 2378 57.80 0 2499963..2500616 + 217 99082219 - TM1040_2379 - putative translaldolase 2379 60.92 0 2500799..2501512 + 237 99082220 - TM1040_2380 - hypothetical protein 2380 65.38 +1 2501509..2502444 + 311 99082221 xerC TM1040_2381 - site-specific tyrosine recombinase XerC 2381 56.85 -1 2502569..2503261 + 230 99082222 - TM1040_2382 - CDP-diacylglycerol-choline O-phosphatidyltransferase 2382 62.42 0 2503459..2503764 + 101 99082223 - TM1040_2383 - hypothetical protein 2383 60.51 0 2503881..2504660 - 259 99082224 truA TM1040_2384 - tRNA pseudouridine synthase A 2384 64.81 +1 2504863..2506260 + 465 99082225 - TM1040_2385 - protein of unknown function DUF463, YcjX-like protein 2385 60.00 0 2506257..2506721 + 154 99082226 - TM1040_2386 - GCN5-related N-acetyltransferase 2386 64.32 +1 2506718..2507698 + 326 99082227 - TM1040_2387 - hypothetical protein 2387 59.18 0 2507721..2508134 - 137 99082228 - TM1040_2388 - hypothetical protein 2388 59.73 0 2508425..2511349 + 974 99082229 ileS TM1040_2389 - isoleucyl-tRNA synthetase 2389 60.00 0 2511432..2511881 - 149 99082230 - TM1040_2390 - hypothetical protein 2390 60.49 0 2512654..2515503 - 949 99082231 - TM1040_2391 - glycine dehydrogenase 2391 56.94 -1 2515630..2515989 - 119 99082232 - TM1040_2392 - glycine cleavage system H protein 2392 62.31 0 2516031..2517155 - 374 99082233 - TM1040_2393 - glycine cleavage system T protein 2393 62.12 0 2517618..2518607 + 329 99082234 - TM1040_2394 - glyceraldehyde 3-phosphate dehydrogenase (phosphorylating) 2394 62.19 0 2518778..2520610 + 610 99082235 - TM1040_2395 - surface antigen (D15) 2395 63.07 0 2520607..2524614 + 1335 99082236 - TM1040_2396 - hypothetical protein 2396 63.56 0 2524618..2525616 + 332 99082237 - TM1040_2397 - glycosyl transferase family protein 2397 60.17 0 2525684..2526406 - 240 99082238 - TM1040_2398 - WecB/TagA/CpsF family glycosyl transferase 2398 55.56 -1 2526578..2528044 + 488 99082239 - TM1040_2399 - hypothetical protein 2399 61.94 0 2528233..2534685 + 2150 99082240 - TM1040_2400 - beta-ketoacyl synthase 2400 60.02 0 2534689..2535711 + 340 99082241 - TM1040_2401 - glycosyl transferase family protein 2401 61.34 0 2535708..2540267 + 1519 99082242 - TM1040_2402 - amino acid adenylation 2402 60.90 0 2540264..2540974 + 236 99082243 - TM1040_2403 - 4'-phosphopantetheinyl transferase 2403 62.22 0 2540971..2541936 + 321 99082244 - TM1040_2404 - hypothetical protein 2404 61.07 0 2541933..2544470 + 845 99082245 - TM1040_2405 - hypothetical protein 2405 60.85 0 2544467..2545309 + 280 99082246 - TM1040_2406 - glycosyl transferase family protein 2406 62.06 0 2545320..2546534 - 404 99082247 - TM1040_2407 - glycosyl transferase, group 1 2407 60.03 0 2546676..2548091 + 471 99082248 - TM1040_2408 - polysaccharide biosynthesis protein 2408 61.18 0 2548100..2549374 - 424 99082249 - TM1040_2409 - lipopolysaccharide biosynthesis 2409 63.27 0 2549408..2550409 - 333 99082250 - TM1040_2410 - exopolysaccharide biosynthesis domain-containing protein 2410 58.96 0 2550750..2551463 - 237 99082251 - TM1040_2411 - undecaprenyl-phosphate galactosephosphotransferase 2411 57.71 0 2551834..2552994 - 386 99082252 - TM1040_2412 - AraC family transcriptional regulator 2412 61.96 0 2553324..2554130 + 268 99082253 - TM1040_2413 - 2-dehydro-3-deoxygalactonokinase, putative 2413 60.92 0 2554164..2554964 - 266 99082254 - TM1040_2414 - hypothetical protein 2414 61.68 0 2555077..2556198 - 373 99082255 - TM1040_2415 - putative RNA methylase 2415 60.03 0 2556474..2558207 + 577 99082256 - TM1040_2416 - extracellular solute-binding protein 2416 61.19 0 2558405..2559481 + 358 99082257 - TM1040_2417 - ABC transporter related 2417 59.12 0 2559491..2560564 + 357 99082258 - TM1040_2418 - ABC transporter related 2418 56.94 -1 2560570..2561433 + 287 99082259 - TM1040_2419 - binding-protein-dependent transport systems inner membrane component 2419 57.64 0 2561445..2562242 + 265 99082260 - TM1040_2420 - binding-protein-dependent transport systems inner membrane component 2420 60.57 0 2562244..2562522 + 92 99082261 - TM1040_2421 - hypothetical protein 2421 54.67 -1 2562766..2563215 + 149 99082262 - TM1040_2422 - CopY family transcriptional regulator 2422 60.54 0 2563205..2564347 + 380 99082263 - TM1040_2423 - peptidase M56, BlaR1 2423 56.96 -1 2564427..2565302 - 291 99082264 - TM1040_2424 - 3-hydroxybutyryl-CoA dehydrogenase 2424 56.15 -1 2565459..2566295 + 278 99082265 - TM1040_2425 - hypothetical protein 2425 61.29 0 2566366..2567295 - 309 99082266 - TM1040_2426 - electron transfer flavoprotein, alpha subunit 2426 59.82 0 2567295..2568053 - 252 99082267 - TM1040_2427 - electron transfer flavoprotein beta-subunit 2427 61.61 0 2568362..2568934 - 190 99082268 - TM1040_2428 - ATP:cob(I)alamin adenosyltransferase 2428 54.41 -1 2568936..2569139 - 67 99082269 - TM1040_2429 - hypothetical protein 2429 60.05 0 2569211..2570041 - 276 99082270 - TM1040_2430 - short-chain dehydrogenase/reductase SDR 2430 62.72 0 2570072..2570755 - 227 99082271 - TM1040_2431 - SH3, type 3 2431 59.94 0 2571061..2573409 + 782 99082272 - TM1040_2432 - DNA topoisomerase IV subunit A 2432 58.80 0 2573544..2574128 + 194 99082273 - TM1040_2433 - hypothetical protein 2433 59.10 0 2574242..2575417 + 391 99082274 - TM1040_2434 - elongation factor Tu 2434 58.49 0 2576659..2577612 - 317 99082275 - TM1040_2435 - hypothetical protein 2435 54.44 -1 2577596..2577865 - 89 99082276 - TM1040_2436 - phosphotransferase system, HPr 60.41 MEAN 3.16 STD DEV
Last Updated: Dec 04, 2008
Funding for this work was provided by the Peter Wall Institute for Advanced Studies. This service is hosted by the Brinkman Laboratory of the Department of Molecular Biology and Biochemistry at Simon Fraser University.
version
1.0