version 1.0
Silicibacter sp. TM1040, complete genome - 1..3200938 3030 proteins Pos %G+C SD Location Strand Length PID Gene Synonym Code Product 2091 61.29 0 2195880..2198258 + 792 99081932 - TM1040_2092 - ATP-dependent Clp protease ATP-binding subunit clpA 2092 58.79 0 2198470..2199066 - 198 99081933 - TM1040_2093 - hypothetical protein 2093 58.91 0 2199187..2199534 - 115 99081934 - TM1040_2094 - hypothetical protein 2094 63.14 0 2199768..2202122 - 784 99081935 - TM1040_2095 - hypothetical protein 2095 61.07 0 2202126..2203304 - 392 99081936 - TM1040_2096 - hypothetical protein 2096 59.85 0 2203383..2203910 - 175 99081937 - TM1040_2097 - ChaC-like protein 2097 65.88 +1 2203979..2204992 + 337 99081938 - TM1040_2098 - hypothetical protein 2098 65.97 +1 2205061..2205927 - 288 99081939 - TM1040_2099 - extensin-like 2099 64.84 +1 2205924..2206856 - 310 99081940 - TM1040_2100 - cyclohexadienyl dehydrogenase 2100 62.44 0 2206853..2207941 - 362 99081941 - TM1040_2101 - histidinol-phosphate aminotransferase 2101 60.00 0 2207938..2208177 - 79 99081942 - TM1040_2102 - hypothetical protein 2102 63.86 +1 2208354..2209778 - 474 99081943 - TM1040_2103 - aminotransferase, class V 2103 62.34 0 2209885..2210346 + 153 99081944 - TM1040_2104 - AsnC family transcriptional regulator 2104 62.18 0 2210392..2210859 - 155 99081945 - TM1040_2105 - GCN5-related N-acetyltransferase 2105 61.22 0 2210931..2211518 - 195 99081946 - TM1040_2106 - hypothetical protein 2106 59.90 0 2211714..2212334 - 206 99081947 rpsD TM1040_2107 - 30S ribosomal protein S4 2107 62.52 0 2212779..2213840 - 353 99081948 - TM1040_2108 - hypothetical protein 2108 62.53 0 2213973..2214914 - 313 99081949 - TM1040_2109 - hypothetical protein 2109 60.95 0 2215089..2215490 - 133 99081950 - TM1040_2110 - rhodanese-like protein 2110 64.51 +1 2215682..2216980 + 432 99081951 - TM1040_2111 - L-pipecolate dehydrogenase 2111 61.09 0 2217033..2217839 - 268 99081952 - TM1040_2112 - IclR family transcriptional regulator 2112 61.02 0 2217848..2219566 + 572 99081953 - TM1040_2113 - sulfatase 2113 59.89 0 2219895..2221355 + 486 99081954 - TM1040_2114 - hypothetical protein 2114 58.49 0 2221360..2222301 + 313 99081955 - TM1040_2115 - hypothetical protein 2115 60.90 0 2222305..2223102 + 265 99081956 - TM1040_2116 - transglutaminase-like 2116 59.59 0 2223110..2223844 + 244 99081957 - TM1040_2117 - 20S proteasome, A and B subunits 2117 64.20 +1 2223999..2225012 - 337 99081958 - TM1040_2118 - ribosomal large subunit pseudouridine synthase D 2118 58.58 0 2225035..2225343 + 102 99081959 - TM1040_2119 - hypothetical protein 2119 59.32 0 2225676..2226056 + 126 99081960 - TM1040_2120 - hypothetical protein 2120 64.69 +1 2226311..2227423 + 370 99081961 - TM1040_2121 - putative CheA signal transduction histidine kinases 2121 61.11 0 2227506..2227973 - 155 99081962 - TM1040_2122 - hypothetical protein 2122 61.06 0 2228459..2228779 - 106 99081963 - TM1040_2123 - hypothetical protein 2123 60.99 0 2228973..2230523 + 516 99081964 - TM1040_2124 - adenylate/guanylate cyclase 2124 59.58 0 2230638..2232287 - 549 99081965 - TM1040_2125 - choline/carnitine/betaine transport 2125 59.71 0 2232329..2232745 - 138 99081966 - TM1040_2126 - hypothetical protein 2126 58.18 0 2232999..2233481 - 160 99081967 - TM1040_2127 - NusB antitermination factor 2127 59.81 0 2233505..2234029 - 174 99081968 - TM1040_2128 - 6,7-dimethyl-8-ribityllumazine synthase 2128 60.27 0 2234044..2235168 - 374 99081969 - TM1040_2129 - GTP cyclohydrolase II / 3,4-dihydroxy-2-butanone 4-phosphate synthase 2129 65.34 +1 2235462..2236064 - 200 99081970 - TM1040_2130 - hypothetical protein 2130 60.89 0 2236064..2236669 - 201 99081971 - TM1040_2131 - riboflavin synthase subunit alpha 2131 61.61 0 2236933..2238237 + 434 99081972 - TM1040_2132 - capsule polysaccharide biosynthesis 2132 62.41 0 2238343..2239470 + 375 99081973 - TM1040_2133 - polysaccharide export protein 2133 62.65 0 2239477..2241516 + 679 99081974 - TM1040_2134 - capsule polysaccharide biosynthesis 2134 66.57 +1 2241583..2242659 - 358 99081975 - TM1040_2135 - 5-amino-6-(5-phosphoribosylamino)uracil reductase / diaminohydroxyphosphoribosylaminopyrimidine deaminase 2135 58.76 0 2242735..2243202 - 155 99081976 - TM1040_2136 - transcriptional regulator NrdR 2136 58.51 0 2243348..2243776 - 142 99081977 - TM1040_2137 - hypothetical protein 2137 60.57 0 2243781..2244239 - 152 99081978 - TM1040_2138 - hypothetical protein 2138 55.02 -1 2244370..2244678 - 102 99081979 - TM1040_2139 - hypothetical protein 2139 58.39 0 2244894..2245364 - 156 99081980 - TM1040_2140 - hypothetical protein 2140 58.60 0 2245649..2247643 - 664 99081981 - TM1040_2141 - RNA polymerase sigma factor RpoD 2141 61.94 0 2247809..2249818 - 669 99081982 dnaG TM1040_2142 - DNA primase 2142 56.58 -1 2249884..2250240 - 118 99081983 - TM1040_2143 - hypothetical protein 2143 61.29 0 2250279..2250836 - 185 99081984 - TM1040_2144 - sarcosine oxidase, gamma subunit 2144 64.19 +1 2250829..2253774 - 981 99081985 - TM1040_2145 - sarcosine oxidase alpha subunit family protein 2145 63.08 0 2253771..2254049 - 92 99081986 - TM1040_2146 - sarcosine oxidase, delta subunit, heterotetrameric 2146 59.69 0 2254116..2255420 - 434 99081987 - TM1040_2147 - sarcosine oxidase beta subunit family protein 2147 60.84 0 2255558..2256244 + 228 99081988 - TM1040_2148 - TetR family transcriptional regulator 2148 61.05 0 2256244..2257008 + 254 99081989 - TM1040_2149 - abortive infection protein 2149 61.15 0 2257115..2258545 - 476 99081990 - TM1040_2150 - Glu/Leu/Phe/Val dehydrogenase 2150 57.80 0 2258932..2260680 + 582 99081991 - TM1040_2151 - hypothetical protein 2151 57.38 0 2260677..2261225 + 182 99081992 - TM1040_2152 - TadE-like 2152 56.44 -1 2261229..2261834 + 201 99081993 - TM1040_2153 - hypothetical protein 2153 65.75 +1 2261944..2262378 - 144 99081994 - TM1040_2154 - hypothetical protein 2154 61.75 0 2262375..2263757 - 460 99081995 - TM1040_2155 - multi anti extrusion protein MatE 2155 59.71 0 2264063..2266777 + 904 99081996 - TM1040_2156 - diguanylate cyclase/phosphodiesterase 2156 62.60 0 2266835..2267326 - 163 99081997 - TM1040_2157 - hypothetical protein 2157 57.36 0 2267409..2268128 - 239 99081998 - TM1040_2158 - XRE family transcriptional regulator 2158 61.37 0 2268651..2270105 + 484 99081999 - TM1040_2159 - Na+/H+ antiporter NhaC 2159 59.10 0 2270248..2271159 + 303 99082000 - TM1040_2160 - Pirin-like 2160 61.55 0 2271476..2271964 - 162 99082001 - TM1040_2161 - GCN5-related N-acetyltransferase 2161 56.67 -1 2271969..2272598 - 209 99082002 - TM1040_2162 - TetR family transcriptional regulator 2162 67.66 +2 2272682..2272984 + 100 99082003 - TM1040_2163 - hypothetical protein 2163 63.79 +1 2273080..2274366 + 428 99082004 - TM1040_2164 - homoserine dehydrogenase 2164 65.55 +1 2274543..2275526 + 327 99082005 glpX TM1040_2165 - fructose 1,6-bisphosphatase II 2165 65.89 +1 2275574..2277385 + 603 99082006 - TM1040_2166 - single-stranded-DNA-specific exonuclease RecJ 2166 65.16 +1 2277923..2279320 - 465 99082007 - TM1040_2167 - GntR family transcriptional regulator 2167 62.20 0 2279428..2281509 - 693 99082008 - TM1040_2168 - molydopterin dinucleotide-binding region 2168 59.24 0 2281704..2282726 - 340 99082009 - TM1040_2169 - diguanylate cyclase 2169 57.31 0 2282723..2283310 - 195 99082010 - TM1040_2170 - hypothetical protein 2170 60.45 0 2283726..2285285 - 519 99082011 - TM1040_2171 - trimethylamine methyltransferase 2171 62.34 0 2285415..2286107 - 230 99082012 - TM1040_2172 - HAD family hydrolase 2172 61.40 0 2286144..2286428 - 94 99082013 - TM1040_2173 - hypothetical protein 2173 63.46 0 2286545..2287948 + 467 99082014 - TM1040_2174 - response regulator receiver modulated diguanylate cyclase 2174 62.75 0 2287994..2288503 - 169 99082015 - TM1040_2175 - hypothetical protein 2175 64.14 +1 2288500..2288895 - 131 99082016 - TM1040_2176 - hypothetical protein 2176 65.55 +1 2288888..2289514 - 208 99082017 - TM1040_2177 - RNA polymerase sigma factor 2177 61.90 0 2289585..2290088 - 167 99082018 - TM1040_2178 - hypothetical protein 2178 60.88 0 2290354..2290785 + 143 99082019 - TM1040_2179 - hypothetical protein 2179 62.96 0 2290874..2291602 + 242 99082020 - TM1040_2180 - NUDIX hydrolase 2180 62.35 0 2291629..2292531 - 300 99082021 - TM1040_2181 - hypothetical protein 2181 59.35 0 2292577..2293533 - 318 99082022 - TM1040_2182 - fatty acid desaturase 2182 60.87 0 2293595..2293801 - 68 99082023 - TM1040_2183 - hypothetical protein 2183 62.87 0 2293906..2294775 + 289 99082024 - TM1040_2184 - XRE family transcriptional regulator 2184 66.93 +2 2294846..2295598 - 250 99082025 fabG TM1040_2185 - 3-ketoacyl-(acyl-carrier-protein) reductase 2185 62.06 0 2295598..2297073 - 491 99082026 - TM1040_2186 - bifunctional 3-hydroxyacyl-CoA dehydrogenase/thioesterase 2186 62.21 0 2297086..2297646 - 186 99082027 - TM1040_2187 - Lipocalin-like 2187 61.11 0 2297712..2298629 - 305 99082028 - TM1040_2188 - hypothetical protein 2188 63.47 0 2298764..2299795 + 343 99082029 - TM1040_2189 - transcriptional regulator 2189 59.31 0 2299874..2300920 - 348 99082030 - TM1040_2190 - aldo/keto reductase 2190 63.16 0 2301194..2302420 + 408 99082031 - TM1040_2191 - major facilitator transporter 60.41 MEAN 3.16 STD DEV
Last Updated: Dec 04, 2008
Funding for this work was provided by the Peter Wall Institute for Advanced Studies. This service is hosted by the Brinkman Laboratory of the Department of Molecular Biology and Biochemistry at Simon Fraser University.
version
1.0