IslandPathversion 1.0

IslandPath Analysis: Silicibacter sp. TM1040



Each circle in the graphic corresponds to a predicted protein-coding ORF in the genome. Circle colours indicate if an ORF has a higher or lower %G+C than cutoffs you set below --(default is +/- 3.48 of the mean %G+C). Strike lines across the circles represent regions with dinucleotide bias above a pre-determined cutoff. Click on a circle to view a different portion of the table presented below the graph (default is the first 100 ORFs).
A yellow circle indicates its %G+C value is bigger than the high value. A green circle indicates its %G+C value is bigger than the low value and smaller than the high value. A pink circle indicates its %G+C value is smaller than the low value. A strike line across the circles indicates the region has dinucleotide bais above 1 STD DEV. A black verticle bar indicates a transfer RNA gene lies between the two ORFs. A purple verticle bar indicates a ribosomal RNA gene lies between the two ORFs. A deep blue verticle bar indicates both a tRNA and rRNA gene lie between the two ORFs. A black square indicates the dot is annotated as a transposase. A black triangle indicates the dot is annotated as an integrase. Low: High: Mean: 60.41 STD DEV: 3.16
Silicibacter sp. TM1040, complete genome - 1..3200938
3030 proteins
Pos	%G+C	SD	Location	Strand	Length	PID	Gene	Synonym	Code	Product
2082	 54.67	-1	2187810..2188334	-	174	99081923	-	TM1040_2083	-	hypothetical protein
2083	 60.22	0	2188344..2188700	-	118	99081924	-	TM1040_2084	-	hypothetical protein
2084	 63.53	0	2188825..2189238	-	137	99081925	-	TM1040_2085	-	F0F1 ATP synthase subunit epsilon
2085	 60.00	0	2189250..2190674	-	474	99081926	-	TM1040_2086	-	F0F1 ATP synthase subunit beta
2086	 61.87	0	2190695..2191570	-	291	99081927	-	TM1040_2087	-	F0F1 ATP synthase subunit gamma
2087	 60.12	0	2191586..2193127	-	513	99081928	-	TM1040_2088	-	F0F1 ATP synthase subunit alpha
2088	 59.79	0	2193128..2193781	-	217	99081929	-	TM1040_2089	-	ATP synthase F1, delta subunit
2089	 64.79	+1	2194104..2194850	-	248	99081930	-	TM1040_2090	-	hypothetical protein
2090	 59.56	0	2194905..2195720	+	271	99081931	-	TM1040_2091	-	hydroxyacylglutathione hydrolase
2091	 61.29	0	2195880..2198258	+	792	99081932	-	TM1040_2092	-	ATP-dependent Clp protease ATP-binding subunit clpA
2092	 58.79	0	2198470..2199066	-	198	99081933	-	TM1040_2093	-	hypothetical protein
2093	 58.91	0	2199187..2199534	-	115	99081934	-	TM1040_2094	-	hypothetical protein
2094	 63.14	0	2199768..2202122	-	784	99081935	-	TM1040_2095	-	hypothetical protein
2095	 61.07	0	2202126..2203304	-	392	99081936	-	TM1040_2096	-	hypothetical protein
2096	 59.85	0	2203383..2203910	-	175	99081937	-	TM1040_2097	-	ChaC-like protein
2097	 65.88	+1	2203979..2204992	+	337	99081938	-	TM1040_2098	-	hypothetical protein
2098	 65.97	+1	2205061..2205927	-	288	99081939	-	TM1040_2099	-	extensin-like
2099	 64.84	+1	2205924..2206856	-	310	99081940	-	TM1040_2100	-	cyclohexadienyl dehydrogenase
2100	 62.44	0	2206853..2207941	-	362	99081941	-	TM1040_2101	-	histidinol-phosphate aminotransferase
2101	 60.00	0	2207938..2208177	-	79	99081942	-	TM1040_2102	-	hypothetical protein
2102	 63.86	+1	2208354..2209778	-	474	99081943	-	TM1040_2103	-	aminotransferase, class V
2103	 62.34	0	2209885..2210346	+	153	99081944	-	TM1040_2104	-	AsnC family transcriptional regulator
2104	 62.18	0	2210392..2210859	-	155	99081945	-	TM1040_2105	-	GCN5-related N-acetyltransferase
2105	 61.22	0	2210931..2211518	-	195	99081946	-	TM1040_2106	-	hypothetical protein
2106	 59.90	0	2211714..2212334	-	206	99081947	rpsD	TM1040_2107	-	30S ribosomal protein S4
2107	 62.52	0	2212779..2213840	-	353	99081948	-	TM1040_2108	-	hypothetical protein
2108	 62.53	0	2213973..2214914	-	313	99081949	-	TM1040_2109	-	hypothetical protein
2109	 60.95	0	2215089..2215490	-	133	99081950	-	TM1040_2110	-	rhodanese-like protein
2110	 64.51	+1	2215682..2216980	+	432	99081951	-	TM1040_2111	-	L-pipecolate dehydrogenase
2111	 61.09	0	2217033..2217839	-	268	99081952	-	TM1040_2112	-	IclR family transcriptional regulator
2112	 61.02	0	2217848..2219566	+	572	99081953	-	TM1040_2113	-	sulfatase
2113	 59.89	0	2219895..2221355	+	486	99081954	-	TM1040_2114	-	hypothetical protein
2114	 58.49	0	2221360..2222301	+	313	99081955	-	TM1040_2115	-	hypothetical protein
2115	 60.90	0	2222305..2223102	+	265	99081956	-	TM1040_2116	-	transglutaminase-like
2116	 59.59	0	2223110..2223844	+	244	99081957	-	TM1040_2117	-	20S proteasome, A and B subunits
2117	 64.20	+1	2223999..2225012	-	337	99081958	-	TM1040_2118	-	ribosomal large subunit pseudouridine synthase D
2118	 58.58	0	2225035..2225343	+	102	99081959	-	TM1040_2119	-	hypothetical protein
2119	 59.32	0	2225676..2226056	+	126	99081960	-	TM1040_2120	-	hypothetical protein
2120	 64.69	+1	2226311..2227423	+	370	99081961	-	TM1040_2121	-	putative CheA signal transduction histidine kinases
2121	 61.11	0	2227506..2227973	-	155	99081962	-	TM1040_2122	-	hypothetical protein
2122	 61.06	0	2228459..2228779	-	106	99081963	-	TM1040_2123	-	hypothetical protein
2123	 60.99	0	2228973..2230523	+	516	99081964	-	TM1040_2124	-	adenylate/guanylate cyclase
2124	 59.58	0	2230638..2232287	-	549	99081965	-	TM1040_2125	-	choline/carnitine/betaine transport
2125	 59.71	0	2232329..2232745	-	138	99081966	-	TM1040_2126	-	hypothetical protein
2126	 58.18	0	2232999..2233481	-	160	99081967	-	TM1040_2127	-	NusB antitermination factor
2127	 59.81	0	2233505..2234029	-	174	99081968	-	TM1040_2128	-	6,7-dimethyl-8-ribityllumazine synthase
2128	 60.27	0	2234044..2235168	-	374	99081969	-	TM1040_2129	-	GTP cyclohydrolase II / 3,4-dihydroxy-2-butanone 4-phosphate synthase
2129	 65.34	+1	2235462..2236064	-	200	99081970	-	TM1040_2130	-	hypothetical protein
2130	 60.89	0	2236064..2236669	-	201	99081971	-	TM1040_2131	-	riboflavin synthase subunit alpha
2131	 61.61	0	2236933..2238237	+	434	99081972	-	TM1040_2132	-	capsule polysaccharide biosynthesis
2132	 62.41	0	2238343..2239470	+	375	99081973	-	TM1040_2133	-	polysaccharide export protein
2133	 62.65	0	2239477..2241516	+	679	99081974	-	TM1040_2134	-	capsule polysaccharide biosynthesis
2134	 66.57	+1	2241583..2242659	-	358	99081975	-	TM1040_2135	-	5-amino-6-(5-phosphoribosylamino)uracil reductase / diaminohydroxyphosphoribosylaminopyrimidine deaminase
2135	 58.76	0	2242735..2243202	-	155	99081976	-	TM1040_2136	-	transcriptional regulator NrdR
2136	 58.51	0	2243348..2243776	-	142	99081977	-	TM1040_2137	-	hypothetical protein
2137	 60.57	0	2243781..2244239	-	152	99081978	-	TM1040_2138	-	hypothetical protein
2138	 55.02	-1	2244370..2244678	-	102	99081979	-	TM1040_2139	-	hypothetical protein
2139	 58.39	0	2244894..2245364	-	156	99081980	-	TM1040_2140	-	hypothetical protein
2140	 58.60	0	2245649..2247643	-	664	99081981	-	TM1040_2141	-	RNA polymerase sigma factor RpoD
2141	 61.94	0	2247809..2249818	-	669	99081982	dnaG	TM1040_2142	-	DNA primase
2142	 56.58	-1	2249884..2250240	-	118	99081983	-	TM1040_2143	-	hypothetical protein
2143	 61.29	0	2250279..2250836	-	185	99081984	-	TM1040_2144	-	sarcosine oxidase, gamma subunit
2144	 64.19	+1	2250829..2253774	-	981	99081985	-	TM1040_2145	-	sarcosine oxidase alpha subunit family protein
2145	 63.08	0	2253771..2254049	-	92	99081986	-	TM1040_2146	-	sarcosine oxidase, delta subunit, heterotetrameric
2146	 59.69	0	2254116..2255420	-	434	99081987	-	TM1040_2147	-	sarcosine oxidase beta subunit family protein
2147	 60.84	0	2255558..2256244	+	228	99081988	-	TM1040_2148	-	TetR family transcriptional regulator
2148	 61.05	0	2256244..2257008	+	254	99081989	-	TM1040_2149	-	abortive infection protein
2149	 61.15	0	2257115..2258545	-	476	99081990	-	TM1040_2150	-	Glu/Leu/Phe/Val dehydrogenase
2150	 57.80	0	2258932..2260680	+	582	99081991	-	TM1040_2151	-	hypothetical protein
2151	 57.38	0	2260677..2261225	+	182	99081992	-	TM1040_2152	-	TadE-like
2152	 56.44	-1	2261229..2261834	+	201	99081993	-	TM1040_2153	-	hypothetical protein
2153	 65.75	+1	2261944..2262378	-	144	99081994	-	TM1040_2154	-	hypothetical protein
2154	 61.75	0	2262375..2263757	-	460	99081995	-	TM1040_2155	-	multi anti extrusion protein MatE
2155	 59.71	0	2264063..2266777	+	904	99081996	-	TM1040_2156	-	diguanylate cyclase/phosphodiesterase
2156	 62.60	0	2266835..2267326	-	163	99081997	-	TM1040_2157	-	hypothetical protein
2157	 57.36	0	2267409..2268128	-	239	99081998	-	TM1040_2158	-	XRE family transcriptional regulator
2158	 61.37	0	2268651..2270105	+	484	99081999	-	TM1040_2159	-	Na+/H+ antiporter NhaC
2159	 59.10	0	2270248..2271159	+	303	99082000	-	TM1040_2160	-	Pirin-like
2160	 61.55	0	2271476..2271964	-	162	99082001	-	TM1040_2161	-	GCN5-related N-acetyltransferase
2161	 56.67	-1	2271969..2272598	-	209	99082002	-	TM1040_2162	-	TetR family transcriptional regulator
2162	 67.66	+2	2272682..2272984	+	100	99082003	-	TM1040_2163	-	hypothetical protein
2163	 63.79	+1	2273080..2274366	+	428	99082004	-	TM1040_2164	-	homoserine dehydrogenase
2164	 65.55	+1	2274543..2275526	+	327	99082005	glpX	TM1040_2165	-	fructose 1,6-bisphosphatase II
2165	 65.89	+1	2275574..2277385	+	603	99082006	-	TM1040_2166	-	single-stranded-DNA-specific exonuclease RecJ
2166	 65.16	+1	2277923..2279320	-	465	99082007	-	TM1040_2167	-	GntR family transcriptional regulator
2167	 62.20	0	2279428..2281509	-	693	99082008	-	TM1040_2168	-	molydopterin dinucleotide-binding region
2168	 59.24	0	2281704..2282726	-	340	99082009	-	TM1040_2169	-	diguanylate cyclase
2169	 57.31	0	2282723..2283310	-	195	99082010	-	TM1040_2170	-	hypothetical protein
2170	 60.45	0	2283726..2285285	-	519	99082011	-	TM1040_2171	-	trimethylamine methyltransferase
2171	 62.34	0	2285415..2286107	-	230	99082012	-	TM1040_2172	-	HAD family hydrolase
2172	 61.40	0	2286144..2286428	-	94	99082013	-	TM1040_2173	-	hypothetical protein
2173	 63.46	0	2286545..2287948	+	467	99082014	-	TM1040_2174	-	response regulator receiver modulated diguanylate cyclase
2174	 62.75	0	2287994..2288503	-	169	99082015	-	TM1040_2175	-	hypothetical protein
2175	 64.14	+1	2288500..2288895	-	131	99082016	-	TM1040_2176	-	hypothetical protein
2176	 65.55	+1	2288888..2289514	-	208	99082017	-	TM1040_2177	-	RNA polymerase sigma factor
2177	 61.90	0	2289585..2290088	-	167	99082018	-	TM1040_2178	-	hypothetical protein
2178	 60.88	0	2290354..2290785	+	143	99082019	-	TM1040_2179	-	hypothetical protein
2179	 62.96	0	2290874..2291602	+	242	99082020	-	TM1040_2180	-	NUDIX hydrolase
2180	 62.35	0	2291629..2292531	-	300	99082021	-	TM1040_2181	-	hypothetical protein
2181	 59.35	0	2292577..2293533	-	318	99082022	-	TM1040_2182	-	fatty acid desaturase
60.41	MEAN

3.16	STD DEV



Last Updated: Dec 04, 2008

Funding for this work was provided by the Peter Wall Institute for Advanced Studies. This service is hosted by the Brinkman Laboratory of the Department of Molecular Biology and Biochemistry at Simon Fraser University.