version 1.0
Silicibacter sp. TM1040, complete genome - 1..3200938 3030 proteins Pos %G+C SD Location Strand Length PID Gene Synonym Code Product 2050 64.60 +1 2154527..2155009 + 160 99081891 - TM1040_2051 - hypothetical protein 2051 60.22 0 2155337..2155801 + 154 99081892 - TM1040_2052 - CoA-binding 2052 62.06 0 2155876..2156439 - 187 99081893 - TM1040_2053 - 3-dehydroquinate dehydratase 2053 61.85 0 2156958..2158784 + 608 99081894 - TM1040_2054 - thiamine biosynthesis protein ThiC 2054 66.02 +1 2158951..2159724 - 257 99081895 - TM1040_2055 - hypothetical protein 2055 65.50 +1 2159766..2160791 - 341 99081896 - TM1040_2056 - allophanate hydrolase subunit 2 2056 67.06 +2 2160788..2161558 - 256 99081897 - TM1040_2057 - allophanate hydrolase subunit 1 2057 65.36 +1 2161695..2162609 + 304 99081898 - TM1040_2058 - LysR family transcriptional regulator 2058 58.18 0 2162703..2163857 + 384 99081899 - TM1040_2059 - Rieske (2Fe-2S) region 2059 62.59 0 2163854..2164123 + 89 99081900 - TM1040_2060 - hypothetical protein 2060 63.63 +1 2164175..2165095 - 306 99081901 - TM1040_2061 - LysR family transcriptional regulator 2061 59.57 0 2165213..2165494 + 93 99081902 - TM1040_2062 - hypothetical protein 2062 61.46 0 2165626..2168046 + 806 99081903 - TM1040_2063 - FAD dependent oxidoreductase 2063 65.94 +1 2168043..2169287 - 414 99081904 - TM1040_2064 - FAD dependent oxidoreductase 2064 63.82 +1 2169390..2169740 - 116 99081905 - TM1040_2065 - endoribonuclease L-PSP 2065 63.46 0 2169776..2170804 - 342 99081906 - TM1040_2066 - histone deacetylase superfamily protein 2066 59.98 0 2170824..2172110 - 428 99081907 - TM1040_2067 - TRAP dicarboxylate transporter- DctM subunit 2067 57.27 0 2172115..2172678 - 187 99081908 - TM1040_2068 - hypothetical protein 2068 58.68 0 2172766..2173767 - 333 99081909 - TM1040_2069 - TRAP dicarboxylate transporter- DctP subunit 2069 61.99 0 2174017..2175000 + 327 99081910 - TM1040_2070 - LysR family transcriptional regulator 2070 62.92 0 2175116..2176048 + 310 99081911 - TM1040_2071 - FMN adenylyltransferase / riboflavin kinase 2071 61.57 0 2176058..2176528 + 156 99081912 - TM1040_2072 - hypothetical protein 2072 66.55 +1 2176578..2177414 - 278 99081913 - TM1040_2073 - alpha/beta hydrolase fold 2073 62.28 0 2177411..2178025 - 204 99081914 - TM1040_2074 - DSBA oxidoreductase 2074 60.22 0 2178130..2179152 + 340 99081915 - TM1040_2075 - ribose-phosphate pyrophosphokinase 2075 53.65 -2 2179542..2180870 + 442 99081916 - TM1040_2076 - dTDP-4-dehydrorhamnose reductase 2076 55.70 -1 2180867..2181340 + 157 99081917 - TM1040_2077 - hypothetical protein 2077 61.34 0 2181427..2182290 + 287 99081918 - TM1040_2078 - hypothetical protein 2078 59.04 0 2182353..2183846 - 497 99081919 - TM1040_2079 - hypothetical protein 2079 66.54 +1 2183985..2186429 - 814 99081920 - TM1040_2080 - heavy metal translocating P-type ATPase 2080 59.89 0 2186594..2186947 - 117 99081921 - TM1040_2081 - MerR family transcriptional regulator 2081 58.05 0 2187014..2187454 + 146 99081922 - TM1040_2082 - hypothetical protein 2082 54.67 -1 2187810..2188334 - 174 99081923 - TM1040_2083 - hypothetical protein 2083 60.22 0 2188344..2188700 - 118 99081924 - TM1040_2084 - hypothetical protein 2084 63.53 0 2188825..2189238 - 137 99081925 - TM1040_2085 - F0F1 ATP synthase subunit epsilon 2085 60.00 0 2189250..2190674 - 474 99081926 - TM1040_2086 - F0F1 ATP synthase subunit beta 2086 61.87 0 2190695..2191570 - 291 99081927 - TM1040_2087 - F0F1 ATP synthase subunit gamma 2087 60.12 0 2191586..2193127 - 513 99081928 - TM1040_2088 - F0F1 ATP synthase subunit alpha 2088 59.79 0 2193128..2193781 - 217 99081929 - TM1040_2089 - ATP synthase F1, delta subunit 2089 64.79 +1 2194104..2194850 - 248 99081930 - TM1040_2090 - hypothetical protein 2090 59.56 0 2194905..2195720 + 271 99081931 - TM1040_2091 - hydroxyacylglutathione hydrolase 2091 61.29 0 2195880..2198258 + 792 99081932 - TM1040_2092 - ATP-dependent Clp protease ATP-binding subunit clpA 2092 58.79 0 2198470..2199066 - 198 99081933 - TM1040_2093 - hypothetical protein 2093 58.91 0 2199187..2199534 - 115 99081934 - TM1040_2094 - hypothetical protein 2094 63.14 0 2199768..2202122 - 784 99081935 - TM1040_2095 - hypothetical protein 2095 61.07 0 2202126..2203304 - 392 99081936 - TM1040_2096 - hypothetical protein 2096 59.85 0 2203383..2203910 - 175 99081937 - TM1040_2097 - ChaC-like protein 2097 65.88 +1 2203979..2204992 + 337 99081938 - TM1040_2098 - hypothetical protein 2098 65.97 +1 2205061..2205927 - 288 99081939 - TM1040_2099 - extensin-like 2099 64.84 +1 2205924..2206856 - 310 99081940 - TM1040_2100 - cyclohexadienyl dehydrogenase 2100 62.44 0 2206853..2207941 - 362 99081941 - TM1040_2101 - histidinol-phosphate aminotransferase 2101 60.00 0 2207938..2208177 - 79 99081942 - TM1040_2102 - hypothetical protein 2102 63.86 +1 2208354..2209778 - 474 99081943 - TM1040_2103 - aminotransferase, class V 2103 62.34 0 2209885..2210346 + 153 99081944 - TM1040_2104 - AsnC family transcriptional regulator 2104 62.18 0 2210392..2210859 - 155 99081945 - TM1040_2105 - GCN5-related N-acetyltransferase 2105 61.22 0 2210931..2211518 - 195 99081946 - TM1040_2106 - hypothetical protein 2106 59.90 0 2211714..2212334 - 206 99081947 rpsD TM1040_2107 - 30S ribosomal protein S4 2107 62.52 0 2212779..2213840 - 353 99081948 - TM1040_2108 - hypothetical protein 2108 62.53 0 2213973..2214914 - 313 99081949 - TM1040_2109 - hypothetical protein 2109 60.95 0 2215089..2215490 - 133 99081950 - TM1040_2110 - rhodanese-like protein 2110 64.51 +1 2215682..2216980 + 432 99081951 - TM1040_2111 - L-pipecolate dehydrogenase 2111 61.09 0 2217033..2217839 - 268 99081952 - TM1040_2112 - IclR family transcriptional regulator 2112 61.02 0 2217848..2219566 + 572 99081953 - TM1040_2113 - sulfatase 2113 59.89 0 2219895..2221355 + 486 99081954 - TM1040_2114 - hypothetical protein 2114 58.49 0 2221360..2222301 + 313 99081955 - TM1040_2115 - hypothetical protein 2115 60.90 0 2222305..2223102 + 265 99081956 - TM1040_2116 - transglutaminase-like 2116 59.59 0 2223110..2223844 + 244 99081957 - TM1040_2117 - 20S proteasome, A and B subunits 2117 64.20 +1 2223999..2225012 - 337 99081958 - TM1040_2118 - ribosomal large subunit pseudouridine synthase D 2118 58.58 0 2225035..2225343 + 102 99081959 - TM1040_2119 - hypothetical protein 2119 59.32 0 2225676..2226056 + 126 99081960 - TM1040_2120 - hypothetical protein 2120 64.69 +1 2226311..2227423 + 370 99081961 - TM1040_2121 - putative CheA signal transduction histidine kinases 2121 61.11 0 2227506..2227973 - 155 99081962 - TM1040_2122 - hypothetical protein 2122 61.06 0 2228459..2228779 - 106 99081963 - TM1040_2123 - hypothetical protein 2123 60.99 0 2228973..2230523 + 516 99081964 - TM1040_2124 - adenylate/guanylate cyclase 2124 59.58 0 2230638..2232287 - 549 99081965 - TM1040_2125 - choline/carnitine/betaine transport 2125 59.71 0 2232329..2232745 - 138 99081966 - TM1040_2126 - hypothetical protein 2126 58.18 0 2232999..2233481 - 160 99081967 - TM1040_2127 - NusB antitermination factor 2127 59.81 0 2233505..2234029 - 174 99081968 - TM1040_2128 - 6,7-dimethyl-8-ribityllumazine synthase 2128 60.27 0 2234044..2235168 - 374 99081969 - TM1040_2129 - GTP cyclohydrolase II / 3,4-dihydroxy-2-butanone 4-phosphate synthase 2129 65.34 +1 2235462..2236064 - 200 99081970 - TM1040_2130 - hypothetical protein 2130 60.89 0 2236064..2236669 - 201 99081971 - TM1040_2131 - riboflavin synthase subunit alpha 2131 61.61 0 2236933..2238237 + 434 99081972 - TM1040_2132 - capsule polysaccharide biosynthesis 2132 62.41 0 2238343..2239470 + 375 99081973 - TM1040_2133 - polysaccharide export protein 2133 62.65 0 2239477..2241516 + 679 99081974 - TM1040_2134 - capsule polysaccharide biosynthesis 2134 66.57 +1 2241583..2242659 - 358 99081975 - TM1040_2135 - 5-amino-6-(5-phosphoribosylamino)uracil reductase / diaminohydroxyphosphoribosylaminopyrimidine deaminase 2135 58.76 0 2242735..2243202 - 155 99081976 - TM1040_2136 - transcriptional regulator NrdR 2136 58.51 0 2243348..2243776 - 142 99081977 - TM1040_2137 - hypothetical protein 2137 60.57 0 2243781..2244239 - 152 99081978 - TM1040_2138 - hypothetical protein 2138 55.02 -1 2244370..2244678 - 102 99081979 - TM1040_2139 - hypothetical protein 2139 58.39 0 2244894..2245364 - 156 99081980 - TM1040_2140 - hypothetical protein 2140 58.60 0 2245649..2247643 - 664 99081981 - TM1040_2141 - RNA polymerase sigma factor RpoD 2141 61.94 0 2247809..2249818 - 669 99081982 dnaG TM1040_2142 - DNA primase 2142 56.58 -1 2249884..2250240 - 118 99081983 - TM1040_2143 - hypothetical protein 2143 61.29 0 2250279..2250836 - 185 99081984 - TM1040_2144 - sarcosine oxidase, gamma subunit 2144 64.19 +1 2250829..2253774 - 981 99081985 - TM1040_2145 - sarcosine oxidase alpha subunit family protein 2145 63.08 0 2253771..2254049 - 92 99081986 - TM1040_2146 - sarcosine oxidase, delta subunit, heterotetrameric 2146 59.69 0 2254116..2255420 - 434 99081987 - TM1040_2147 - sarcosine oxidase beta subunit family protein 2147 60.84 0 2255558..2256244 + 228 99081988 - TM1040_2148 - TetR family transcriptional regulator 2148 61.05 0 2256244..2257008 + 254 99081989 - TM1040_2149 - abortive infection protein 2149 61.15 0 2257115..2258545 - 476 99081990 - TM1040_2150 - Glu/Leu/Phe/Val dehydrogenase 60.41 MEAN 3.16 STD DEV
Last Updated: Dec 04, 2008
Funding for this work was provided by the Peter Wall Institute for Advanced Studies. This service is hosted by the Brinkman Laboratory of the Department of Molecular Biology and Biochemistry at Simon Fraser University.
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