IslandPath Analysis: Silicibacter sp. TM1040



Each circle in the graphic corresponds to a predicted protein-coding ORF in the genome.
Circle colours indicate if an ORF has a higher or lower %G+C than cutoffs you set below
--(default is +/- 3.48 of the mean %G+C).
Strike lines across the circles represent regions with dinucleotide bias above a pre-determined cutoff.
Click on a circle to view a different portion of the table presented below the graph (default is the first 100 ORFs).




A yellow circle indicates its %G+C value is bigger than the high value.
A green circle indicates its %G+C value is bigger than the low value and smaller than the high value.
A pink circle indicates its %G+C value is smaller than the low value.

A strike line across the circles indicates the region has dinucleotide bais above 1 STD DEV.
A black verticle bar indicates a transfer RNA gene lies between the two ORFs.
A purple verticle bar indicates a ribosomal RNA gene lies between the two ORFs.
A deep blue verticle bar indicates both a tRNA and rRNA gene lie between the two ORFs.
A black square indicates the dot is annotated as a transposase.
A black triangle indicates the dot is annotated as an integrase.


Low:  High:    Mean: 60.41   STD DEV: 3.16
Silicibacter sp. TM1040, complete genome - 1..3200938
3030 proteins
Pos	%G+C	SD	Location	Strand	Length	PID	Gene	Synonym	Code	Product
2011	 47.88	-2	2116783..2117112	+	109	99081852	-	TM1040_2012	-	hypothetical protein
2012	 55.83	-1	2117215..2117454	-	79	99081853	-	TM1040_2013	-	hypothetical protein
2013	 61.31	0	2117561..2118064	+	167	99081854	-	TM1040_2014	-	cell division protein MraZ
2014	 64.85	+1	2118068..2119057	+	329	99081855	-	TM1040_2015	-	methyltransferase
2015	 61.78	0	2119057..2119404	+	115	99081856	-	TM1040_2016	-	hypothetical protein
2016	 63.64	+1	2119401..2121182	+	593	99081857	-	TM1040_2017	-	peptidoglycan glycosyltransferase
2017	 66.40	+1	2121197..2122681	+	494	99081858	murE	TM1040_2018	-	UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
2018	 66.81	+2	2122678..2124069	+	463	99081859	-	TM1040_2019	-	UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
2019	 60.30	0	2124111..2125193	+	360	99081860	-	TM1040_2020	-	phospho-N-acetylmuramoyl-pentapeptide-transferase
2020	 57.45	0	2125506..2126579	-	357	99081861	-	TM1040_2021	-	hypothetical protein
2021	 66.67	+1	2126599..2127684	-	361	99081862	-	TM1040_2022	-	putative Mrp (multidrug resistance-associated proteins) family protein
2022	 59.01	0	2128003..2128224	+	73	99081863	-	TM1040_2023	-	hypothetical protein
2023	 61.96	0	2128764..2131208	-	814	99081864	-	TM1040_2024	-	ATP-dependent DNA helicase Rep
2024	 61.18	0	2131376..2131885	+	169	99081865	-	TM1040_2025	-	BLUF domain-containing protein
2025	 66.32	+1	2132061..2133230	+	389	99081866	-	TM1040_2026	-	L-lactate dehydrogenase (cytochrome)
2026	 62.76	0	2133373..2133807	-	144	99081867	-	TM1040_2027	-	BLUF domain-containing protein
2027	 62.28	0	2134246..2137686	+	1146	99081868	-	TM1040_2028	-	pyruvate carboxylase
2028	 53.80	-2	2137758..2138666	+	302	99081869	-	TM1040_2029	-	hypothetical protein
2029	 61.73	0	2138667..2139152	-	161	99081870	-	TM1040_2030	-	hypothetical protein
2030	 62.01	0	2140200..2141552	+	450	99081871	-	TM1040_2031	-	aminotransferase
2031	 51.67	-2	2141699..2141938	-	79	99081872	-	TM1040_2032	-	AsnC family transcriptional regulator
2032	 63.10	0	2142137..2142724	+	195	99081873	hisB	TM1040_2033	-	imidazoleglycerol-phosphate dehydratase
2033	 61.50	0	2142831..2143469	+	212	99081874	hisH	TM1040_2034	-	imidazole glycerol phosphate synthase subunit HisH
2034	 67.08	+2	2143723..2144454	-	243	99081875	-	TM1040_2035	-	AraC family transcriptional regulator
2035	 60.71	0	2144634..2145170	+	178	99081876	-	TM1040_2036	-	redoxin
2036	 59.52	0	2145288..2145539	+	83	99081877	-	TM1040_2037	-	hypothetical protein
2037	 59.49	0	2145590..2145979	-	129	99081878	-	TM1040_2038	-	hypothetical protein
2038	 63.07	0	2146291..2147013	+	240	99081879	-	TM1040_2039	-	1-(5-phosphoribosyl)-5-[(5-phosphoribosylamino)methylideneamino] imidazole-4-carboxamide isomerase
2039	 60.57	0	2147329..2147820	+	163	99081880	-	TM1040_2040	-	hypothetical protein
2040	 62.73	0	2147963..2148724	+	253	99081881	-	TM1040_2041	-	imidazole glycerol phosphate synthase subunit HisF
2041	 59.75	0	2148721..2149038	+	105	99081882	hisE	TM1040_2042	-	phosphoribosyl-ATP pyrophosphatase
2042	 61.43	0	2149095..2150258	-	387	99081883	-	TM1040_2043	-	hypothetical protein
2043	 61.08	0	2150402..2150866	-	154	99081884	-	TM1040_2044	-	7-cyano-7-deazaguanine reductase
2044	 65.11	+1	2150883..2151590	-	235	99081885	-	TM1040_2045	-	radical SAM family protein
2045	 58.19	0	2151587..2151940	-	117	99081886	-	TM1040_2046	-	putative 6-pyruvoyl tetrahydropterin synthase
2046	 63.25	0	2151940..2152641	-	233	99081887	-	TM1040_2047	-	ExsB
2047	 56.67	-1	2152684..2152923	+	79	99081888	-	TM1040_2048	-	hypothetical protein
2048	 59.19	0	2153152..2153940	+	262	99081889	-	TM1040_2049	-	RNA methyltransferase TrmH, group 3
2049	 57.02	-1	2154013..2154354	+	113	99081890	-	TM1040_2050	-	hypothetical protein
2050	 64.60	+1	2154527..2155009	+	160	99081891	-	TM1040_2051	-	hypothetical protein
2051	 60.22	0	2155337..2155801	+	154	99081892	-	TM1040_2052	-	CoA-binding
2052	 62.06	0	2155876..2156439	-	187	99081893	-	TM1040_2053	-	3-dehydroquinate dehydratase
2053	 61.85	0	2156958..2158784	+	608	99081894	-	TM1040_2054	-	thiamine biosynthesis protein ThiC
2054	 66.02	+1	2158951..2159724	-	257	99081895	-	TM1040_2055	-	hypothetical protein
2055	 65.50	+1	2159766..2160791	-	341	99081896	-	TM1040_2056	-	allophanate hydrolase subunit 2
2056	 67.06	+2	2160788..2161558	-	256	99081897	-	TM1040_2057	-	allophanate hydrolase subunit 1
2057	 65.36	+1	2161695..2162609	+	304	99081898	-	TM1040_2058	-	LysR family transcriptional regulator
2058	 58.18	0	2162703..2163857	+	384	99081899	-	TM1040_2059	-	Rieske (2Fe-2S) region
2059	 62.59	0	2163854..2164123	+	89	99081900	-	TM1040_2060	-	hypothetical protein
2060	 63.63	+1	2164175..2165095	-	306	99081901	-	TM1040_2061	-	LysR family transcriptional regulator
2061	 59.57	0	2165213..2165494	+	93	99081902	-	TM1040_2062	-	hypothetical protein
2062	 61.46	0	2165626..2168046	+	806	99081903	-	TM1040_2063	-	FAD dependent oxidoreductase
2063	 65.94	+1	2168043..2169287	-	414	99081904	-	TM1040_2064	-	FAD dependent oxidoreductase
2064	 63.82	+1	2169390..2169740	-	116	99081905	-	TM1040_2065	-	endoribonuclease L-PSP
2065	 63.46	0	2169776..2170804	-	342	99081906	-	TM1040_2066	-	histone deacetylase superfamily protein
2066	 59.98	0	2170824..2172110	-	428	99081907	-	TM1040_2067	-	TRAP dicarboxylate transporter- DctM subunit
2067	 57.27	0	2172115..2172678	-	187	99081908	-	TM1040_2068	-	hypothetical protein
2068	 58.68	0	2172766..2173767	-	333	99081909	-	TM1040_2069	-	TRAP dicarboxylate transporter- DctP subunit
2069	 61.99	0	2174017..2175000	+	327	99081910	-	TM1040_2070	-	LysR family transcriptional regulator
2070	 62.92	0	2175116..2176048	+	310	99081911	-	TM1040_2071	-	FMN adenylyltransferase / riboflavin kinase
2071	 61.57	0	2176058..2176528	+	156	99081912	-	TM1040_2072	-	hypothetical protein
2072	 66.55	+1	2176578..2177414	-	278	99081913	-	TM1040_2073	-	alpha/beta hydrolase fold
2073	 62.28	0	2177411..2178025	-	204	99081914	-	TM1040_2074	-	DSBA oxidoreductase
2074	 60.22	0	2178130..2179152	+	340	99081915	-	TM1040_2075	-	ribose-phosphate pyrophosphokinase
2075	 53.65	-2	2179542..2180870	+	442	99081916	-	TM1040_2076	-	dTDP-4-dehydrorhamnose reductase
2076	 55.70	-1	2180867..2181340	+	157	99081917	-	TM1040_2077	-	hypothetical protein
2077	 61.34	0	2181427..2182290	+	287	99081918	-	TM1040_2078	-	hypothetical protein
2078	 59.04	0	2182353..2183846	-	497	99081919	-	TM1040_2079	-	hypothetical protein
2079	 66.54	+1	2183985..2186429	-	814	99081920	-	TM1040_2080	-	heavy metal translocating P-type ATPase
2080	 59.89	0	2186594..2186947	-	117	99081921	-	TM1040_2081	-	MerR family transcriptional regulator
2081	 58.05	0	2187014..2187454	+	146	99081922	-	TM1040_2082	-	hypothetical protein
2082	 54.67	-1	2187810..2188334	-	174	99081923	-	TM1040_2083	-	hypothetical protein
2083	 60.22	0	2188344..2188700	-	118	99081924	-	TM1040_2084	-	hypothetical protein
2084	 63.53	0	2188825..2189238	-	137	99081925	-	TM1040_2085	-	F0F1 ATP synthase subunit epsilon
2085	 60.00	0	2189250..2190674	-	474	99081926	-	TM1040_2086	-	F0F1 ATP synthase subunit beta
2086	 61.87	0	2190695..2191570	-	291	99081927	-	TM1040_2087	-	F0F1 ATP synthase subunit gamma
2087	 60.12	0	2191586..2193127	-	513	99081928	-	TM1040_2088	-	F0F1 ATP synthase subunit alpha
2088	 59.79	0	2193128..2193781	-	217	99081929	-	TM1040_2089	-	ATP synthase F1, delta subunit
2089	 64.79	+1	2194104..2194850	-	248	99081930	-	TM1040_2090	-	hypothetical protein
2090	 59.56	0	2194905..2195720	+	271	99081931	-	TM1040_2091	-	hydroxyacylglutathione hydrolase
2091	 61.29	0	2195880..2198258	+	792	99081932	-	TM1040_2092	-	ATP-dependent Clp protease ATP-binding subunit clpA
2092	 58.79	0	2198470..2199066	-	198	99081933	-	TM1040_2093	-	hypothetical protein
2093	 58.91	0	2199187..2199534	-	115	99081934	-	TM1040_2094	-	hypothetical protein
2094	 63.14	0	2199768..2202122	-	784	99081935	-	TM1040_2095	-	hypothetical protein
2095	 61.07	0	2202126..2203304	-	392	99081936	-	TM1040_2096	-	hypothetical protein
2096	 59.85	0	2203383..2203910	-	175	99081937	-	TM1040_2097	-	ChaC-like protein
2097	 65.88	+1	2203979..2204992	+	337	99081938	-	TM1040_2098	-	hypothetical protein
2098	 65.97	+1	2205061..2205927	-	288	99081939	-	TM1040_2099	-	extensin-like
2099	 64.84	+1	2205924..2206856	-	310	99081940	-	TM1040_2100	-	cyclohexadienyl dehydrogenase
2100	 62.44	0	2206853..2207941	-	362	99081941	-	TM1040_2101	-	histidinol-phosphate aminotransferase
2101	 60.00	0	2207938..2208177	-	79	99081942	-	TM1040_2102	-	hypothetical protein
2102	 63.86	+1	2208354..2209778	-	474	99081943	-	TM1040_2103	-	aminotransferase, class V
2103	 62.34	0	2209885..2210346	+	153	99081944	-	TM1040_2104	-	AsnC family transcriptional regulator
2104	 62.18	0	2210392..2210859	-	155	99081945	-	TM1040_2105	-	GCN5-related N-acetyltransferase
2105	 61.22	0	2210931..2211518	-	195	99081946	-	TM1040_2106	-	hypothetical protein
2106	 59.90	0	2211714..2212334	-	206	99081947	rpsD	TM1040_2107	-	30S ribosomal protein S4
2107	 62.52	0	2212779..2213840	-	353	99081948	-	TM1040_2108	-	hypothetical protein
2108	 62.53	0	2213973..2214914	-	313	99081949	-	TM1040_2109	-	hypothetical protein
2109	 60.95	0	2215089..2215490	-	133	99081950	-	TM1040_2110	-	rhodanese-like protein
2110	 64.51	+1	2215682..2216980	+	432	99081951	-	TM1040_2111	-	L-pipecolate dehydrogenase
60.41	MEAN

3.16	STD DEV




Last Updated: Dec 04, 2008
      
Funding for this work was provided by the Peter Wall Institute for Advanced Studies. This service is hosted by the Brinkman Laboratory of the Department of Molecular Biology and Biochemistry at Simon Fraser University.