version 1.0
Silicibacter sp. TM1040, complete genome - 1..3200938 3030 proteins Pos %G+C SD Location Strand Length PID Gene Synonym Code Product 1996 58.80 0 2101188..2102966 + 592 99081837 - TM1040_1997 - periplasmic sensor signal transduction histidine kinase 1997 57.45 0 2102968..2103390 + 140 99081838 - TM1040_1998 - response regulator receiver protein 1998 60.35 0 2103528..2103923 + 131 99081839 - TM1040_1999 - hypothetical protein 1999 62.70 0 2103846..2105762 - 638 99081840 - TM1040_2000 - twin-arginine translocation pathway signal 2000 57.33 0 2106141..2106440 + 99 99081841 - TM1040_2001 - hypothetical protein 2001 62.08 0 2106428..2108020 + 530 99081842 - TM1040_2002 - methyl-accepting chemotaxis sensory transducer 2002 62.17 0 2108344..2109321 + 325 99081843 - TM1040_2003 - 6-phosphogluconate dehydrogenase, NAD-binding 2003 64.29 +1 2109545..2110426 + 293 99081844 - TM1040_2004 - LysR family transcriptional regulator 2004 63.97 +1 2110423..2111313 - 296 99081845 - TM1040_2005 - LysR family transcriptional regulator 2005 59.44 0 2111425..2112573 + 382 99081846 - TM1040_2006 - gamma-butyrobetaine,2-oxoglutarate dioxygenase 2006 64.20 +1 2112570..2113298 + 242 99081847 - TM1040_2007 - hypothetical protein 2007 63.86 +1 2113464..2113961 - 165 99081848 - TM1040_2008 - HxlR family transcriptional regulator 2008 65.96 +1 2114021..2114866 + 281 99081849 - TM1040_2009 - dienelactone hydrolase family protein 2009 60.00 0 2114985..2116049 - 354 99081850 - TM1040_2010 - histidine kinase 2010 62.13 0 2116316..2116756 + 146 99081851 - TM1040_2011 - hypothetical protein 2011 47.88 -2 2116783..2117112 + 109 99081852 - TM1040_2012 - hypothetical protein 2012 55.83 -1 2117215..2117454 - 79 99081853 - TM1040_2013 - hypothetical protein 2013 61.31 0 2117561..2118064 + 167 99081854 - TM1040_2014 - cell division protein MraZ 2014 64.85 +1 2118068..2119057 + 329 99081855 - TM1040_2015 - methyltransferase 2015 61.78 0 2119057..2119404 + 115 99081856 - TM1040_2016 - hypothetical protein 2016 63.64 +1 2119401..2121182 + 593 99081857 - TM1040_2017 - peptidoglycan glycosyltransferase 2017 66.40 +1 2121197..2122681 + 494 99081858 murE TM1040_2018 - UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase 2018 66.81 +2 2122678..2124069 + 463 99081859 - TM1040_2019 - UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase 2019 60.30 0 2124111..2125193 + 360 99081860 - TM1040_2020 - phospho-N-acetylmuramoyl-pentapeptide-transferase 2020 57.45 0 2125506..2126579 - 357 99081861 - TM1040_2021 - hypothetical protein 2021 66.67 +1 2126599..2127684 - 361 99081862 - TM1040_2022 - putative Mrp (multidrug resistance-associated proteins) family protein 2022 59.01 0 2128003..2128224 + 73 99081863 - TM1040_2023 - hypothetical protein 2023 61.96 0 2128764..2131208 - 814 99081864 - TM1040_2024 - ATP-dependent DNA helicase Rep 2024 61.18 0 2131376..2131885 + 169 99081865 - TM1040_2025 - BLUF domain-containing protein 2025 66.32 +1 2132061..2133230 + 389 99081866 - TM1040_2026 - L-lactate dehydrogenase (cytochrome) 2026 62.76 0 2133373..2133807 - 144 99081867 - TM1040_2027 - BLUF domain-containing protein 2027 62.28 0 2134246..2137686 + 1146 99081868 - TM1040_2028 - pyruvate carboxylase 2028 53.80 -2 2137758..2138666 + 302 99081869 - TM1040_2029 - hypothetical protein 2029 61.73 0 2138667..2139152 - 161 99081870 - TM1040_2030 - hypothetical protein 2030 62.01 0 2140200..2141552 + 450 99081871 - TM1040_2031 - aminotransferase 2031 51.67 -2 2141699..2141938 - 79 99081872 - TM1040_2032 - AsnC family transcriptional regulator 2032 63.10 0 2142137..2142724 + 195 99081873 hisB TM1040_2033 - imidazoleglycerol-phosphate dehydratase 2033 61.50 0 2142831..2143469 + 212 99081874 hisH TM1040_2034 - imidazole glycerol phosphate synthase subunit HisH 2034 67.08 +2 2143723..2144454 - 243 99081875 - TM1040_2035 - AraC family transcriptional regulator 2035 60.71 0 2144634..2145170 + 178 99081876 - TM1040_2036 - redoxin 2036 59.52 0 2145288..2145539 + 83 99081877 - TM1040_2037 - hypothetical protein 2037 59.49 0 2145590..2145979 - 129 99081878 - TM1040_2038 - hypothetical protein 2038 63.07 0 2146291..2147013 + 240 99081879 - TM1040_2039 - 1-(5-phosphoribosyl)-5-[(5-phosphoribosylamino)methylideneamino] imidazole-4-carboxamide isomerase 2039 60.57 0 2147329..2147820 + 163 99081880 - TM1040_2040 - hypothetical protein 2040 62.73 0 2147963..2148724 + 253 99081881 - TM1040_2041 - imidazole glycerol phosphate synthase subunit HisF 2041 59.75 0 2148721..2149038 + 105 99081882 hisE TM1040_2042 - phosphoribosyl-ATP pyrophosphatase 2042 61.43 0 2149095..2150258 - 387 99081883 - TM1040_2043 - hypothetical protein 2043 61.08 0 2150402..2150866 - 154 99081884 - TM1040_2044 - 7-cyano-7-deazaguanine reductase 2044 65.11 +1 2150883..2151590 - 235 99081885 - TM1040_2045 - radical SAM family protein 2045 58.19 0 2151587..2151940 - 117 99081886 - TM1040_2046 - putative 6-pyruvoyl tetrahydropterin synthase 2046 63.25 0 2151940..2152641 - 233 99081887 - TM1040_2047 - ExsB 2047 56.67 -1 2152684..2152923 + 79 99081888 - TM1040_2048 - hypothetical protein 2048 59.19 0 2153152..2153940 + 262 99081889 - TM1040_2049 - RNA methyltransferase TrmH, group 3 2049 57.02 -1 2154013..2154354 + 113 99081890 - TM1040_2050 - hypothetical protein 2050 64.60 +1 2154527..2155009 + 160 99081891 - TM1040_2051 - hypothetical protein 2051 60.22 0 2155337..2155801 + 154 99081892 - TM1040_2052 - CoA-binding 2052 62.06 0 2155876..2156439 - 187 99081893 - TM1040_2053 - 3-dehydroquinate dehydratase 2053 61.85 0 2156958..2158784 + 608 99081894 - TM1040_2054 - thiamine biosynthesis protein ThiC 2054 66.02 +1 2158951..2159724 - 257 99081895 - TM1040_2055 - hypothetical protein 2055 65.50 +1 2159766..2160791 - 341 99081896 - TM1040_2056 - allophanate hydrolase subunit 2 2056 67.06 +2 2160788..2161558 - 256 99081897 - TM1040_2057 - allophanate hydrolase subunit 1 2057 65.36 +1 2161695..2162609 + 304 99081898 - TM1040_2058 - LysR family transcriptional regulator 2058 58.18 0 2162703..2163857 + 384 99081899 - TM1040_2059 - Rieske (2Fe-2S) region 2059 62.59 0 2163854..2164123 + 89 99081900 - TM1040_2060 - hypothetical protein 2060 63.63 +1 2164175..2165095 - 306 99081901 - TM1040_2061 - LysR family transcriptional regulator 2061 59.57 0 2165213..2165494 + 93 99081902 - TM1040_2062 - hypothetical protein 2062 61.46 0 2165626..2168046 + 806 99081903 - TM1040_2063 - FAD dependent oxidoreductase 2063 65.94 +1 2168043..2169287 - 414 99081904 - TM1040_2064 - FAD dependent oxidoreductase 2064 63.82 +1 2169390..2169740 - 116 99081905 - TM1040_2065 - endoribonuclease L-PSP 2065 63.46 0 2169776..2170804 - 342 99081906 - TM1040_2066 - histone deacetylase superfamily protein 2066 59.98 0 2170824..2172110 - 428 99081907 - TM1040_2067 - TRAP dicarboxylate transporter- DctM subunit 2067 57.27 0 2172115..2172678 - 187 99081908 - TM1040_2068 - hypothetical protein 2068 58.68 0 2172766..2173767 - 333 99081909 - TM1040_2069 - TRAP dicarboxylate transporter- DctP subunit 2069 61.99 0 2174017..2175000 + 327 99081910 - TM1040_2070 - LysR family transcriptional regulator 2070 62.92 0 2175116..2176048 + 310 99081911 - TM1040_2071 - FMN adenylyltransferase / riboflavin kinase 2071 61.57 0 2176058..2176528 + 156 99081912 - TM1040_2072 - hypothetical protein 2072 66.55 +1 2176578..2177414 - 278 99081913 - TM1040_2073 - alpha/beta hydrolase fold 2073 62.28 0 2177411..2178025 - 204 99081914 - TM1040_2074 - DSBA oxidoreductase 2074 60.22 0 2178130..2179152 + 340 99081915 - TM1040_2075 - ribose-phosphate pyrophosphokinase 2075 53.65 -2 2179542..2180870 + 442 99081916 - TM1040_2076 - dTDP-4-dehydrorhamnose reductase 2076 55.70 -1 2180867..2181340 + 157 99081917 - TM1040_2077 - hypothetical protein 2077 61.34 0 2181427..2182290 + 287 99081918 - TM1040_2078 - hypothetical protein 2078 59.04 0 2182353..2183846 - 497 99081919 - TM1040_2079 - hypothetical protein 2079 66.54 +1 2183985..2186429 - 814 99081920 - TM1040_2080 - heavy metal translocating P-type ATPase 2080 59.89 0 2186594..2186947 - 117 99081921 - TM1040_2081 - MerR family transcriptional regulator 2081 58.05 0 2187014..2187454 + 146 99081922 - TM1040_2082 - hypothetical protein 2082 54.67 -1 2187810..2188334 - 174 99081923 - TM1040_2083 - hypothetical protein 2083 60.22 0 2188344..2188700 - 118 99081924 - TM1040_2084 - hypothetical protein 2084 63.53 0 2188825..2189238 - 137 99081925 - TM1040_2085 - F0F1 ATP synthase subunit epsilon 2085 60.00 0 2189250..2190674 - 474 99081926 - TM1040_2086 - F0F1 ATP synthase subunit beta 2086 61.87 0 2190695..2191570 - 291 99081927 - TM1040_2087 - F0F1 ATP synthase subunit gamma 2087 60.12 0 2191586..2193127 - 513 99081928 - TM1040_2088 - F0F1 ATP synthase subunit alpha 2088 59.79 0 2193128..2193781 - 217 99081929 - TM1040_2089 - ATP synthase F1, delta subunit 2089 64.79 +1 2194104..2194850 - 248 99081930 - TM1040_2090 - hypothetical protein 2090 59.56 0 2194905..2195720 + 271 99081931 - TM1040_2091 - hydroxyacylglutathione hydrolase 2091 61.29 0 2195880..2198258 + 792 99081932 - TM1040_2092 - ATP-dependent Clp protease ATP-binding subunit clpA 2092 58.79 0 2198470..2199066 - 198 99081933 - TM1040_2093 - hypothetical protein 2093 58.91 0 2199187..2199534 - 115 99081934 - TM1040_2094 - hypothetical protein 2094 63.14 0 2199768..2202122 - 784 99081935 - TM1040_2095 - hypothetical protein 2095 61.07 0 2202126..2203304 - 392 99081936 - TM1040_2096 - hypothetical protein 60.41 MEAN 3.16 STD DEV
Last Updated: Dec 04, 2008
Funding for this work was provided by the Peter Wall Institute for Advanced Studies. This service is hosted by the Brinkman Laboratory of the Department of Molecular Biology and Biochemistry at Simon Fraser University.
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