version 1.0
Silicibacter sp. TM1040, complete genome - 1..3200938 3030 proteins Pos %G+C SD Location Strand Length PID Gene Synonym Code Product 1945 64.81 +1 2048352..2049860 - 502 99081786 - TM1040_1945 - exodeoxyribonuclease VII large subunit 1946 62.87 0 2050013..2051275 + 420 99081787 - TM1040_1946 - phosphoribosylamine--glycine ligase 1947 64.91 +1 2051746..2052543 - 265 99081788 - TM1040_1948 - integrins alpha chain 1948 56.74 -1 2052543..2052935 - 130 99081789 - TM1040_1949 - ferredoxin 1949 66.67 +1 2053273..2053719 + 148 99081790 - TM1040_1950 - peptidoglycan binding domain-containing protein 1950 64.13 +1 2053848..2054516 + 222 99081791 - TM1040_1951 - Crp/FNR family transcriptional regulator 1951 59.75 0 2055091..2056218 + 375 99081792 - TM1040_1952 - tetratricopeptide TPR_2 1952 62.53 0 2056616..2058115 - 499 99081793 - TM1040_1953 - peptidase S1C, Do 1953 58.62 0 2058558..2059079 + 173 99081794 - TM1040_1954 - hypothetical protein 1954 61.36 0 2059189..2060073 - 294 99081795 - TM1040_1955 - HflC protein 1955 62.20 0 2060073..2061236 - 387 99081796 - TM1040_1956 - HflK protein 1956 60.32 0 2061345..2062700 - 451 99081797 - TM1040_1957 - NADPH-glutathione reductase 1957 57.14 -1 2062849..2063478 - 209 99081798 - TM1040_1958 - hypothetical protein 1958 58.50 0 2063653..2064093 + 146 99081799 - TM1040_1959 - transmembrane pair 1959 61.85 0 2064158..2064946 - 262 99081800 - TM1040_1960 - ribose-5-phosphate isomerase 1960 63.28 0 2065279..2065986 + 235 99081801 - TM1040_1961 - glutathione S-transferase-like 1961 63.83 +1 2065987..2067360 + 457 99081802 - TM1040_1962 - L-serine ammonia-lyase / 2-hydroxymethylglutarate dehydratase 1962 65.45 +1 2067414..2067986 - 190 99081803 - TM1040_1963 - TetR family transcriptional regulator 1963 65.53 +1 2068068..2068943 + 291 99081804 - TM1040_1964 - hypothetical protein 1964 62.36 0 2069025..2069999 + 324 99081805 - TM1040_1965 - hypothetical protein 1965 63.54 0 2069965..2070636 - 223 99081806 - TM1040_1966 - thiamine pyrophosphokinase 1966 65.67 +1 2070774..2072972 + 732 99081807 - TM1040_1967 - putative CheA signal transduction histidine kinases 1967 58.54 0 2073325..2073570 - 81 99081808 - TM1040_1968 - hypothetical protein 1968 63.09 0 2073570..2074883 - 437 99081809 - TM1040_1969 - adenylosuccinate synthetase 1969 63.09 0 2075153..2075515 - 120 99081810 - TM1040_1970 - hypothetical protein 1970 64.26 +1 2075512..2076216 - 234 99081811 - TM1040_1971 - nitrile hydratase 1971 63.00 0 2076213..2076839 - 208 99081812 - TM1040_1972 - nitrile hydratase, alpha subunit 1972 60.64 0 2077611..2079254 + 547 99081813 - TM1040_1973 - CTP synthetase 1973 57.64 0 2079396..2079827 + 143 99081814 - TM1040_1974 - hypothetical protein 1974 63.66 +1 2079901..2080233 + 110 99081815 - TM1040_1975 - hypothetical protein 1975 60.24 0 2080346..2081248 + 300 99081816 - TM1040_1976 - fructose-1,6-bisphosphate aldolase 1976 60.70 0 2081321..2082778 - 485 99081817 - TM1040_1977 - methyl-accepting chemotaxis sensory transducer 1977 53.53 -2 2082931..2083242 + 103 99081818 - TM1040_1978 - hypothetical protein 1978 59.89 0 2083197..2083919 - 240 99081819 - TM1040_1979 - fatty acid hydroxylase 1979 65.04 +1 2083971..2084768 - 265 99081820 - TM1040_1980 - enoyl-CoA hydratase 1980 63.61 +1 2084941..2086053 + 370 99081821 - TM1040_1981 - histidinol-phosphate aminotransferase 1981 56.54 -1 2086159..2086395 + 78 99081822 - TM1040_1982 - hypothetical protein 1982 64.44 +1 2086629..2087843 - 404 99081823 - TM1040_1983 - aminotransferase, class V 1983 62.53 0 2088076..2089935 + 619 99081824 - TM1040_1984 - ABC transporter related 1984 63.32 0 2090043..2090789 + 248 99081825 - TM1040_1985 - glycine cleavage T protein (aminomethyl transferase) 1985 61.00 0 2090902..2091483 + 193 99081826 - TM1040_1986 - hypothetical protein 1986 59.75 0 2091657..2092220 - 187 99081827 - TM1040_1987 - elongation factor P 1987 59.75 0 2092447..2092764 + 105 99081828 - TM1040_1988 - hypothetical protein 1988 64.73 +1 2092984..2094432 + 482 99081829 - TM1040_1989 - cobyric acid synthase 1989 65.52 +1 2094770..2096077 - 435 99081830 - TM1040_1990 - hypothetical protein 1990 63.29 0 2096154..2097575 - 473 99081831 - TM1040_1991 - Type I secretion outer membrane protein, TolC 1991 61.93 0 2097720..2098373 - 217 99081832 - TM1040_1992 - protein-L-isoaspartate(D-aspartate) O-methyltransferase 1992 57.28 0 2098899..2099207 - 102 99081833 - TM1040_1993 - TraR/DksA family transcriptional regulator 1993 54.55 -1 2099466..2099696 + 76 99081834 - TM1040_1994 - entericidin EcnAB 1994 59.04 0 2099764..2100681 - 305 99081835 - TM1040_1995 - putative PAS/PAC sensor protein 1995 56.30 -1 2100825..2101094 - 89 99081836 - TM1040_1996 - hypothetical protein 1996 58.80 0 2101188..2102966 + 592 99081837 - TM1040_1997 - periplasmic sensor signal transduction histidine kinase 1997 57.45 0 2102968..2103390 + 140 99081838 - TM1040_1998 - response regulator receiver protein 1998 60.35 0 2103528..2103923 + 131 99081839 - TM1040_1999 - hypothetical protein 1999 62.70 0 2103846..2105762 - 638 99081840 - TM1040_2000 - twin-arginine translocation pathway signal 2000 57.33 0 2106141..2106440 + 99 99081841 - TM1040_2001 - hypothetical protein 2001 62.08 0 2106428..2108020 + 530 99081842 - TM1040_2002 - methyl-accepting chemotaxis sensory transducer 2002 62.17 0 2108344..2109321 + 325 99081843 - TM1040_2003 - 6-phosphogluconate dehydrogenase, NAD-binding 2003 64.29 +1 2109545..2110426 + 293 99081844 - TM1040_2004 - LysR family transcriptional regulator 2004 63.97 +1 2110423..2111313 - 296 99081845 - TM1040_2005 - LysR family transcriptional regulator 2005 59.44 0 2111425..2112573 + 382 99081846 - TM1040_2006 - gamma-butyrobetaine,2-oxoglutarate dioxygenase 2006 64.20 +1 2112570..2113298 + 242 99081847 - TM1040_2007 - hypothetical protein 2007 63.86 +1 2113464..2113961 - 165 99081848 - TM1040_2008 - HxlR family transcriptional regulator 2008 65.96 +1 2114021..2114866 + 281 99081849 - TM1040_2009 - dienelactone hydrolase family protein 2009 60.00 0 2114985..2116049 - 354 99081850 - TM1040_2010 - histidine kinase 2010 62.13 0 2116316..2116756 + 146 99081851 - TM1040_2011 - hypothetical protein 2011 47.88 -2 2116783..2117112 + 109 99081852 - TM1040_2012 - hypothetical protein 2012 55.83 -1 2117215..2117454 - 79 99081853 - TM1040_2013 - hypothetical protein 2013 61.31 0 2117561..2118064 + 167 99081854 - TM1040_2014 - cell division protein MraZ 2014 64.85 +1 2118068..2119057 + 329 99081855 - TM1040_2015 - methyltransferase 2015 61.78 0 2119057..2119404 + 115 99081856 - TM1040_2016 - hypothetical protein 2016 63.64 +1 2119401..2121182 + 593 99081857 - TM1040_2017 - peptidoglycan glycosyltransferase 2017 66.40 +1 2121197..2122681 + 494 99081858 murE TM1040_2018 - UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase 2018 66.81 +2 2122678..2124069 + 463 99081859 - TM1040_2019 - UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase 2019 60.30 0 2124111..2125193 + 360 99081860 - TM1040_2020 - phospho-N-acetylmuramoyl-pentapeptide-transferase 2020 57.45 0 2125506..2126579 - 357 99081861 - TM1040_2021 - hypothetical protein 2021 66.67 +1 2126599..2127684 - 361 99081862 - TM1040_2022 - putative Mrp (multidrug resistance-associated proteins) family protein 2022 59.01 0 2128003..2128224 + 73 99081863 - TM1040_2023 - hypothetical protein 2023 61.96 0 2128764..2131208 - 814 99081864 - TM1040_2024 - ATP-dependent DNA helicase Rep 2024 61.18 0 2131376..2131885 + 169 99081865 - TM1040_2025 - BLUF domain-containing protein 2025 66.32 +1 2132061..2133230 + 389 99081866 - TM1040_2026 - L-lactate dehydrogenase (cytochrome) 2026 62.76 0 2133373..2133807 - 144 99081867 - TM1040_2027 - BLUF domain-containing protein 2027 62.28 0 2134246..2137686 + 1146 99081868 - TM1040_2028 - pyruvate carboxylase 2028 53.80 -2 2137758..2138666 + 302 99081869 - TM1040_2029 - hypothetical protein 2029 61.73 0 2138667..2139152 - 161 99081870 - TM1040_2030 - hypothetical protein 2030 62.01 0 2140200..2141552 + 450 99081871 - TM1040_2031 - aminotransferase 2031 51.67 -2 2141699..2141938 - 79 99081872 - TM1040_2032 - AsnC family transcriptional regulator 2032 63.10 0 2142137..2142724 + 195 99081873 hisB TM1040_2033 - imidazoleglycerol-phosphate dehydratase 2033 61.50 0 2142831..2143469 + 212 99081874 hisH TM1040_2034 - imidazole glycerol phosphate synthase subunit HisH 2034 67.08 +2 2143723..2144454 - 243 99081875 - TM1040_2035 - AraC family transcriptional regulator 2035 60.71 0 2144634..2145170 + 178 99081876 - TM1040_2036 - redoxin 2036 59.52 0 2145288..2145539 + 83 99081877 - TM1040_2037 - hypothetical protein 2037 59.49 0 2145590..2145979 - 129 99081878 - TM1040_2038 - hypothetical protein 2038 63.07 0 2146291..2147013 + 240 99081879 - TM1040_2039 - 1-(5-phosphoribosyl)-5-[(5-phosphoribosylamino)methylideneamino] imidazole-4-carboxamide isomerase 2039 60.57 0 2147329..2147820 + 163 99081880 - TM1040_2040 - hypothetical protein 2040 62.73 0 2147963..2148724 + 253 99081881 - TM1040_2041 - imidazole glycerol phosphate synthase subunit HisF 2041 59.75 0 2148721..2149038 + 105 99081882 hisE TM1040_2042 - phosphoribosyl-ATP pyrophosphatase 2042 61.43 0 2149095..2150258 - 387 99081883 - TM1040_2043 - hypothetical protein 2043 61.08 0 2150402..2150866 - 154 99081884 - TM1040_2044 - 7-cyano-7-deazaguanine reductase 2044 65.11 +1 2150883..2151590 - 235 99081885 - TM1040_2045 - radical SAM family protein 60.41 MEAN 3.16 STD DEV
Last Updated: Dec 04, 2008
Funding for this work was provided by the Peter Wall Institute for Advanced Studies. This service is hosted by the Brinkman Laboratory of the Department of Molecular Biology and Biochemistry at Simon Fraser University.
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1.0