version 1.0
Silicibacter sp. TM1040, complete genome - 1..3200938 3030 proteins Pos %G+C SD Location Strand Length PID Gene Synonym Code Product 1852 62.46 0 1952289..1953644 - 451 99081693 - TM1040_1852 - prolyl-tRNA synthetase 1853 48.35 -2 1953837..1954169 - 110 99081694 - TM1040_1853 - hypothetical protein 1854 62.24 0 1954506..1956245 + 579 99081695 - TM1040_1854 - GAF sensor hybrid histidine kinase 1855 62.90 0 1956344..1957486 + 380 99081696 - TM1040_1855 - hypothetical protein 1856 65.04 +1 1957540..1958217 + 225 99081697 - TM1040_1856 - chromosomal replication initiator, DnaA 1857 64.60 +1 1958393..1960039 + 548 99081698 - TM1040_1857 - Ppx/GppA phosphatase 1858 65.31 +1 1960107..1960547 - 146 99081699 - TM1040_1858 - hypothetical protein 1859 63.77 +1 1960571..1961605 - 344 99081700 - TM1040_1859 - endonuclease/exonuclease/phosphatase 1860 64.97 +1 1961586..1962293 - 235 99081701 - TM1040_1860 - heat shock protein DnaJ-like 1861 64.42 +1 1962303..1962836 - 177 99081702 - TM1040_1861 - GCN5-related N-acetyltransferase 1862 68.86 +2 1962836..1963474 - 212 99081703 - TM1040_1862 - hypothetical protein 1863 63.45 0 1963667..1964164 + 165 99081704 - TM1040_1863 - glyoxalase/bleomycin resistance protein/dioxygenase 1864 64.71 +1 1964494..1964646 - 50 99081705 - TM1040_1864 - hypothetical protein 1865 61.73 0 1964662..1966647 - 661 99081706 - TM1040_1865 - methylmalonyl-CoA mutase 1866 64.99 +1 1966754..1967707 - 317 99081707 - TM1040_1866 - hypothetical protein 1867 64.38 +1 1967864..1968388 + 174 99081708 - TM1040_1867 - hypothetical protein 1868 60.73 0 1968507..1969112 - 201 99081709 - TM1040_1868 - hypothetical protein 1869 61.64 0 1969271..1971301 - 676 99081710 - TM1040_1869 - carbamoyl-phosphate synthase L chain, ATP-binding 1870 65.20 +1 1971445..1971648 - 67 99081711 - TM1040_1870 - putative lipoprotein 1871 60.08 0 1971641..1971898 - 85 99081712 - TM1040_1871 - hypothetical protein 1872 61.49 0 1972185..1972532 - 115 99081713 - TM1040_1872 - hypothetical protein 1873 58.33 0 1972602..1972745 - 47 99081714 - TM1040_1873 - putative lipoprotein 1874 61.90 0 1972960..1973274 - 104 99081715 - TM1040_1874 - hypothetical protein 1875 69.54 +2 1973883..1974230 - 115 99081716 - TM1040_1875 - hypothetical protein 1876 55.91 -1 1974319..1974792 - 157 99081717 - TM1040_1876 - hypothetical protein 1877 60.14 0 1974839..1976371 - 510 99081718 - TM1040_1877 - propionyl-CoA carboxylase 1878 62.06 0 1976745..1977938 + 397 99081719 - TM1040_1878 - Bcr/CflA subfamily drug resistance transporter 1879 62.47 0 1978118..1979593 + 491 99081720 - TM1040_1879 - XRE family transcriptional regulator 1880 57.92 0 1979648..1979887 - 79 99081721 - TM1040_1880 - hypothetical protein 1881 50.61 -2 1980254..1980664 + 136 99081722 - TM1040_1881 - hypothetical protein 1882 62.86 0 1980763..1982418 - 551 99081723 - TM1040_1882 - choline dehydrogenase 1883 60.91 0 1982575..1984032 - 485 99081724 - TM1040_1883 - betaine aldehyde dehydrogenase 1884 56.49 -1 1984236..1985444 - 402 99081725 - TM1040_1884 - hypothetical protein 1885 61.25 0 1985642..1986232 + 196 99081726 - TM1040_1885 - TetR family transcriptional regulator 1886 63.31 0 1986308..1987381 - 357 99081727 - TM1040_1886 - integral membrane protein-like 1887 62.38 0 1987499..1988431 - 310 99081728 - TM1040_1887 - hypothetical protein 1888 66.67 +1 1988725..1990362 + 545 99081729 - TM1040_1888 - ABC transporter related 1889 64.12 +1 1990311..1991252 - 313 99081730 - TM1040_1889 - Pirin-like 1890 65.40 +1 1991345..1991974 - 209 99081731 - TM1040_1890 - lysine exporter protein LysE/YggA 1891 65.58 +1 1992084..1993004 + 306 99081732 - TM1040_1891 - chromosome replication initiation inhibitor protein 1892 63.05 0 1993025..1993882 + 285 99081733 - TM1040_1892 - hypothetical protein 1893 59.38 0 1994121..1994861 - 246 161899028 - TM1040_1893 - hypothetical protein 1894 60.61 0 1994821..1995183 - 120 99081735 - TM1040_1894 - hypothetical protein 1895 64.02 +1 1995323..1997098 + 591 99081736 - TM1040_1895 - TrkA-C 1896 65.77 +1 1997303..1998976 + 557 99081737 - TM1040_1896 - putative FAD-binding dehydrogenase 1897 58.65 0 1999008..1999481 + 157 99081738 - TM1040_1897 - hypothetical protein 1898 59.78 0 1999575..2000039 - 154 99081739 - TM1040_1898 - twin-arginine translocation pathway signal 1899 62.45 0 2000157..2001935 - 592 99081740 - TM1040_1899 - TrkA-C 1900 64.09 +1 2002217..2003110 + 297 99081741 - TM1040_1900 - beta-lactamase 1901 61.13 0 2003515..2004327 - 270 99081742 - TM1040_1901 - hypothetical protein 1902 59.88 0 2004704..2005543 + 279 99081743 - TM1040_1902 - hypothetical protein 1903 65.99 +1 2005708..2006295 - 195 99081744 - TM1040_1903 - 5-formyltetrahydrofolate cyclo-ligase 1904 61.27 0 2006318..2007706 - 462 99081745 - TM1040_1904 - magnesium transporter 1905 64.50 +1 2007845..2009134 + 429 99081746 - TM1040_1905 - guanine deaminase 1906 64.88 +1 2009233..2010573 - 446 99081747 - TM1040_1906 - hydroxydechloroatrazine ethylaminohydrolase 1907 63.14 0 2010784..2011578 - 264 99081748 - TM1040_1907 - histidinol-phosphate phosphatase, putative, inositol monophosphatase 1908 62.20 0 2011553..2011843 - 96 99081749 - TM1040_1908 - hypothetical protein 1909 55.38 -1 2011866..2012237 - 123 99081750 - TM1040_1909 - XRE family transcriptional regulator 1910 62.15 0 2012602..2013576 + 324 99081751 - TM1040_1910 - zinc-binding alcohol dehydrogenase 1911 61.76 0 2013545..2014462 - 305 99081752 - TM1040_1911 - LysR family transcriptional regulator 1912 61.97 0 2014585..2014797 + 70 99081753 - TM1040_1912 - hypothetical protein 1913 59.36 0 2015026..2015805 + 259 99081754 - TM1040_1913 - hypothetical protein 1914 62.59 0 2015909..2016448 + 179 99081755 - TM1040_1914 - GCN5-related N-acetyltransferase 1915 54.17 -1 2016984..2017151 - 55 99081756 rpmG TM1040_1915 - 50S ribosomal protein L33 1916 66.52 +1 2017873..2018532 - 219 99081757 - TM1040_1916 - N-acetylmuramyl-L-alanine amidase, negative regulator of AmpC, AmpD 1917 66.54 +1 2018542..2019306 - 254 99081758 - TM1040_1917 - hypothetical protein 1918 64.38 +1 2019347..2020834 - 495 99081759 gatA TM1040_1918 - aspartyl/glutamyl-tRNA amidotransferase subunit A 1919 59.38 0 2020838..2021125 - 95 99081760 - TM1040_1919 - aspartyl/glutamyl-tRNA(Asn/Gln) amidotransferase subunit C 1920 57.29 0 2021537..2022229 + 230 99081761 - TM1040_1920 - beta-lactamase-like 1921 61.79 0 2022229..2023398 + 389 99081762 - TM1040_1921 - peptidase M24 1922 61.69 0 2023619..2024221 - 200 99081763 - TM1040_1922 - DNA-3-methyladenine glycosylase I 1923 60.20 0 2024218..2024511 - 97 99081764 - TM1040_1923 - YCII-related 1924 61.58 0 2024543..2025112 - 189 99081765 - TM1040_1924 - TetR family transcriptional regulator 1925 64.61 +1 2025310..2025552 - 80 99081766 - TM1040_1925 - hypothetical protein 1926 67.13 +2 2025549..2025983 - 144 99081767 - TM1040_1926 - CMP/dCMP deaminase, zinc-binding 1927 64.78 +1 2026097..2027365 + 422 99081768 - TM1040_1927 - pseudouridine synthase, Rsu 1928 65.35 +1 2027532..2028440 + 302 99081769 - TM1040_1928 - hypothetical protein 1929 61.04 0 2028463..2029653 + 396 99081770 - TM1040_1929 - toxic anion resistance 1930 63.31 0 2029664..2030617 + 317 99081771 - TM1040_1930 - putative lipoprotein 1931 57.75 0 2030640..2031323 - 227 99081772 - TM1040_1931 - glutathione S-transferase-like 1932 60.89 0 2031373..2033085 - 570 99081773 - TM1040_1932 - acetolactate synthase, large subunit 1933 59.30 0 2033657..2035897 - 746 99081774 - TM1040_1933 - phosphoenolpyruvate-protein phosphotransferase PtsP 1934 59.81 0 2036243..2037481 - 412 99081775 - TM1040_1934 - aspartate kinase 1935 58.80 0 2037616..2039064 - 482 99081776 - TM1040_1935 - cation transporter 1936 65.76 +1 2039112..2039879 - 255 99081777 - TM1040_1936 - hypothetical protein 1937 59.33 0 2040105..2041208 - 367 99081778 - TM1040_1937 - putative GTP cyclohydrolase 1938 59.76 0 2041410..2042597 - 395 99081779 - TM1040_1938 - O-succinylhomoserine sulfhydrylase 1939 64.65 +1 2043063..2044004 + 313 99081780 - TM1040_1939 - hypothetical protein 1940 57.23 -1 2044201..2044836 - 211 99081781 - TM1040_1940 - intracellular septation protein A 1941 60.51 0 2044881..2045789 - 302 99081782 - TM1040_1941 - hypothetical protein 1942 65.20 +1 2045848..2047008 - 386 99081783 - TM1040_1942 - signal recognition particle-docking protein FtsY 1943 61.01 0 2047082..2047735 - 217 99081784 - TM1040_1943 - YhhN-like 1944 60.34 0 2047873..2048283 + 136 99081785 - TM1040_1944 - hypothetical protein 1945 64.81 +1 2048352..2049860 - 502 99081786 - TM1040_1945 - exodeoxyribonuclease VII large subunit 1946 62.87 0 2050013..2051275 + 420 99081787 - TM1040_1946 - phosphoribosylamine--glycine ligase 1947 64.91 +1 2051746..2052543 - 265 99081788 - TM1040_1948 - integrins alpha chain 1948 56.74 -1 2052543..2052935 - 130 99081789 - TM1040_1949 - ferredoxin 1949 66.67 +1 2053273..2053719 + 148 99081790 - TM1040_1950 - peptidoglycan binding domain-containing protein 1950 64.13 +1 2053848..2054516 + 222 99081791 - TM1040_1951 - Crp/FNR family transcriptional regulator 1951 59.75 0 2055091..2056218 + 375 99081792 - TM1040_1952 - tetratricopeptide TPR_2 60.41 MEAN 3.16 STD DEV
Last Updated: Dec 04, 2008
Funding for this work was provided by the Peter Wall Institute for Advanced Studies. This service is hosted by the Brinkman Laboratory of the Department of Molecular Biology and Biochemistry at Simon Fraser University.
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