IslandPathversion 1.0

IslandPath Analysis: Silicibacter sp. TM1040



Each circle in the graphic corresponds to a predicted protein-coding ORF in the genome. Circle colours indicate if an ORF has a higher or lower %G+C than cutoffs you set below --(default is +/- 3.48 of the mean %G+C). Strike lines across the circles represent regions with dinucleotide bias above a pre-determined cutoff. Click on a circle to view a different portion of the table presented below the graph (default is the first 100 ORFs).
A yellow circle indicates its %G+C value is bigger than the high value. A green circle indicates its %G+C value is bigger than the low value and smaller than the high value. A pink circle indicates its %G+C value is smaller than the low value. A strike line across the circles indicates the region has dinucleotide bais above 1 STD DEV. A black verticle bar indicates a transfer RNA gene lies between the two ORFs. A purple verticle bar indicates a ribosomal RNA gene lies between the two ORFs. A deep blue verticle bar indicates both a tRNA and rRNA gene lie between the two ORFs. A black square indicates the dot is annotated as a transposase. A black triangle indicates the dot is annotated as an integrase. Low: High: Mean: 60.41 STD DEV: 3.16
Silicibacter sp. TM1040, complete genome - 1..3200938
3030 proteins
Pos	%G+C	SD	Location	Strand	Length	PID	Gene	Synonym	Code	Product
1588	 61.13	0	1696199..1699753	-	1184	99081429	-	TM1040_1588	-	Outer membrane autotransporter barrel
1589	 58.89	0	1700175..1701434	-	419	99081430	-	TM1040_1589	-	TRAP dicarboxylate transporter- DctM subunit
1590	 59.44	0	1701431..1701970	-	179	99081431	-	TM1040_1590	-	tripartite ATP-independent periplasmic transporter DctQ
1591	 60.04	0	1702034..1703014	-	326	99081432	-	TM1040_1591	-	TRAP dicarboxylate transporter- DctP subunit
1592	 58.69	0	1703050..1703613	-	187	99081433	-	TM1040_1592	-	3-hydroxyanthranilate 3,4-dioxygenase
1593	 60.59	0	1703743..1704630	-	295	99081434	-	TM1040_1593	-	hypothetical protein
1594	 57.86	0	1704640..1705593	-	317	99081435	-	TM1040_1594	-	dihydrodipicolinate synthetase
1595	 64.77	+1	1705772..1706560	+	262	99081436	-	TM1040_1595	-	L-aspartate dehydrogenase
1596	 60.56	0	1706570..1707535	+	321	99081437	-	TM1040_1596	-	LysR family transcriptional regulator
1597	 61.77	0	1707581..1709071	+	496	99081438	-	TM1040_1597	-	succinate semialdehyde dehydrogenase
1598	 60.66	0	1709078..1710358	-	426	99081439	-	TM1040_1598	-	twin-arginine translocation pathway signal
1599	 58.22	0	1710889..1711800	-	303	99081440	-	TM1040_1599	-	hemolysin-type calcium-binding region
1600	 53.77	-2	1712411..1712728	+	105	99081441	-	TM1040_1600	-	hypothetical protein
1601	 47.40	-2	1712755..1713351	-	198	99081442	-	TM1040_1601	-	hypothetical protein
1602	 46.02	-2	1713369..1714235	-	288	99081443	-	TM1040_1602	-	hypothetical protein
1603	 58.65	0	1714470..1714868	-	132	99081444	-	TM1040_1603	-	hypothetical protein
1604	 61.23	0	1714865..1715674	-	269	99081445	-	TM1040_1604	-	hypothetical protein
1605	 62.53	0	1715676..1716110	-	144	99081446	-	TM1040_1605	-	hypothetical protein
1606	 57.91	0	1716107..1716403	-	98	99081447	-	TM1040_1606	-	hypothetical protein
1607	 61.21	0	1716410..1716757	-	115	99081448	-	TM1040_1607	-	hypothetical protein
1608	 61.68	0	1716735..1717235	-	166	99081449	-	TM1040_1608	-	hypothetical protein
1609	 60.78	0	1717238..1718308	-	356	99081450	-	TM1040_1609	-	hypothetical protein
1610	 56.40	-1	1718305..1719249	-	314	99081451	-	TM1040_1610	-	hypothetical protein
1611	 58.62	0	1719249..1723772	-	1507	99081452	-	TM1040_1611	-	hypothetical protein
1612	 60.71	0	1724207..1724542	-	111	99081453	-	TM1040_1612	-	hypothetical protein
1613	 55.11	-1	1724641..1725090	-	149	99081454	-	TM1040_1613	-	hypothetical protein
1614	 58.89	0	1725189..1725638	-	149	99081455	-	TM1040_1614	-	hypothetical protein
1615	 56.49	-1	1725699..1725983	-	94	99081456	-	TM1040_1615	-	hypothetical protein
1616	 60.73	0	1726025..1726378	-	117	99081457	-	TM1040_1616	-	hypothetical protein
1617	 58.11	0	1726378..1726833	-	151	99081458	-	TM1040_1617	-	hypothetical protein
1618	 57.67	0	1726834..1727211	+	125	99081459	-	TM1040_1618	-	hypothetical protein
1619	 58.42	0	1727252..1727833	-	193	99081460	-	TM1040_1619	-	phiE125 gp8 hypothetical protein
1620	 57.58	0	1727837..1728298	-	153	99081461	-	TM1040_1620	-	hypothetical protein
1621	 64.07	+1	1728295..1728756	-	153	99081462	-	TM1040_1621	-	hypothetical protein
1622	 61.89	0	1728820..1730139	-	439	99081463	-	TM1040_1622	-	hypothetical protein
1623	 64.35	+1	1730142..1731089	-	315	99081464	-	TM1040_1623	-	serine peptidase
1624	 58.28	0	1731086..1732372	-	428	99081465	-	TM1040_1624	-	Phage portal protein, HK97
1625	 60.02	0	1732375..1734075	-	566	99081466	-	TM1040_1625	-	phage terminase
1626	 57.69	0	1734086..1734631	-	181	99081467	-	TM1040_1626	-	hypothetical protein
1627	 56.70	-1	1734735..1735055	+	106	99081468	-	TM1040_1627	-	hypothetical protein
1628	 60.81	0	1735346..1735738	+	130	99081469	-	TM1040_1628	-	hypothetical protein
1629	 60.11	0	1736144..1738018	-	624	99081470	-	TM1040_1629	-	hypothetical protein
1630	 60.99	0	1738048..1738329	-	93	99081471	-	TM1040_1630	-	hypothetical protein
1631	 60.02	0	1738333..1739175	-	280	99081472	-	TM1040_1631	-	hypothetical protein
1632	 61.04	0	1739172..1739651	-	159	99081473	-	TM1040_1632	-	hypothetical protein
1633	 58.16	0	1739641..1740522	-	293	99081474	-	TM1040_1633	-	hypothetical protein
1634	 56.63	-1	1740519..1740797	-	92	99081475	-	TM1040_1634	-	hypothetical protein
1635	 61.22	0	1740964..1741440	-	158	99081476	-	TM1040_1635	-	hypothetical protein
1636	 54.24	-1	1741814..1742167	+	117	99081477	-	TM1040_1636	-	XRE family transcriptional regulator
1637	 51.02	-2	1742333..1743016	+	227	99081478	-	TM1040_1637	-	hypothetical protein
1638	 50.39	-2	1742974..1743864	-	296	99081479	-	TM1040_1638	-	hypothetical protein
1639	 63.37	0	1744087..1744389	+	100	99081480	-	TM1040_1639	-	hypothetical protein
1640	 57.02	-1	1744698..1745402	+	234	99081481	-	TM1040_1640	-	hypothetical protein
1641	 59.10	0	1745594..1745950	+	118	99081482	-	TM1040_1641	-	hypothetical protein
1642	 59.40	0	1745947..1747818	+	623	99081483	-	TM1040_1642	-	ParB-like nuclease
1643	 55.16	-1	1748176..1748427	+	83	99081484	-	TM1040_1643	-	hypothetical protein
1644	 56.61	-1	1748417..1749649	+	410	99081485	-	TM1040_1644	-	hypothetical protein
1645	 63.55	0	1750371..1751012	-	213	99081486	-	TM1040_1645	-	resolvase-like protein
1646	 55.43	-1	1751144..1751659	+	171	99081487	-	TM1040_1646	-	hypothetical protein
1647	 58.39	0	1751638..1752096	-	152	99081488	-	TM1040_1647	-	hypothetical protein
1648	 56.70	-1	1752165..1752485	-	106	99081489	-	TM1040_1648	-	hypothetical protein
1649	 58.65	0	1752567..1752965	-	132	99081490	-	TM1040_1649	-	hypothetical protein
1650	 61.23	0	1752962..1753771	-	269	99081491	-	TM1040_1650	-	hypothetical protein
1651	 61.84	0	1753773..1754207	-	144	99081492	-	TM1040_1651	-	hypothetical protein
1652	 59.30	0	1754204..1754461	-	85	99081493	-	TM1040_1652	-	hypothetical protein
1653	 61.21	0	1754507..1754854	-	115	99081494	-	TM1040_1653	-	hypothetical protein
1654	 58.77	0	1754832..1755464	-	210	99081495	-	TM1040_1654	-	hypothetical protein
1655	 50.60	-2	1755461..1756456	-	331	99081496	-	TM1040_1655	-	hypothetical protein
1656	 56.51	-1	1756975..1757919	-	314	99081497	-	TM1040_1656	-	hypothetical protein
1657	 58.52	0	1757916..1762442	-	1508	99081498	-	TM1040_1657	-	hypothetical protein
1658	 50.44	-2	1762471..1762809	+	112	99081499	-	TM1040_1658	-	hypothetical protein
1659	 52.95	-2	1762850..1763731	-	293	99081500	-	TM1040_1659	-	hypothetical protein
1660	 60.47	0	1763994..1764332	-	112	99081501	-	TM1040_1660	-	hypothetical protein
1661	 54.22	-1	1764431..1764880	-	149	99081502	-	TM1040_1661	-	hypothetical protein
1662	 59.11	0	1764979..1765428	-	149	99081503	-	TM1040_1662	-	hypothetical protein
1663	 56.84	-1	1765489..1765773	-	94	99081504	-	TM1040_1663	-	hypothetical protein
1664	 60.46	0	1765815..1766120	-	101	99081505	-	TM1040_1664	-	hypothetical protein
1665	 59.65	0	1766168..1766623	-	151	99081506	-	TM1040_1665	-	hypothetical protein
1666	 61.36	0	1766620..1766958	-	112	99081507	-	TM1040_1666	-	hypothetical protein
1667	 67.36	+2	1766958..1767530	-	190	99081508	-	TM1040_1667	-	phiE125 gp8 hypothetical protein
1668	 62.54	0	1767772..1768983	-	403	99081509	-	TM1040_1668	-	phage major capsid protein, HK97
1669	 61.57	0	1769008..1769694	-	228	99081510	-	TM1040_1669	-	prohead peptidase
1670	 58.91	0	1769678..1770901	-	407	99081511	-	TM1040_1670	-	Phage portal protein, HK97
1671	 59.43	0	1770902..1772683	-	593	99081512	-	TM1040_1671	-	phage terminase
1672	 62.75	0	1772661..1773068	-	135	99081513	-	TM1040_1672	-	hypothetical protein
1673	 58.33	0	1773573..1773896	+	107	99081514	-	TM1040_1673	-	hypothetical protein
1674	 61.40	0	1774102..1774671	-	189	99081515	-	TM1040_1674	-	hypothetical protein
1675	 60.24	0	1774694..1774942	-	82	99081516	-	TM1040_1675	-	hypothetical protein
1676	 58.07	0	1774948..1775424	-	158	99081517	-	TM1040_1676	-	single-strand binding protein
1677	 61.29	0	1775642..1776403	-	253	99081518	-	TM1040_1677	-	hypothetical protein
1678	 62.18	0	1776938..1777294	-	118	99081519	-	TM1040_1678	-	endodeoxyribonuclease RusA
1679	 56.72	-1	1777291..1777863	-	190	99081520	-	TM1040_1679	-	MT-A70
1680	 63.70	+1	1777863..1778165	-	100	99081521	-	TM1040_1680	-	hypothetical protein
1681	 62.16	0	1778403..1778846	-	147	99081522	-	TM1040_1681	-	hypothetical protein
1682	 57.60	0	1779272..1779922	+	216	99081523	-	TM1040_1682	-	hypothetical protein
1683	 49.63	-2	1779945..1780214	+	89	99081524	-	TM1040_1683	-	hypothetical protein
1684	 54.48	-1	1780207..1780608	+	133	99081525	-	TM1040_1684	-	hypothetical protein
1685	 54.45	-1	1780907..1781299	+	130	99081526	-	TM1040_1685	-	hypothetical protein
1686	 59.47	0	1781513..1781776	+	87	99081527	-	TM1040_1686	-	hypothetical protein
1687	 55.42	-1	1781885..1782862	+	325	99081528	-	TM1040_1687	-	hypothetical protein
60.41	MEAN

3.16	STD DEV



Last Updated: Dec 04, 2008

Funding for this work was provided by the Peter Wall Institute for Advanced Studies. This service is hosted by the Brinkman Laboratory of the Department of Molecular Biology and Biochemistry at Simon Fraser University.