version 1.0
Silicibacter sp. TM1040, complete genome - 1..3200938 3030 proteins Pos %G+C SD Location Strand Length PID Gene Synonym Code Product 1534 60.84 0 1639148..1640674 + 508 99081375 mdoG TM1040_1534 - glucan biosynthesis protein G 1535 62.92 0 1640675..1642567 + 630 99081376 - TM1040_1535 - glucosyltransferase MdoH 1536 61.73 0 1642659..1643489 - 276 99081377 - TM1040_1536 - putative polyhydroxybutyrate depolymerase 1537 64.77 +1 1643486..1644013 - 175 99081378 - TM1040_1537 - rhodanese-like protein 1538 60.13 0 1644301..1647162 + 953 99081379 - TM1040_1538 - putative monovalent cation/H+ antiporter subunit A 1539 62.15 0 1647167..1647520 + 117 99081380 - TM1040_1539 - putative monovalent cation/H+ antiporter subunit C 1540 61.31 0 1647517..1649139 + 540 99081381 - TM1040_1540 - putative monovalent cation/H+ antiporter subunit D 1541 59.84 0 1649139..1649636 + 165 99081382 - TM1040_1541 - putative monovalent cation/H+ antiporter subunit E 1542 54.44 -1 1649633..1649902 + 89 99081383 - TM1040_1542 - putative monovalent cation/H+ antiporter subunit F 1543 58.99 0 1649913..1650290 + 125 99081384 - TM1040_1543 - putative monovalent cation/H+ antiporter subunit G 1544 63.25 0 1650329..1652491 + 720 99081385 - TM1040_1544 - AIR synthase related protein-like 1545 61.30 0 1652518..1653561 - 347 99081386 - TM1040_1545 - tRNA 2-selenouridine synthase 1546 61.32 0 1653637..1654122 + 161 99081387 - TM1040_1546 - MarR family transcriptional regulator 1547 62.71 0 1654155..1654457 - 100 99081388 - TM1040_1547 - hypothetical protein 1548 60.47 0 1654635..1656215 - 526 99081389 - TM1040_1548 - 5'-nucleotidase-like 1549 61.06 0 1656405..1656743 + 112 99081390 - TM1040_1549 - hypothetical protein 1550 64.12 +1 1656807..1657865 + 352 99081391 - TM1040_1550 - dihydroorotate dehydrogenase 2 1551 62.74 0 1658100..1659422 - 440 99081392 - TM1040_1551 - MATE efflux family protein 1552 59.73 0 1659441..1659959 - 172 99081393 - TM1040_1552 - hypothetical protein 1553 61.94 0 1659956..1660378 - 140 99081394 - TM1040_1553 - phenylacetic acid degradation-related protein 1554 57.45 0 1660504..1660872 + 122 99081395 - TM1040_1554 - MerR family transcriptional regulator 1555 54.84 -1 1660885..1661163 + 92 99081396 - TM1040_1555 - hypothetical protein 1556 57.96 0 1661412..1661813 + 133 99081397 - TM1040_1556 - MerR family transcriptional regulator 1557 60.04 0 1661878..1663659 + 593 99081398 - TM1040_1557 - acyl-CoA dehydrogenase-like 1558 57.28 0 1663752..1663964 + 70 99081399 - TM1040_1558 - hypothetical protein 1559 59.11 0 1664004..1665167 + 387 99081400 - TM1040_1559 - acyl-CoA dehydrogenase-like 1560 56.71 -1 1665453..1666085 + 210 99081401 - TM1040_1560 - glutathione S-transferase-like 1561 60.40 0 1666096..1667307 + 403 99081402 - TM1040_1561 - acetyl-CoA acetyltransferase 1562 61.53 0 1667347..1669548 + 733 99081403 - TM1040_1562 - 3-hydroxyacyl-CoA dehydrogenase 1563 60.89 0 1669877..1670569 - 230 99081404 - TM1040_1563 - hypothetical protein 1564 55.41 -1 1670697..1671362 - 221 99081405 - TM1040_1564 - hypothetical protein 1565 59.87 0 1671523..1673154 + 543 99081406 - TM1040_1565 - AMP-dependent synthetase and ligase 1566 48.13 -2 1673331..1673972 - 213 99081407 - TM1040_1566 - hypothetical protein 1567 63.26 0 1674284..1675339 + 351 99081408 - TM1040_1567 - hypothetical protein 1568 64.99 +1 1675407..1676660 - 417 99081409 - TM1040_1568 - sporulation related 1569 60.19 0 1676842..1677474 - 210 99081410 - TM1040_1569 - uracil phosphoribosyltransferase 1570 63.46 0 1677559..1678773 - 404 99081411 - TM1040_1570 - phosphopentomutase 1571 65.59 +1 1678773..1680077 - 434 99081412 deoA TM1040_1571 - thymidine phosphorylase 1572 63.23 0 1680082..1680576 - 164 99081413 - TM1040_1572 - cytidine deaminase 1573 60.96 0 1680851..1683130 + 759 99081414 - TM1040_1573 - malic enzyme 1574 61.91 0 1683467..1685359 + 630 99081415 - TM1040_1574 - AMP-dependent synthetase and ligase 1575 55.71 -1 1685432..1685641 - 69 99081416 - TM1040_1575 - CsbD-like 1576 57.88 0 1685763..1686308 - 181 99081417 - TM1040_1576 - hypothetical protein 1577 63.67 +1 1686460..1687896 + 478 99081418 - TM1040_1577 - amidase 1578 61.64 0 1688007..1688762 - 251 99081419 ppnK TM1040_1578 - inorganic polyphosphate/ATP-NAD kinase 1579 62.27 0 1688939..1690234 + 431 99081420 - TM1040_1579 - serine hydroxymethyltransferase 1580 61.76 0 1690351..1691043 + 230 99081421 - TM1040_1580 - hypothetical protein 1581 55.21 -1 1691081..1691368 - 95 99081422 - TM1040_1581 - hypothetical protein 1582 62.37 0 1691455..1692153 - 232 99081423 - TM1040_1582 - phage shock protein A, PspA 1583 61.64 0 1692230..1692826 - 198 99081424 - TM1040_1583 - TetR family transcriptional regulator 1584 59.76 0 1692970..1693896 + 308 99081425 - TM1040_1584 - hypothetical protein 1585 59.56 0 1693850..1694215 - 121 99081426 - TM1040_1585 - hypothetical protein 1586 62.71 0 1694338..1695096 + 252 99081427 - TM1040_1586 - alpha/beta hydrolase fold 1587 59.41 0 1695177..1696058 - 293 99081428 - TM1040_1587 - DNA adenine methylase Dam 1588 61.13 0 1696199..1699753 - 1184 99081429 - TM1040_1588 - Outer membrane autotransporter barrel 1589 58.89 0 1700175..1701434 - 419 99081430 - TM1040_1589 - TRAP dicarboxylate transporter- DctM subunit 1590 59.44 0 1701431..1701970 - 179 99081431 - TM1040_1590 - tripartite ATP-independent periplasmic transporter DctQ 1591 60.04 0 1702034..1703014 - 326 99081432 - TM1040_1591 - TRAP dicarboxylate transporter- DctP subunit 1592 58.69 0 1703050..1703613 - 187 99081433 - TM1040_1592 - 3-hydroxyanthranilate 3,4-dioxygenase 1593 60.59 0 1703743..1704630 - 295 99081434 - TM1040_1593 - hypothetical protein 1594 57.86 0 1704640..1705593 - 317 99081435 - TM1040_1594 - dihydrodipicolinate synthetase 1595 64.77 +1 1705772..1706560 + 262 99081436 - TM1040_1595 - L-aspartate dehydrogenase 1596 60.56 0 1706570..1707535 + 321 99081437 - TM1040_1596 - LysR family transcriptional regulator 1597 61.77 0 1707581..1709071 + 496 99081438 - TM1040_1597 - succinate semialdehyde dehydrogenase 1598 60.66 0 1709078..1710358 - 426 99081439 - TM1040_1598 - twin-arginine translocation pathway signal 1599 58.22 0 1710889..1711800 - 303 99081440 - TM1040_1599 - hemolysin-type calcium-binding region 1600 53.77 -2 1712411..1712728 + 105 99081441 - TM1040_1600 - hypothetical protein 1601 47.40 -2 1712755..1713351 - 198 99081442 - TM1040_1601 - hypothetical protein 1602 46.02 -2 1713369..1714235 - 288 99081443 - TM1040_1602 - hypothetical protein 1603 58.65 0 1714470..1714868 - 132 99081444 - TM1040_1603 - hypothetical protein 1604 61.23 0 1714865..1715674 - 269 99081445 - TM1040_1604 - hypothetical protein 1605 62.53 0 1715676..1716110 - 144 99081446 - TM1040_1605 - hypothetical protein 1606 57.91 0 1716107..1716403 - 98 99081447 - TM1040_1606 - hypothetical protein 1607 61.21 0 1716410..1716757 - 115 99081448 - TM1040_1607 - hypothetical protein 1608 61.68 0 1716735..1717235 - 166 99081449 - TM1040_1608 - hypothetical protein 1609 60.78 0 1717238..1718308 - 356 99081450 - TM1040_1609 - hypothetical protein 1610 56.40 -1 1718305..1719249 - 314 99081451 - TM1040_1610 - hypothetical protein 1611 58.62 0 1719249..1723772 - 1507 99081452 - TM1040_1611 - hypothetical protein 1612 60.71 0 1724207..1724542 - 111 99081453 - TM1040_1612 - hypothetical protein 1613 55.11 -1 1724641..1725090 - 149 99081454 - TM1040_1613 - hypothetical protein 1614 58.89 0 1725189..1725638 - 149 99081455 - TM1040_1614 - hypothetical protein 1615 56.49 -1 1725699..1725983 - 94 99081456 - TM1040_1615 - hypothetical protein 1616 60.73 0 1726025..1726378 - 117 99081457 - TM1040_1616 - hypothetical protein 1617 58.11 0 1726378..1726833 - 151 99081458 - TM1040_1617 - hypothetical protein 1618 57.67 0 1726834..1727211 + 125 99081459 - TM1040_1618 - hypothetical protein 1619 58.42 0 1727252..1727833 - 193 99081460 - TM1040_1619 - phiE125 gp8 hypothetical protein 1620 57.58 0 1727837..1728298 - 153 99081461 - TM1040_1620 - hypothetical protein 1621 64.07 +1 1728295..1728756 - 153 99081462 - TM1040_1621 - hypothetical protein 1622 61.89 0 1728820..1730139 - 439 99081463 - TM1040_1622 - hypothetical protein 1623 64.35 +1 1730142..1731089 - 315 99081464 - TM1040_1623 - serine peptidase 1624 58.28 0 1731086..1732372 - 428 99081465 - TM1040_1624 - Phage portal protein, HK97 1625 60.02 0 1732375..1734075 - 566 99081466 - TM1040_1625 - phage terminase 1626 57.69 0 1734086..1734631 - 181 99081467 - TM1040_1626 - hypothetical protein 1627 56.70 -1 1734735..1735055 + 106 99081468 - TM1040_1627 - hypothetical protein 1628 60.81 0 1735346..1735738 + 130 99081469 - TM1040_1628 - hypothetical protein 1629 60.11 0 1736144..1738018 - 624 99081470 - TM1040_1629 - hypothetical protein 1630 60.99 0 1738048..1738329 - 93 99081471 - TM1040_1630 - hypothetical protein 1631 60.02 0 1738333..1739175 - 280 99081472 - TM1040_1631 - hypothetical protein 1632 61.04 0 1739172..1739651 - 159 99081473 - TM1040_1632 - hypothetical protein 1633 58.16 0 1739641..1740522 - 293 99081474 - TM1040_1633 - hypothetical protein 60.41 MEAN 3.16 STD DEV
Last Updated: Dec 04, 2008
Funding for this work was provided by the Peter Wall Institute for Advanced Studies. This service is hosted by the Brinkman Laboratory of the Department of Molecular Biology and Biochemistry at Simon Fraser University.
version
1.0