version 1.0
Silicibacter sp. TM1040, complete genome - 1..3200938 3030 proteins Pos %G+C SD Location Strand Length PID Gene Synonym Code Product 1495 60.35 0 1600230..1601147 - 305 99081336 - TM1040_1495 - binding-protein-dependent transport systems inner membrane component 1496 58.98 0 1601172..1601939 - 255 99081337 - TM1040_1496 - ABC transporter related 1497 59.93 0 1602053..1603507 - 484 99081338 - TM1040_1497 - dihydropyrimidinase 1498 60.59 0 1603637..1604887 - 416 99081339 - TM1040_1498 - allantoate amidohydrolase 1499 56.21 -1 1605177..1605788 + 203 99081340 - TM1040_1499 - TetR family transcriptional regulator 1500 58.70 0 1606078..1607382 - 434 99081341 - TM1040_1500 - dihydropyrimidine dehydrogenase 1501 62.32 0 1607447..1608781 - 444 99081342 - TM1040_1501 - putative oxidoreductase 1502 55.81 -1 1609074..1609340 - 88 99081343 - TM1040_1502 - hypothetical protein 1503 62.04 0 1609548..1609763 + 71 99081344 - TM1040_1503 - hypothetical protein 1504 57.87 0 1609805..1610020 - 71 99081345 - TM1040_1504 - hypothetical protein 1505 59.44 0 1610302..1610730 + 142 99081346 - TM1040_1505 - hypothetical protein 1506 60.02 0 1610887..1612149 - 420 99081347 - TM1040_1506 - surface presentation of antigens (SPOA) protein 1507 61.24 0 1612226..1614916 - 896 99081348 - TM1040_1507 - periplasmic sensor signal transduction histidine kinase 1508 64.49 +1 1614913..1615326 - 137 99081349 - TM1040_1508 - hypothetical protein 1509 59.18 0 1615337..1615750 - 137 99081350 - TM1040_1509 - response regulator receiver protein 1510 65.39 +1 1615849..1617180 - 443 99081351 - TM1040_1510 - XRE family transcriptional regulator 1511 61.25 0 1617419..1618765 + 448 99081352 - TM1040_1511 - twin-arginine translocation pathway signal 1512 58.24 0 1618965..1619996 + 343 99081353 - TM1040_1512 - inner-membrane translocator 1513 58.42 0 1620001..1621200 + 399 99081354 - TM1040_1513 - inner-membrane translocator 1514 59.92 0 1621211..1621966 + 251 99081355 - TM1040_1514 - ABC transporter related 1515 60.71 0 1621985..1622740 + 251 99081356 - TM1040_1515 - ABC transporter related 1516 58.83 0 1622952..1623500 + 182 99081357 - TM1040_1516 - LuxR family transcriptional regulator 1517 64.02 +1 1623674..1624165 + 163 99081358 - TM1040_1517 - biotin carboxyl carrier protein 1518 60.52 0 1624175..1625524 + 449 99081359 - TM1040_1518 - acetyl-CoA carboxylase biotin carboxylase subunit 1519 59.24 0 1625590..1626222 + 210 99081360 aat TM1040_1519 - leucyl/phenylalanyl-tRNA--protein transferase 1520 59.13 0 1626186..1626623 - 145 99081361 - TM1040_1520 - hypothetical protein 1521 59.82 0 1626623..1627075 - 150 99081362 - TM1040_1521 - hypothetical protein 1522 59.43 0 1627146..1627532 - 128 99081363 - TM1040_1522 - NADH dehydrogenase 1523 54.71 -1 1627653..1628045 - 130 99081364 - TM1040_1523 - glyoxalase/bleomycin resistance protein/dioxygenase 1524 59.56 0 1628057..1628422 - 121 99081365 - TM1040_1524 - endoribonuclease L-PSP 1525 64.74 +1 1628514..1629239 - 241 99081366 - TM1040_1525 - dienelactone hydrolase 1526 58.14 0 1629344..1630609 - 421 99081367 clpX TM1040_1526 - ATP-dependent protease ATP-binding subunit 1527 56.77 -1 1630761..1631417 - 218 99081368 - TM1040_1527 - ATP-dependent Clp protease proteolytic subunit ClpP 1528 58.93 0 1631689..1632696 + 335 99081369 - TM1040_1528 - transcriptional regulator 1529 64.09 +1 1632820..1633362 + 180 99081370 - TM1040_1529 - hypothetical protein 1530 64.75 +1 1633394..1635007 + 537 99081371 - TM1040_1530 - thiamine pyrophosphate enzyme-like TPP-binding 1531 61.18 0 1634991..1636193 + 400 99081372 - TM1040_1531 - L-carnitine dehydratase/bile acid-inducible protein F 1532 62.56 0 1636457..1637821 + 454 99081373 - TM1040_1532 - hypothetical protein 1533 60.93 0 1637844..1639151 + 435 99081374 - TM1040_1533 - hypothetical protein 1534 60.84 0 1639148..1640674 + 508 99081375 mdoG TM1040_1534 - glucan biosynthesis protein G 1535 62.92 0 1640675..1642567 + 630 99081376 - TM1040_1535 - glucosyltransferase MdoH 1536 61.73 0 1642659..1643489 - 276 99081377 - TM1040_1536 - putative polyhydroxybutyrate depolymerase 1537 64.77 +1 1643486..1644013 - 175 99081378 - TM1040_1537 - rhodanese-like protein 1538 60.13 0 1644301..1647162 + 953 99081379 - TM1040_1538 - putative monovalent cation/H+ antiporter subunit A 1539 62.15 0 1647167..1647520 + 117 99081380 - TM1040_1539 - putative monovalent cation/H+ antiporter subunit C 1540 61.31 0 1647517..1649139 + 540 99081381 - TM1040_1540 - putative monovalent cation/H+ antiporter subunit D 1541 59.84 0 1649139..1649636 + 165 99081382 - TM1040_1541 - putative monovalent cation/H+ antiporter subunit E 1542 54.44 -1 1649633..1649902 + 89 99081383 - TM1040_1542 - putative monovalent cation/H+ antiporter subunit F 1543 58.99 0 1649913..1650290 + 125 99081384 - TM1040_1543 - putative monovalent cation/H+ antiporter subunit G 1544 63.25 0 1650329..1652491 + 720 99081385 - TM1040_1544 - AIR synthase related protein-like 1545 61.30 0 1652518..1653561 - 347 99081386 - TM1040_1545 - tRNA 2-selenouridine synthase 1546 61.32 0 1653637..1654122 + 161 99081387 - TM1040_1546 - MarR family transcriptional regulator 1547 62.71 0 1654155..1654457 - 100 99081388 - TM1040_1547 - hypothetical protein 1548 60.47 0 1654635..1656215 - 526 99081389 - TM1040_1548 - 5'-nucleotidase-like 1549 61.06 0 1656405..1656743 + 112 99081390 - TM1040_1549 - hypothetical protein 1550 64.12 +1 1656807..1657865 + 352 99081391 - TM1040_1550 - dihydroorotate dehydrogenase 2 1551 62.74 0 1658100..1659422 - 440 99081392 - TM1040_1551 - MATE efflux family protein 1552 59.73 0 1659441..1659959 - 172 99081393 - TM1040_1552 - hypothetical protein 1553 61.94 0 1659956..1660378 - 140 99081394 - TM1040_1553 - phenylacetic acid degradation-related protein 1554 57.45 0 1660504..1660872 + 122 99081395 - TM1040_1554 - MerR family transcriptional regulator 1555 54.84 -1 1660885..1661163 + 92 99081396 - TM1040_1555 - hypothetical protein 1556 57.96 0 1661412..1661813 + 133 99081397 - TM1040_1556 - MerR family transcriptional regulator 1557 60.04 0 1661878..1663659 + 593 99081398 - TM1040_1557 - acyl-CoA dehydrogenase-like 1558 57.28 0 1663752..1663964 + 70 99081399 - TM1040_1558 - hypothetical protein 1559 59.11 0 1664004..1665167 + 387 99081400 - TM1040_1559 - acyl-CoA dehydrogenase-like 1560 56.71 -1 1665453..1666085 + 210 99081401 - TM1040_1560 - glutathione S-transferase-like 1561 60.40 0 1666096..1667307 + 403 99081402 - TM1040_1561 - acetyl-CoA acetyltransferase 1562 61.53 0 1667347..1669548 + 733 99081403 - TM1040_1562 - 3-hydroxyacyl-CoA dehydrogenase 1563 60.89 0 1669877..1670569 - 230 99081404 - TM1040_1563 - hypothetical protein 1564 55.41 -1 1670697..1671362 - 221 99081405 - TM1040_1564 - hypothetical protein 1565 59.87 0 1671523..1673154 + 543 99081406 - TM1040_1565 - AMP-dependent synthetase and ligase 1566 48.13 -2 1673331..1673972 - 213 99081407 - TM1040_1566 - hypothetical protein 1567 63.26 0 1674284..1675339 + 351 99081408 - TM1040_1567 - hypothetical protein 1568 64.99 +1 1675407..1676660 - 417 99081409 - TM1040_1568 - sporulation related 1569 60.19 0 1676842..1677474 - 210 99081410 - TM1040_1569 - uracil phosphoribosyltransferase 1570 63.46 0 1677559..1678773 - 404 99081411 - TM1040_1570 - phosphopentomutase 1571 65.59 +1 1678773..1680077 - 434 99081412 deoA TM1040_1571 - thymidine phosphorylase 1572 63.23 0 1680082..1680576 - 164 99081413 - TM1040_1572 - cytidine deaminase 1573 60.96 0 1680851..1683130 + 759 99081414 - TM1040_1573 - malic enzyme 1574 61.91 0 1683467..1685359 + 630 99081415 - TM1040_1574 - AMP-dependent synthetase and ligase 1575 55.71 -1 1685432..1685641 - 69 99081416 - TM1040_1575 - CsbD-like 1576 57.88 0 1685763..1686308 - 181 99081417 - TM1040_1576 - hypothetical protein 1577 63.67 +1 1686460..1687896 + 478 99081418 - TM1040_1577 - amidase 1578 61.64 0 1688007..1688762 - 251 99081419 ppnK TM1040_1578 - inorganic polyphosphate/ATP-NAD kinase 1579 62.27 0 1688939..1690234 + 431 99081420 - TM1040_1579 - serine hydroxymethyltransferase 1580 61.76 0 1690351..1691043 + 230 99081421 - TM1040_1580 - hypothetical protein 1581 55.21 -1 1691081..1691368 - 95 99081422 - TM1040_1581 - hypothetical protein 1582 62.37 0 1691455..1692153 - 232 99081423 - TM1040_1582 - phage shock protein A, PspA 1583 61.64 0 1692230..1692826 - 198 99081424 - TM1040_1583 - TetR family transcriptional regulator 1584 59.76 0 1692970..1693896 + 308 99081425 - TM1040_1584 - hypothetical protein 1585 59.56 0 1693850..1694215 - 121 99081426 - TM1040_1585 - hypothetical protein 1586 62.71 0 1694338..1695096 + 252 99081427 - TM1040_1586 - alpha/beta hydrolase fold 1587 59.41 0 1695177..1696058 - 293 99081428 - TM1040_1587 - DNA adenine methylase Dam 1588 61.13 0 1696199..1699753 - 1184 99081429 - TM1040_1588 - Outer membrane autotransporter barrel 1589 58.89 0 1700175..1701434 - 419 99081430 - TM1040_1589 - TRAP dicarboxylate transporter- DctM subunit 1590 59.44 0 1701431..1701970 - 179 99081431 - TM1040_1590 - tripartite ATP-independent periplasmic transporter DctQ 1591 60.04 0 1702034..1703014 - 326 99081432 - TM1040_1591 - TRAP dicarboxylate transporter- DctP subunit 1592 58.69 0 1703050..1703613 - 187 99081433 - TM1040_1592 - 3-hydroxyanthranilate 3,4-dioxygenase 1593 60.59 0 1703743..1704630 - 295 99081434 - TM1040_1593 - hypothetical protein 1594 57.86 0 1704640..1705593 - 317 99081435 - TM1040_1594 - dihydrodipicolinate synthetase 60.41 MEAN 3.16 STD DEV
Last Updated: Dec 04, 2008
Funding for this work was provided by the Peter Wall Institute for Advanced Studies. This service is hosted by the Brinkman Laboratory of the Department of Molecular Biology and Biochemistry at Simon Fraser University.
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1.0