version 1.0
Silicibacter sp. TM1040, complete genome - 1..3200938 3030 proteins Pos %G+C SD Location Strand Length PID Gene Synonym Code Product 1404 62.60 0 1497608..1498393 - 261 99081245 - TM1040_1404 - UDP-N-acetylglucosamine acyltransferase 1405 56.31 -1 1498393..1498875 - 160 99081246 - TM1040_1405 - 3-hydroxyacyl-[acyl-carrier-protein] dehydratase 1406 61.17 0 1498939..1499484 - 181 99081247 - TM1040_1406 - outer membrane chaperone Skp (OmpH) 1407 58.68 0 1499580..1501970 - 796 99081248 - TM1040_1407 - surface antigen (D15) 1408 53.49 -2 1502126..1502254 - 42 99081249 - TM1040_1408 - hypothetical protein 1409 61.05 0 1502394..1503746 - 450 99081250 - TM1040_1409 - peptidase RseP 1410 62.04 0 1503751..1504938 - 395 99081251 - TM1040_1410 - 1-deoxy-D-xylulose 5-phosphate reductoisomerase 1411 60.15 0 1504970..1505767 - 265 99081252 - TM1040_1411 - phosphatidate cytidylyltransferase 1412 60.57 0 1505764..1506534 - 256 99081253 - TM1040_1412 - undecaprenyl pyrophosphate synthetase 1413 58.33 0 1506544..1507107 - 187 99081254 - TM1040_1413 - ribosome recycling factor 1414 60.27 0 1507284..1508033 - 249 99081255 - TM1040_1414 - uridylate kinase 1415 62.63 0 1508184..1509050 + 288 99081256 - TM1040_1415 - tRNA delta(2)-isopentenylpyrophosphate transferase 1416 61.97 0 1509244..1510074 + 276 99081257 - TM1040_1416 - AraC family transcriptional regulator 1417 60.01 0 1510334..1512001 + 555 99081258 - TM1040_1417 - twin-arginine translocation pathway signal 1418 56.98 -1 1512170..1513222 + 350 99081259 - TM1040_1418 - binding-protein-dependent transport systems inner membrane component 1419 58.66 0 1513238..1514674 + 478 99081260 - TM1040_1419 - binding-protein-dependent transport systems inner membrane component 1420 59.05 0 1514770..1516857 + 695 99081261 - TM1040_1420 - oligopeptide/dipeptide ABC transporter, ATP-binding protein-like 1421 58.69 0 1516976..1518391 - 471 99081262 - TM1040_1421 - tetratricopeptide TPR_2 1422 59.19 0 1518520..1519656 - 378 99081263 - TM1040_1422 - di-haem cytochrome c peroxidase 1423 62.40 0 1519788..1520162 - 124 99081264 - TM1040_1423 - hypothetical protein 1424 60.42 0 1520328..1520903 - 191 99081265 - TM1040_1424 - lytic transglycosylase, catalytic 1425 63.62 +1 1521186..1521710 + 174 99081266 - TM1040_1425 - single-strand binding protein 1426 59.47 0 1521820..1524237 - 805 99081267 - TM1040_1426 - FAD dependent oxidoreductase 1427 59.28 0 1524444..1525757 - 437 99081268 - TM1040_1427 - hypothetical protein 1428 60.80 0 1525837..1526790 - 317 99081269 - TM1040_1428 - phage integrase 1429 64.32 +1 1526794..1528326 - 510 99081270 - TM1040_1429 - hypothetical protein 1430 51.33 -2 1528316..1528465 - 49 99081271 - TM1040_1430 - hypothetical protein 1431 58.38 0 1528549..1529139 + 196 99081272 - TM1040_1431 - shikimate kinase 1432 63.73 +1 1529139..1530260 + 373 99081273 - TM1040_1432 - 3-dehydroquinate synthase 1433 63.48 0 1530278..1530904 + 208 99081274 - TM1040_1433 - hypothetical protein 1434 58.07 0 1530905..1531567 - 220 99081275 - TM1040_1434 - type I secretion target repeat-containing protein 1435 51.98 -2 1531769..1532020 - 83 99081276 - TM1040_1435 - hypothetical protein 1436 60.75 0 1532091..1532918 - 275 99081277 - TM1040_1436 - enoyl-CoA hydratase/isomerase 1437 60.63 0 1532982..1533809 - 275 99081278 - TM1040_1437 - inositol monophosphatase 1438 60.29 0 1534364..1536886 - 840 99081279 - TM1040_1438 - MscS mechanosensitive ion channel 1439 59.92 0 1536892..1538076 - 394 99081280 - TM1040_1439 - cysteine synthase A 1440 59.10 0 1538196..1538750 - 184 99081281 - TM1040_1440 - tellurite resistance protein 1441 61.68 0 1538768..1540192 - 474 99081282 - TM1040_1441 - deoxyribodipyrimidine photo-lyase type I 1442 60.33 0 1540223..1541452 - 409 99081283 - TM1040_1442 - aminotransferase, class V 1443 64.36 +1 1541561..1542556 - 331 99081284 - TM1040_1443 - zinc-binding alcohol dehydrogenase 1444 60.19 0 1542571..1543728 - 385 99081285 dmdA TM1040_1444 - putative dimethyl sulfoniopropionate demethylase 1445 60.89 0 1543768..1544442 - 224 99081286 - TM1040_1445 - hypothetical protein 1446 59.04 0 1544461..1545234 - 257 99081287 - TM1040_1446 - hypothetical protein 1447 63.25 0 1545359..1546090 + 243 99081288 - TM1040_1447 - GntR family transcriptional regulator 1448 58.16 0 1546769..1547203 + 144 99081289 - TM1040_1448 - hypothetical protein 1449 60.30 0 1547314..1548600 + 428 99081290 - TM1040_1449 - chromate transporter 1450 54.79 -1 1548715..1549194 + 159 99081291 - TM1040_1450 - hypothetical protein 1451 56.75 -1 1549340..1549924 - 194 99081292 - TM1040_1451 - hypothetical protein 1452 60.80 0 1550169..1551566 + 465 99081293 fumC TM1040_1452 - fumarate hydratase 1453 56.01 -1 1551847..1553010 + 387 99081294 - TM1040_1453 - hypothetical protein 1454 62.77 0 1553015..1553245 + 76 99081295 - TM1040_1454 - uncharacterized arylsulfate sulfotransferase-like protein 1455 61.59 0 1553254..1554612 - 452 99081296 - TM1040_1455 - cytochrome P450 1456 60.50 0 1554609..1555856 - 415 99081297 - TM1040_1456 - hypothetical protein 1457 58.03 0 1555970..1556722 - 250 99081298 - TM1040_1457 - cytochrome c biogenesis protein, transmembrane region 1458 57.38 0 1556817..1557053 + 78 99081299 - TM1040_1458 - SirA-like 1459 60.87 0 1557176..1560106 - 976 99081300 - TM1040_1459 - RNAse E 1460 63.19 0 1560700..1561389 - 229 99081301 - TM1040_1460 - HAD family hydrolase 1461 60.31 0 1561389..1562726 - 445 99081302 - TM1040_1461 - two component, sigma54 specific, Fis family transcriptional regulator 1462 62.12 0 1562751..1564553 - 600 99081303 - TM1040_1462 - periplasmic sensor signal transduction histidine kinase 1463 62.03 0 1564590..1565258 - 222 99081304 - TM1040_1463 - phosphoribosylformylglycinamidine synthase subunit I 1464 59.31 0 1565258..1565488 - 76 99081305 - TM1040_1464 - phosphoribosylformylglycinamidine synthetase PurS 1465 60.10 0 1565595..1566356 - 253 161899029 - TM1040_1465 - phosphoribosylaminoimidazole-succinocarboxamide synthase 1466 59.43 0 1566817..1567134 + 105 99081307 - TM1040_1466 - hypothetical protein 1467 64.10 +1 1567246..1569153 + 635 99081308 - TM1040_1467 - hypothetical protein 1468 62.95 0 1569216..1570238 + 340 99081309 - TM1040_1468 - methionine synthase I 1469 63.99 +1 1570319..1571401 - 360 99081310 - TM1040_1469 - radical SAM family protein 1470 58.66 0 1571618..1572316 + 232 99081311 - TM1040_1470 - 5-methyltetrahydrofolate--homocysteine S-methyltransferase 1471 59.97 0 1572318..1573064 + 248 99081312 - TM1040_1471 - hypothetical protein 1472 59.57 0 1573147..1573569 - 140 99081313 - TM1040_1472 - cysteine desulfuration protein SufE 1473 60.27 0 1573688..1574203 + 171 99081314 - TM1040_1473 - putative lipoprotein 1474 59.67 0 1574347..1575504 - 385 99081315 - TM1040_1474 - ribonuclease D 1475 64.14 +1 1575595..1576149 - 184 99081316 - TM1040_1475 - phosphoribosylglycinamide formyltransferase 1476 62.94 0 1576197..1577243 - 348 99081317 - TM1040_1476 - phosphoribosylaminoimidazole synthetase 1477 62.85 0 1577426..1578394 - 322 99081318 - TM1040_1477 - twin-arginine translocation pathway signal 1478 61.08 0 1578515..1579444 + 309 99081319 - TM1040_1478 - LysR family transcriptional regulator 1479 60.80 0 1579845..1581173 - 442 99081320 - TM1040_1479 - periplasmic sensor signal transduction histidine kinase 1480 61.36 0 1581224..1582147 + 307 99081321 - TM1040_1480 - beta-lactamase-like 1481 59.06 0 1582635..1583594 - 319 99081322 - TM1040_1481 - NAD-dependent epimerase/dehydratase 1482 58.20 0 1583603..1584724 - 373 99081323 - TM1040_1482 - GDP-mannose 4,6-dehydratase 1483 57.33 0 1584788..1585987 - 399 99081324 - TM1040_1483 - DegT/DnrJ/EryC1/StrS aminotransferase 1484 56.33 -1 1585984..1586757 - 257 99081325 - TM1040_1484 - glycosyl transferase family protein 1485 60.34 0 1586750..1587571 - 273 99081326 - TM1040_1485 - NAD-dependent epimerase/dehydratase 1486 57.76 0 1587568..1588521 - 317 99081327 - TM1040_1486 - hypothetical protein 1487 56.95 -1 1588830..1590218 + 462 99081328 - TM1040_1487 - methyl-accepting chemotaxis sensory transducer with Pas/Pac sensor 1488 59.65 0 1591016..1593580 + 854 99081329 - TM1040_1488 - hemolysin-type calcium-binding region 1489 60.08 0 1593933..1595891 + 652 99081330 - TM1040_1489 - acetyl-coenzyme A synthetase 1490 62.43 0 1595898..1596581 + 227 99081331 - TM1040_1490 - adenylate kinase 1491 60.48 0 1596744..1597244 + 166 99081332 - TM1040_1491 - flavin reductase-like, FMN-binding 1492 59.54 0 1597298..1598041 - 247 99081333 - TM1040_1492 - 4Fe-4S ferredoxin, iron-sulfur binding 1493 59.07 0 1598143..1599129 - 328 99081334 - TM1040_1493 - ABC transporter, periplasmic substrate-binding protein 1494 61.23 0 1599332..1600177 - 281 99081335 - TM1040_1494 - binding-protein-dependent transport systems inner membrane component 1495 60.35 0 1600230..1601147 - 305 99081336 - TM1040_1495 - binding-protein-dependent transport systems inner membrane component 1496 58.98 0 1601172..1601939 - 255 99081337 - TM1040_1496 - ABC transporter related 1497 59.93 0 1602053..1603507 - 484 99081338 - TM1040_1497 - dihydropyrimidinase 1498 60.59 0 1603637..1604887 - 416 99081339 - TM1040_1498 - allantoate amidohydrolase 1499 56.21 -1 1605177..1605788 + 203 99081340 - TM1040_1499 - TetR family transcriptional regulator 1500 58.70 0 1606078..1607382 - 434 99081341 - TM1040_1500 - dihydropyrimidine dehydrogenase 1501 62.32 0 1607447..1608781 - 444 99081342 - TM1040_1501 - putative oxidoreductase 1502 55.81 -1 1609074..1609340 - 88 99081343 - TM1040_1502 - hypothetical protein 1503 62.04 0 1609548..1609763 + 71 99081344 - TM1040_1503 - hypothetical protein 60.41 MEAN 3.16 STD DEV
Last Updated: Dec 04, 2008
Funding for this work was provided by the Peter Wall Institute for Advanced Studies. This service is hosted by the Brinkman Laboratory of the Department of Molecular Biology and Biochemistry at Simon Fraser University.
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