IslandPathversion 1.0

IslandPath Analysis: Silicibacter sp. TM1040



Each circle in the graphic corresponds to a predicted protein-coding ORF in the genome. Circle colours indicate if an ORF has a higher or lower %G+C than cutoffs you set below --(default is +/- 3.48 of the mean %G+C). Strike lines across the circles represent regions with dinucleotide bias above a pre-determined cutoff. Click on a circle to view a different portion of the table presented below the graph (default is the first 100 ORFs).
A yellow circle indicates its %G+C value is bigger than the high value. A green circle indicates its %G+C value is bigger than the low value and smaller than the high value. A pink circle indicates its %G+C value is smaller than the low value. A strike line across the circles indicates the region has dinucleotide bais above 1 STD DEV. A black verticle bar indicates a transfer RNA gene lies between the two ORFs. A purple verticle bar indicates a ribosomal RNA gene lies between the two ORFs. A deep blue verticle bar indicates both a tRNA and rRNA gene lie between the two ORFs. A black square indicates the dot is annotated as a transposase. A black triangle indicates the dot is annotated as an integrase. Low: High: Mean: 60.41 STD DEV: 3.16
Silicibacter sp. TM1040, complete genome - 1..3200938
3030 proteins
Pos	%G+C	SD	Location	Strand	Length	PID	Gene	Synonym	Code	Product
1340	 58.19	0	1427655..1428362	+	235	99081181	-	TM1040_1340	-	hypothetical protein
1341	 56.85	-1	1428363..1429391	-	342	99081182	-	TM1040_1341	-	patatin
1342	 58.91	0	1429486..1430259	-	257	99081183	-	TM1040_1342	-	3-hydroxybutyrate dehydrogenase
1343	 58.80	0	1430594..1432423	+	609	99081184	-	TM1040_1343	-	extracellular solute-binding protein
1344	 53.20	-2	1432587..1432883	+	98	99081185	-	TM1040_1344	-	hypothetical protein
1345	 59.37	0	1432942..1433571	-	209	99081186	-	TM1040_1345	-	XRE family transcriptional regulator
1346	 60.30	0	1433650..1435158	+	502	99081187	-	TM1040_1346	-	AMP-dependent synthetase and ligase
1347	 57.26	0	1435162..1435863	+	233	99081188	-	TM1040_1347	-	DSBA oxidoreductase
1348	 57.19	-1	1436054..1437277	+	407	99081189	-	TM1040_1348	-	major facilitator transporter
1349	 58.61	0	1437358..1440807	-	1149	99081190	-	TM1040_1349	-	transcription-repair coupling factor
1350	 55.19	-1	1440838..1441377	-	179	99081191	-	TM1040_1350	-	hypothetical protein
1351	 58.57	0	1441498..1442535	+	345	99081192	-	TM1040_1351	-	delta-aminolevulinic acid dehydratase
1352	 60.73	0	1442665..1443237	+	190	99081193	-	TM1040_1352	-	twin-arginine translocation pathway signal sequence domain-containing protein
1353	 60.60	0	1443294..1444166	-	290	99081194	-	TM1040_1353	-	3-hydroxyisobutyrate dehydrogenase
1354	 61.65	0	1444280..1446769	+	829	99081195	-	TM1040_1354	-	penicillin amidase
1355	 59.51	0	1446786..1448057	-	423	99081196	-	TM1040_1355	-	GTP-binding protein, HSR1-related
1356	 50.83	-2	1448057..1448296	-	79	99081197	hfq	TM1040_1356	-	RNA-binding protein Hfq
1357	 59.71	0	1448429..1449967	-	512	99081198	-	TM1040_1357	-	cation transporter
1358	 60.57	0	1449969..1451345	-	458	99081199	trkA	TM1040_1358	-	potassium transporter peripheral membrane component
1359	 58.99	0	1451445..1452863	-	472	99081200	-	TM1040_1359	-	two component, sigma54 specific, Fis family transcriptional regulator
1360	 58.51	0	1452860..1455139	-	759	99081201	-	TM1040_1360	-	multi-sensor signal transduction histidine kinase
1361	 59.57	0	1455239..1456618	-	459	99081202	-	TM1040_1361	-	two component, sigma54 specific, Fis family transcriptional regulator
1362	 58.31	0	1456636..1457724	-	362	99081203	-	TM1040_1362	-	signal transduction histidine kinase, nitrogen specific, NtrB
1363	 61.50	0	1457721..1458707	-	328	99081204	-	TM1040_1363	-	dihydrouridine synthase TIM-barrel protein nifR3
1364	 61.53	0	1458902..1460050	+	382	99081205	-	TM1040_1364	-	2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase 2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase
1365	 60.84	0	1460047..1460544	+	165	99081206	-	TM1040_1365	-	phosphatidylglycerophosphatase
1366	 62.92	0	1460541..1461020	+	159	99081207	-	TM1040_1366	-	CinA-like
1367	 58.17	0	1461054..1461500	-	148	99081208	-	TM1040_1367	-	cyclase/dehydrase
1368	 56.17	-1	1461575..1462117	+	180	99081209	-	TM1040_1368	-	hypoxanthine phosphoribosyltransferase
1369	 60.86	0	1462243..1462569	+	108	99081210	-	TM1040_1369	-	hypothetical protein
1370	 59.93	0	1462602..1463744	-	380	99081211	-	TM1040_1370	-	peptidase M20D, amidohydrolase
1371	 58.21	0	1463741..1464733	-	330	99081212	-	TM1040_1371	-	lipoyl synthase
1372	 57.59	0	1464883..1465929	-	348	99081213	-	TM1040_1372	-	hypothetical protein
1373	 63.06	0	1466164..1466496	+	110	99081214	-	TM1040_1373	-	hypothetical protein
1374	 60.26	0	1466516..1468060	-	514	99081215	-	TM1040_1374	-	trimethylamine methyltransferase
1375	 59.25	0	1468257..1469819	+	520	99081216	guaA	TM1040_1375	-	bifunctional GMP synthase/glutamine amidotransferase protein
1376	 59.96	0	1469995..1470888	+	297	99081217	-	TM1040_1376	-	hypothetical protein
1377	 59.30	0	1471021..1472160	+	379	99081218	-	TM1040_1377	-	membrane protein involved in aromatic hydrocarbon degradation
1378	 56.91	-1	1472383..1473192	+	269	99081219	-	TM1040_1378	-	hypothetical protein
1379	 57.93	0	1473238..1474176	+	312	99081220	-	TM1040_1379	-	homoserine O-succinyltransferase
1380	 62.73	0	1474186..1475151	+	321	99081221	-	TM1040_1380	-	alpha/beta hydrolase fold
1381	 57.47	0	1475213..1476082	+	289	99081222	-	TM1040_1381	-	hypothetical protein
1382	 60.68	0	1476075..1476692	+	205	99081223	-	TM1040_1382	-	TetR family transcriptional regulator
1383	 58.03	0	1476848..1478965	+	705	99081224	-	TM1040_1383	-	methyl-accepting chemotaxis sensory transducer
1384	 61.73	0	1479063..1479548	-	161	99081225	rpsI	TM1040_1384	-	30S ribosomal protein S9
1385	 58.39	0	1479554..1480012	-	152	99081226	rplM	TM1040_1385	-	50S ribosomal protein L13
1386	 60.88	0	1480196..1481611	-	471	99081227	-	TM1040_1386	-	GntR family transcriptional regulator
1387	 57.68	0	1481680..1481946	-	88	99081228	-	TM1040_1387	-	hypothetical protein
1388	 58.38	0	1482166..1482672	+	168	99081229	-	TM1040_1388	-	S-adenosylmethionine decarboxylase related
1389	 57.43	0	1482669..1483523	+	284	99081230	-	TM1040_1389	-	spermidine synthase
1390	 58.87	0	1483581..1484003	-	140	99081231	-	TM1040_1390	-	phenylacetic acid degradation-related protein
1391	 60.75	0	1484388..1485740	+	450	99081232	-	TM1040_1391	-	tRNA (uracil-5-)-methyltransferase Gid
1392	 58.37	0	1485777..1486391	+	204	99081233	-	TM1040_1392	-	methyltransferase type 11
1393	 60.42	0	1486388..1487236	+	282	99081234	-	TM1040_1393	-	glutamyl-tRNA synthetase, class Ic
1394	 56.41	-1	1487246..1487635	-	129	99081235	-	TM1040_1394	-	phosphoribosyl-AMP cyclohydrolase
1395	 61.21	0	1487653..1488147	+	164	99081236	-	TM1040_1395	-	hypothetical protein
1396	 55.04	-1	1488276..1488533	+	85	99081237	-	TM1040_1396	-	hypothetical protein
1397	 61.50	0	1488653..1490743	-	696	99081238	-	TM1040_1397	-	DEAD/DEAH box helicase-like
1398	 60.90	0	1490751..1492970	-	739	99081239	-	TM1040_1398	-	DNA ligase, NAD-dependent
1399	 54.86	-1	1493148..1493867	-	239	99081240	-	TM1040_1399	-	two component transcriptional regulator
1400	 55.56	-1	1493993..1494271	-	92	99081241	-	TM1040_1400	-	hypothetical protein
1401	 58.55	0	1494429..1495574	+	381	99081242	-	TM1040_1401	-	tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
1402	 62.36	0	1495642..1496802	-	386	99081243	-	TM1040_1402	-	lipid-A-disaccharide synthase
1403	 63.50	0	1496806..1497594	-	262	99081244	-	TM1040_1403	-	hypothetical protein
1404	 62.60	0	1497608..1498393	-	261	99081245	-	TM1040_1404	-	UDP-N-acetylglucosamine acyltransferase
1405	 56.31	-1	1498393..1498875	-	160	99081246	-	TM1040_1405	-	3-hydroxyacyl-[acyl-carrier-protein] dehydratase
1406	 61.17	0	1498939..1499484	-	181	99081247	-	TM1040_1406	-	outer membrane chaperone Skp (OmpH)
1407	 58.68	0	1499580..1501970	-	796	99081248	-	TM1040_1407	-	surface antigen (D15)
1408	 53.49	-2	1502126..1502254	-	42	99081249	-	TM1040_1408	-	hypothetical protein
1409	 61.05	0	1502394..1503746	-	450	99081250	-	TM1040_1409	-	peptidase RseP
1410	 62.04	0	1503751..1504938	-	395	99081251	-	TM1040_1410	-	1-deoxy-D-xylulose 5-phosphate reductoisomerase
1411	 60.15	0	1504970..1505767	-	265	99081252	-	TM1040_1411	-	phosphatidate cytidylyltransferase
1412	 60.57	0	1505764..1506534	-	256	99081253	-	TM1040_1412	-	undecaprenyl pyrophosphate synthetase
1413	 58.33	0	1506544..1507107	-	187	99081254	-	TM1040_1413	-	ribosome recycling factor
1414	 60.27	0	1507284..1508033	-	249	99081255	-	TM1040_1414	-	uridylate kinase
1415	 62.63	0	1508184..1509050	+	288	99081256	-	TM1040_1415	-	tRNA delta(2)-isopentenylpyrophosphate transferase
1416	 61.97	0	1509244..1510074	+	276	99081257	-	TM1040_1416	-	AraC family transcriptional regulator
1417	 60.01	0	1510334..1512001	+	555	99081258	-	TM1040_1417	-	twin-arginine translocation pathway signal
1418	 56.98	-1	1512170..1513222	+	350	99081259	-	TM1040_1418	-	binding-protein-dependent transport systems inner membrane component
1419	 58.66	0	1513238..1514674	+	478	99081260	-	TM1040_1419	-	binding-protein-dependent transport systems inner membrane component
1420	 59.05	0	1514770..1516857	+	695	99081261	-	TM1040_1420	-	oligopeptide/dipeptide ABC transporter, ATP-binding protein-like
1421	 58.69	0	1516976..1518391	-	471	99081262	-	TM1040_1421	-	tetratricopeptide TPR_2
1422	 59.19	0	1518520..1519656	-	378	99081263	-	TM1040_1422	-	di-haem cytochrome c peroxidase
1423	 62.40	0	1519788..1520162	-	124	99081264	-	TM1040_1423	-	hypothetical protein
1424	 60.42	0	1520328..1520903	-	191	99081265	-	TM1040_1424	-	lytic transglycosylase, catalytic
1425	 63.62	+1	1521186..1521710	+	174	99081266	-	TM1040_1425	-	single-strand binding protein
1426	 59.47	0	1521820..1524237	-	805	99081267	-	TM1040_1426	-	FAD dependent oxidoreductase
1427	 59.28	0	1524444..1525757	-	437	99081268	-	TM1040_1427	-	hypothetical protein
1428	 60.80	0	1525837..1526790	-	317	99081269	-	TM1040_1428	-	phage integrase
1429	 64.32	+1	1526794..1528326	-	510	99081270	-	TM1040_1429	-	hypothetical protein
1430	 51.33	-2	1528316..1528465	-	49	99081271	-	TM1040_1430	-	hypothetical protein
1431	 58.38	0	1528549..1529139	+	196	99081272	-	TM1040_1431	-	shikimate kinase
1432	 63.73	+1	1529139..1530260	+	373	99081273	-	TM1040_1432	-	3-dehydroquinate synthase
1433	 63.48	0	1530278..1530904	+	208	99081274	-	TM1040_1433	-	hypothetical protein
1434	 58.07	0	1530905..1531567	-	220	99081275	-	TM1040_1434	-	type I secretion target repeat-containing protein
1435	 51.98	-2	1531769..1532020	-	83	99081276	-	TM1040_1435	-	hypothetical protein
1436	 60.75	0	1532091..1532918	-	275	99081277	-	TM1040_1436	-	enoyl-CoA hydratase/isomerase
1437	 60.63	0	1532982..1533809	-	275	99081278	-	TM1040_1437	-	inositol monophosphatase
1438	 60.29	0	1534364..1536886	-	840	99081279	-	TM1040_1438	-	MscS mechanosensitive ion channel
1439	 59.92	0	1536892..1538076	-	394	99081280	-	TM1040_1439	-	cysteine synthase A
60.41	MEAN

3.16	STD DEV



Last Updated: Dec 04, 2008

Funding for this work was provided by the Peter Wall Institute for Advanced Studies. This service is hosted by the Brinkman Laboratory of the Department of Molecular Biology and Biochemistry at Simon Fraser University.