version 1.0
Silicibacter sp. TM1040, complete genome - 1..3200938 3030 proteins Pos %G+C SD Location Strand Length PID Gene Synonym Code Product 1336 60.80 0 1424076..1424825 - 249 99081177 - TM1040_1336 - RNA methyltransferase TrmH, group 1 1337 64.30 +1 1424982..1425614 + 210 99081178 - TM1040_1337 - thiamine monophosphate synthase 1338 63.92 +1 1425754..1426662 + 302 99081179 - TM1040_1338 - PfkB 1339 61.17 0 1426659..1427567 + 302 99081180 - TM1040_1339 - indigoidine synthase A like protein 1340 58.19 0 1427655..1428362 + 235 99081181 - TM1040_1340 - hypothetical protein 1341 56.85 -1 1428363..1429391 - 342 99081182 - TM1040_1341 - patatin 1342 58.91 0 1429486..1430259 - 257 99081183 - TM1040_1342 - 3-hydroxybutyrate dehydrogenase 1343 58.80 0 1430594..1432423 + 609 99081184 - TM1040_1343 - extracellular solute-binding protein 1344 53.20 -2 1432587..1432883 + 98 99081185 - TM1040_1344 - hypothetical protein 1345 59.37 0 1432942..1433571 - 209 99081186 - TM1040_1345 - XRE family transcriptional regulator 1346 60.30 0 1433650..1435158 + 502 99081187 - TM1040_1346 - AMP-dependent synthetase and ligase 1347 57.26 0 1435162..1435863 + 233 99081188 - TM1040_1347 - DSBA oxidoreductase 1348 57.19 -1 1436054..1437277 + 407 99081189 - TM1040_1348 - major facilitator transporter 1349 58.61 0 1437358..1440807 - 1149 99081190 - TM1040_1349 - transcription-repair coupling factor 1350 55.19 -1 1440838..1441377 - 179 99081191 - TM1040_1350 - hypothetical protein 1351 58.57 0 1441498..1442535 + 345 99081192 - TM1040_1351 - delta-aminolevulinic acid dehydratase 1352 60.73 0 1442665..1443237 + 190 99081193 - TM1040_1352 - twin-arginine translocation pathway signal sequence domain-containing protein 1353 60.60 0 1443294..1444166 - 290 99081194 - TM1040_1353 - 3-hydroxyisobutyrate dehydrogenase 1354 61.65 0 1444280..1446769 + 829 99081195 - TM1040_1354 - penicillin amidase 1355 59.51 0 1446786..1448057 - 423 99081196 - TM1040_1355 - GTP-binding protein, HSR1-related 1356 50.83 -2 1448057..1448296 - 79 99081197 hfq TM1040_1356 - RNA-binding protein Hfq 1357 59.71 0 1448429..1449967 - 512 99081198 - TM1040_1357 - cation transporter 1358 60.57 0 1449969..1451345 - 458 99081199 trkA TM1040_1358 - potassium transporter peripheral membrane component 1359 58.99 0 1451445..1452863 - 472 99081200 - TM1040_1359 - two component, sigma54 specific, Fis family transcriptional regulator 1360 58.51 0 1452860..1455139 - 759 99081201 - TM1040_1360 - multi-sensor signal transduction histidine kinase 1361 59.57 0 1455239..1456618 - 459 99081202 - TM1040_1361 - two component, sigma54 specific, Fis family transcriptional regulator 1362 58.31 0 1456636..1457724 - 362 99081203 - TM1040_1362 - signal transduction histidine kinase, nitrogen specific, NtrB 1363 61.50 0 1457721..1458707 - 328 99081204 - TM1040_1363 - dihydrouridine synthase TIM-barrel protein nifR3 1364 61.53 0 1458902..1460050 + 382 99081205 - TM1040_1364 - 2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase 2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase 1365 60.84 0 1460047..1460544 + 165 99081206 - TM1040_1365 - phosphatidylglycerophosphatase 1366 62.92 0 1460541..1461020 + 159 99081207 - TM1040_1366 - CinA-like 1367 58.17 0 1461054..1461500 - 148 99081208 - TM1040_1367 - cyclase/dehydrase 1368 56.17 -1 1461575..1462117 + 180 99081209 - TM1040_1368 - hypoxanthine phosphoribosyltransferase 1369 60.86 0 1462243..1462569 + 108 99081210 - TM1040_1369 - hypothetical protein 1370 59.93 0 1462602..1463744 - 380 99081211 - TM1040_1370 - peptidase M20D, amidohydrolase 1371 58.21 0 1463741..1464733 - 330 99081212 - TM1040_1371 - lipoyl synthase 1372 57.59 0 1464883..1465929 - 348 99081213 - TM1040_1372 - hypothetical protein 1373 63.06 0 1466164..1466496 + 110 99081214 - TM1040_1373 - hypothetical protein 1374 60.26 0 1466516..1468060 - 514 99081215 - TM1040_1374 - trimethylamine methyltransferase 1375 59.25 0 1468257..1469819 + 520 99081216 guaA TM1040_1375 - bifunctional GMP synthase/glutamine amidotransferase protein 1376 59.96 0 1469995..1470888 + 297 99081217 - TM1040_1376 - hypothetical protein 1377 59.30 0 1471021..1472160 + 379 99081218 - TM1040_1377 - membrane protein involved in aromatic hydrocarbon degradation 1378 56.91 -1 1472383..1473192 + 269 99081219 - TM1040_1378 - hypothetical protein 1379 57.93 0 1473238..1474176 + 312 99081220 - TM1040_1379 - homoserine O-succinyltransferase 1380 62.73 0 1474186..1475151 + 321 99081221 - TM1040_1380 - alpha/beta hydrolase fold 1381 57.47 0 1475213..1476082 + 289 99081222 - TM1040_1381 - hypothetical protein 1382 60.68 0 1476075..1476692 + 205 99081223 - TM1040_1382 - TetR family transcriptional regulator 1383 58.03 0 1476848..1478965 + 705 99081224 - TM1040_1383 - methyl-accepting chemotaxis sensory transducer 1384 61.73 0 1479063..1479548 - 161 99081225 rpsI TM1040_1384 - 30S ribosomal protein S9 1385 58.39 0 1479554..1480012 - 152 99081226 rplM TM1040_1385 - 50S ribosomal protein L13 1386 60.88 0 1480196..1481611 - 471 99081227 - TM1040_1386 - GntR family transcriptional regulator 1387 57.68 0 1481680..1481946 - 88 99081228 - TM1040_1387 - hypothetical protein 1388 58.38 0 1482166..1482672 + 168 99081229 - TM1040_1388 - S-adenosylmethionine decarboxylase related 1389 57.43 0 1482669..1483523 + 284 99081230 - TM1040_1389 - spermidine synthase 1390 58.87 0 1483581..1484003 - 140 99081231 - TM1040_1390 - phenylacetic acid degradation-related protein 1391 60.75 0 1484388..1485740 + 450 99081232 - TM1040_1391 - tRNA (uracil-5-)-methyltransferase Gid 1392 58.37 0 1485777..1486391 + 204 99081233 - TM1040_1392 - methyltransferase type 11 1393 60.42 0 1486388..1487236 + 282 99081234 - TM1040_1393 - glutamyl-tRNA synthetase, class Ic 1394 56.41 -1 1487246..1487635 - 129 99081235 - TM1040_1394 - phosphoribosyl-AMP cyclohydrolase 1395 61.21 0 1487653..1488147 + 164 99081236 - TM1040_1395 - hypothetical protein 1396 55.04 -1 1488276..1488533 + 85 99081237 - TM1040_1396 - hypothetical protein 1397 61.50 0 1488653..1490743 - 696 99081238 - TM1040_1397 - DEAD/DEAH box helicase-like 1398 60.90 0 1490751..1492970 - 739 99081239 - TM1040_1398 - DNA ligase, NAD-dependent 1399 54.86 -1 1493148..1493867 - 239 99081240 - TM1040_1399 - two component transcriptional regulator 1400 55.56 -1 1493993..1494271 - 92 99081241 - TM1040_1400 - hypothetical protein 1401 58.55 0 1494429..1495574 + 381 99081242 - TM1040_1401 - tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase 1402 62.36 0 1495642..1496802 - 386 99081243 - TM1040_1402 - lipid-A-disaccharide synthase 1403 63.50 0 1496806..1497594 - 262 99081244 - TM1040_1403 - hypothetical protein 1404 62.60 0 1497608..1498393 - 261 99081245 - TM1040_1404 - UDP-N-acetylglucosamine acyltransferase 1405 56.31 -1 1498393..1498875 - 160 99081246 - TM1040_1405 - 3-hydroxyacyl-[acyl-carrier-protein] dehydratase 1406 61.17 0 1498939..1499484 - 181 99081247 - TM1040_1406 - outer membrane chaperone Skp (OmpH) 1407 58.68 0 1499580..1501970 - 796 99081248 - TM1040_1407 - surface antigen (D15) 1408 53.49 -2 1502126..1502254 - 42 99081249 - TM1040_1408 - hypothetical protein 1409 61.05 0 1502394..1503746 - 450 99081250 - TM1040_1409 - peptidase RseP 1410 62.04 0 1503751..1504938 - 395 99081251 - TM1040_1410 - 1-deoxy-D-xylulose 5-phosphate reductoisomerase 1411 60.15 0 1504970..1505767 - 265 99081252 - TM1040_1411 - phosphatidate cytidylyltransferase 1412 60.57 0 1505764..1506534 - 256 99081253 - TM1040_1412 - undecaprenyl pyrophosphate synthetase 1413 58.33 0 1506544..1507107 - 187 99081254 - TM1040_1413 - ribosome recycling factor 1414 60.27 0 1507284..1508033 - 249 99081255 - TM1040_1414 - uridylate kinase 1415 62.63 0 1508184..1509050 + 288 99081256 - TM1040_1415 - tRNA delta(2)-isopentenylpyrophosphate transferase 1416 61.97 0 1509244..1510074 + 276 99081257 - TM1040_1416 - AraC family transcriptional regulator 1417 60.01 0 1510334..1512001 + 555 99081258 - TM1040_1417 - twin-arginine translocation pathway signal 1418 56.98 -1 1512170..1513222 + 350 99081259 - TM1040_1418 - binding-protein-dependent transport systems inner membrane component 1419 58.66 0 1513238..1514674 + 478 99081260 - TM1040_1419 - binding-protein-dependent transport systems inner membrane component 1420 59.05 0 1514770..1516857 + 695 99081261 - TM1040_1420 - oligopeptide/dipeptide ABC transporter, ATP-binding protein-like 1421 58.69 0 1516976..1518391 - 471 99081262 - TM1040_1421 - tetratricopeptide TPR_2 1422 59.19 0 1518520..1519656 - 378 99081263 - TM1040_1422 - di-haem cytochrome c peroxidase 1423 62.40 0 1519788..1520162 - 124 99081264 - TM1040_1423 - hypothetical protein 1424 60.42 0 1520328..1520903 - 191 99081265 - TM1040_1424 - lytic transglycosylase, catalytic 1425 63.62 +1 1521186..1521710 + 174 99081266 - TM1040_1425 - single-strand binding protein 1426 59.47 0 1521820..1524237 - 805 99081267 - TM1040_1426 - FAD dependent oxidoreductase 1427 59.28 0 1524444..1525757 - 437 99081268 - TM1040_1427 - hypothetical protein 1428 60.80 0 1525837..1526790 - 317 99081269 - TM1040_1428 - phage integrase 1429 64.32 +1 1526794..1528326 - 510 99081270 - TM1040_1429 - hypothetical protein 1430 51.33 -2 1528316..1528465 - 49 99081271 - TM1040_1430 - hypothetical protein 1431 58.38 0 1528549..1529139 + 196 99081272 - TM1040_1431 - shikimate kinase 1432 63.73 +1 1529139..1530260 + 373 99081273 - TM1040_1432 - 3-dehydroquinate synthase 1433 63.48 0 1530278..1530904 + 208 99081274 - TM1040_1433 - hypothetical protein 1434 58.07 0 1530905..1531567 - 220 99081275 - TM1040_1434 - type I secretion target repeat-containing protein 1435 51.98 -2 1531769..1532020 - 83 99081276 - TM1040_1435 - hypothetical protein 60.41 MEAN 3.16 STD DEV
Last Updated: Dec 04, 2008
Funding for this work was provided by the Peter Wall Institute for Advanced Studies. This service is hosted by the Brinkman Laboratory of the Department of Molecular Biology and Biochemistry at Simon Fraser University.
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