version 1.0
Silicibacter sp. TM1040, complete genome - 1..3200938 3030 proteins Pos %G+C SD Location Strand Length PID Gene Synonym Code Product 1286 56.29 -1 1383350..1383850 - 166 99081127 - TM1040_1286 - hypothetical protein 1287 62.90 0 1383852..1384859 - 335 99081128 - TM1040_1287 - putative secreted serine protease 1288 54.86 -1 1384859..1385146 - 95 99081129 - TM1040_1288 - hypothetical protein 1289 58.16 0 1385181..1385909 - 242 99081130 - TM1040_1289 - putative variable tail fibre protein 1290 57.14 -1 1385920..1386465 - 181 99081131 - TM1040_1290 - Phage tail protein I 1291 58.00 0 1386446..1387345 - 299 99081132 - TM1040_1291 - baseplate J-like protein 1292 53.98 -2 1387345..1387683 - 112 99081133 - TM1040_1292 - GPW/gp25 1293 60.82 0 1387732..1388022 - 96 99081134 - TM1040_1293 - PAAR 1294 60.32 0 1388022..1388399 - 125 99081135 - TM1040_1294 - phage baseplate assembly protein V 1295 57.54 0 1388396..1388932 - 178 99081136 - TM1040_1295 - hypothetical protein 1296 58.47 0 1388932..1389480 - 182 99081137 - TM1040_1296 - prophage LambdaW5, minor tail protein Z, putative 1297 61.54 0 1389485..1389796 - 103 99081138 - TM1040_1297 - hypothetical protein 1298 59.69 0 1389796..1390053 - 85 99081139 - TM1040_1298 - hypothetical protein 1299 61.75 0 1390120..1392111 - 663 99081140 - TM1040_1299 - peptidase U35, phage prohead HK97 1300 59.17 0 1392128..1393741 - 537 99081141 - TM1040_1300 - phage portal protein, lambda 1301 60.00 0 1393738..1394232 - 164 99081142 - TM1040_1301 - hypothetical protein 1302 61.70 0 1394279..1396231 - 650 99081143 - TM1040_1302 - phage terminase GpA 1303 61.98 0 1396228..1396782 - 184 99081144 - TM1040_1303 - phage DNA packaging Nu1 1304 66.67 +1 1396955..1397338 - 127 99081145 - TM1040_1304 - hypothetical protein 1305 60.10 0 1397338..1397748 - 136 99081146 - TM1040_1305 - glycoside hydrolase family protein 1306 55.70 -1 1398109..1398345 - 78 99081147 - TM1040_1306 - hypothetical protein 1307 45.77 -2 1398593..1399195 + 200 99081148 - TM1040_1307 - hypothetical protein 1308 46.33 -2 1399240..1399593 + 117 99081149 - TM1040_1308 - hypothetical protein 1309 50.27 -2 1399675..1400223 - 182 99081150 - TM1040_1309 - hypothetical protein 1310 65.42 +1 1400406..1400966 - 186 99081151 - TM1040_1310 - hypothetical protein 1311 61.19 0 1400970..1401371 - 133 99081152 - TM1040_1311 - hypothetical protein 1312 59.91 0 1401380..1401808 - 142 99081153 - TM1040_1312 - hypothetical protein 1313 59.94 0 1401814..1402140 - 108 99081154 - TM1040_1313 - hypothetical protein 1314 60.00 0 1402391..1402690 - 99 99081155 - TM1040_1314 - hypothetical protein 1315 58.76 0 1402687..1403685 - 332 99081156 - TM1040_1315 - hypothetical protein 1316 63.30 0 1403888..1404421 - 177 99081157 - TM1040_1316 - hypothetical protein 1317 60.76 0 1404414..1404701 - 95 99081158 - TM1040_1317 - hypothetical protein 1318 54.31 -1 1404882..1405148 + 88 99081159 - TM1040_1318 - hypothetical protein 1319 59.88 0 1405184..1405507 - 107 99081160 - TM1040_1319 - hypothetical protein 1320 56.60 -1 1405803..1406438 + 211 99081161 - TM1040_1320 - putative phage repressor 1321 56.75 -1 1406799..1407716 - 305 99081162 - TM1040_1321 - hypothetical protein 1322 55.19 -1 1407723..1408715 - 330 99081163 - TM1040_1322 - ankyrin 1323 53.10 -2 1409154..1409492 - 112 99081164 - TM1040_1323 - hypothetical protein 1324 48.16 -2 1409890..1412040 - 716 99081165 - TM1040_1324 - hypothetical protein 1325 63.70 +1 1412750..1413019 + 89 99081166 - TM1040_1325 - hypothetical protein 1326 60.14 0 1413107..1413550 + 147 99081167 - TM1040_1326 - hypothetical protein 1327 59.68 0 1413693..1414379 + 228 99081168 - TM1040_1327 - hypothetical protein 1328 53.59 -2 1414830..1415831 + 333 99081169 - TM1040_1328 - phage integrase 1329 57.59 0 1416383..1416856 + 157 99081170 - TM1040_1329 - thioesterase superfamily protein 1330 61.61 0 1416887..1417558 - 223 99081171 - TM1040_1330 - 6-phosphogluconolactonase 1331 52.96 -2 1417659..1417928 - 89 99081172 - TM1040_1331 - Usg-like 1332 58.89 0 1418119..1420857 + 912 99081173 - TM1040_1332 - DNA gyrase subunit A 1333 52.99 -2 1420988..1421338 + 116 99081174 - TM1040_1333 - hypothetical protein 1334 59.12 0 1421393..1422862 - 489 99081175 - TM1040_1334 - carboxypeptidase 1335 58.46 0 1422867..1424012 - 381 99081176 - TM1040_1335 - cytochrome oxidase assembly 1336 60.80 0 1424076..1424825 - 249 99081177 - TM1040_1336 - RNA methyltransferase TrmH, group 1 1337 64.30 +1 1424982..1425614 + 210 99081178 - TM1040_1337 - thiamine monophosphate synthase 1338 63.92 +1 1425754..1426662 + 302 99081179 - TM1040_1338 - PfkB 1339 61.17 0 1426659..1427567 + 302 99081180 - TM1040_1339 - indigoidine synthase A like protein 1340 58.19 0 1427655..1428362 + 235 99081181 - TM1040_1340 - hypothetical protein 1341 56.85 -1 1428363..1429391 - 342 99081182 - TM1040_1341 - patatin 1342 58.91 0 1429486..1430259 - 257 99081183 - TM1040_1342 - 3-hydroxybutyrate dehydrogenase 1343 58.80 0 1430594..1432423 + 609 99081184 - TM1040_1343 - extracellular solute-binding protein 1344 53.20 -2 1432587..1432883 + 98 99081185 - TM1040_1344 - hypothetical protein 1345 59.37 0 1432942..1433571 - 209 99081186 - TM1040_1345 - XRE family transcriptional regulator 1346 60.30 0 1433650..1435158 + 502 99081187 - TM1040_1346 - AMP-dependent synthetase and ligase 1347 57.26 0 1435162..1435863 + 233 99081188 - TM1040_1347 - DSBA oxidoreductase 1348 57.19 -1 1436054..1437277 + 407 99081189 - TM1040_1348 - major facilitator transporter 1349 58.61 0 1437358..1440807 - 1149 99081190 - TM1040_1349 - transcription-repair coupling factor 1350 55.19 -1 1440838..1441377 - 179 99081191 - TM1040_1350 - hypothetical protein 1351 58.57 0 1441498..1442535 + 345 99081192 - TM1040_1351 - delta-aminolevulinic acid dehydratase 1352 60.73 0 1442665..1443237 + 190 99081193 - TM1040_1352 - twin-arginine translocation pathway signal sequence domain-containing protein 1353 60.60 0 1443294..1444166 - 290 99081194 - TM1040_1353 - 3-hydroxyisobutyrate dehydrogenase 1354 61.65 0 1444280..1446769 + 829 99081195 - TM1040_1354 - penicillin amidase 1355 59.51 0 1446786..1448057 - 423 99081196 - TM1040_1355 - GTP-binding protein, HSR1-related 1356 50.83 -2 1448057..1448296 - 79 99081197 hfq TM1040_1356 - RNA-binding protein Hfq 1357 59.71 0 1448429..1449967 - 512 99081198 - TM1040_1357 - cation transporter 1358 60.57 0 1449969..1451345 - 458 99081199 trkA TM1040_1358 - potassium transporter peripheral membrane component 1359 58.99 0 1451445..1452863 - 472 99081200 - TM1040_1359 - two component, sigma54 specific, Fis family transcriptional regulator 1360 58.51 0 1452860..1455139 - 759 99081201 - TM1040_1360 - multi-sensor signal transduction histidine kinase 1361 59.57 0 1455239..1456618 - 459 99081202 - TM1040_1361 - two component, sigma54 specific, Fis family transcriptional regulator 1362 58.31 0 1456636..1457724 - 362 99081203 - TM1040_1362 - signal transduction histidine kinase, nitrogen specific, NtrB 1363 61.50 0 1457721..1458707 - 328 99081204 - TM1040_1363 - dihydrouridine synthase TIM-barrel protein nifR3 1364 61.53 0 1458902..1460050 + 382 99081205 - TM1040_1364 - 2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase 2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase 1365 60.84 0 1460047..1460544 + 165 99081206 - TM1040_1365 - phosphatidylglycerophosphatase 1366 62.92 0 1460541..1461020 + 159 99081207 - TM1040_1366 - CinA-like 1367 58.17 0 1461054..1461500 - 148 99081208 - TM1040_1367 - cyclase/dehydrase 1368 56.17 -1 1461575..1462117 + 180 99081209 - TM1040_1368 - hypoxanthine phosphoribosyltransferase 1369 60.86 0 1462243..1462569 + 108 99081210 - TM1040_1369 - hypothetical protein 1370 59.93 0 1462602..1463744 - 380 99081211 - TM1040_1370 - peptidase M20D, amidohydrolase 1371 58.21 0 1463741..1464733 - 330 99081212 - TM1040_1371 - lipoyl synthase 1372 57.59 0 1464883..1465929 - 348 99081213 - TM1040_1372 - hypothetical protein 1373 63.06 0 1466164..1466496 + 110 99081214 - TM1040_1373 - hypothetical protein 1374 60.26 0 1466516..1468060 - 514 99081215 - TM1040_1374 - trimethylamine methyltransferase 1375 59.25 0 1468257..1469819 + 520 99081216 guaA TM1040_1375 - bifunctional GMP synthase/glutamine amidotransferase protein 1376 59.96 0 1469995..1470888 + 297 99081217 - TM1040_1376 - hypothetical protein 1377 59.30 0 1471021..1472160 + 379 99081218 - TM1040_1377 - membrane protein involved in aromatic hydrocarbon degradation 1378 56.91 -1 1472383..1473192 + 269 99081219 - TM1040_1378 - hypothetical protein 1379 57.93 0 1473238..1474176 + 312 99081220 - TM1040_1379 - homoserine O-succinyltransferase 1380 62.73 0 1474186..1475151 + 321 99081221 - TM1040_1380 - alpha/beta hydrolase fold 1381 57.47 0 1475213..1476082 + 289 99081222 - TM1040_1381 - hypothetical protein 1382 60.68 0 1476075..1476692 + 205 99081223 - TM1040_1382 - TetR family transcriptional regulator 1383 58.03 0 1476848..1478965 + 705 99081224 - TM1040_1383 - methyl-accepting chemotaxis sensory transducer 1384 61.73 0 1479063..1479548 - 161 99081225 rpsI TM1040_1384 - 30S ribosomal protein S9 1385 58.39 0 1479554..1480012 - 152 99081226 rplM TM1040_1385 - 50S ribosomal protein L13 60.41 MEAN 3.16 STD DEV
Last Updated: Dec 04, 2008
Funding for this work was provided by the Peter Wall Institute for Advanced Studies. This service is hosted by the Brinkman Laboratory of the Department of Molecular Biology and Biochemistry at Simon Fraser University.
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1.0