version 1.0
Silicibacter sp. TM1040, complete genome - 1..3200938 3030 proteins Pos %G+C SD Location Strand Length PID Gene Synonym Code Product 1219 60.99 0 1309957..1311030 + 357 99081060 - TM1040_1219 - UDP-3-O-[3-hydroxymyristoyl] glucosamine N-acyltransferase 1220 51.94 -2 1311082..1311339 + 85 99081061 - TM1040_1220 - phosphopantetheine-binding 1221 59.97 0 1311374..1312582 + 402 99081062 - TM1040_1221 - 3-oxoacyl-[acyl-carrier-protein] synthase II 1222 59.59 0 1312723..1313358 - 211 99081063 - TM1040_1222 - invasion associated locus B 1223 58.90 0 1313953..1315497 + 514 99081064 - TM1040_1223 - protein of unknown function DUF853, NPT hydrolase putative 1224 62.18 0 1315559..1317007 - 482 99081065 - TM1040_1224 - inosine-5'-monophosphate dehydrogenase 1225 59.01 0 1317194..1318342 + 382 99081066 - TM1040_1225 - L-carnitine dehydratase/bile acid-inducible protein F 1226 60.91 0 1318425..1320509 + 694 99081067 - TM1040_1226 - ferredoxin 1227 61.39 0 1320632..1321807 + 391 99081068 - TM1040_1227 - Fmu (Sun) 1228 60.87 0 1321904..1324213 + 769 99081069 - TM1040_1228 - multi-sensor hybrid histidine kinase 1229 55.76 -1 1324244..1324903 - 219 99081070 - TM1040_1229 - hypothetical protein 1230 59.78 0 1325036..1326109 + 357 99081071 recA TM1040_1230 - recombinase A 1231 59.93 0 1326112..1326660 + 182 99081072 - TM1040_1231 - hypothetical protein 1232 59.99 0 1326722..1329430 + 902 99081073 alaS TM1040_1232 - alanyl-tRNA synthetase 1233 59.72 0 1329437..1329724 + 95 99081074 - TM1040_1233 - hypothetical protein 1234 60.49 0 1329844..1330620 + 258 99081075 - TM1040_1234 - glutamine amidotransferase, class-II 1235 61.78 0 1330689..1332509 - 606 99081076 - TM1040_1235 - GTP-binding protein TypA 1236 54.85 -1 1332636..1332965 - 109 99081077 - TM1040_1236 - small multidrug resistance protein 1237 60.33 0 1333106..1334272 - 388 99081078 - TM1040_1237 - HD domain-containing protein 1238 59.04 0 1334269..1334517 - 82 99081079 - TM1040_1238 - hypothetical protein 1239 58.10 0 1334517..1335170 - 217 99081080 - TM1040_1239 - hypothetical protein 1240 59.69 0 1335357..1335815 + 152 99081081 - TM1040_1240 - BadM/Rrf2 family transcriptional regulator 1241 61.97 0 1335882..1336925 + 347 99081082 - TM1040_1241 - aminotransferase, class V 1242 55.82 -1 1336941..1338461 + 506 99081083 - TM1040_1242 - cysteine desulfurase activator complex subunit SufB 1243 57.46 0 1338500..1338814 + 104 99081084 - TM1040_1243 - hypothetical protein 1244 56.60 -1 1338827..1339591 + 254 99081085 - TM1040_1244 - methyltransferase FkbM 1245 58.47 0 1339654..1340409 + 251 99081086 - TM1040_1245 - FeS assembly ATPase SufC 1246 59.80 0 1340409..1341689 + 426 99081087 - TM1040_1246 - SufBD 1247 57.41 0 1341698..1342183 + 161 99081088 - TM1040_1247 - hypothetical protein 1248 55.27 -1 1342183..1342761 + 192 99081089 - TM1040_1248 - hypothetical protein 1249 54.05 -2 1342754..1343974 + 406 99081090 - TM1040_1249 - cysteine desulfurase 1250 55.32 -1 1344152..1344583 - 143 99081091 - TM1040_1250 - hypothetical protein 1251 56.85 -1 1344583..1347180 - 865 99081092 - TM1040_1251 - TRAP transporter, 4TM/12TM fusion protein 1252 60.70 0 1347286..1348257 - 323 99081093 - TM1040_1252 - TRAP transporter solute receptor TAXI family protein 1253 54.50 -1 1348352..1349239 - 295 99081094 - TM1040_1253 - RpiR family transcriptional regulator 1254 59.17 0 1349387..1351786 + 799 99081095 - TM1040_1254 - FAD dependent oxidoreductase 1255 59.07 0 1352244..1353467 - 407 99081096 - TM1040_1255 - acyl-CoA dehydrogenase-like 1256 58.95 0 1353542..1354474 + 310 99081097 - TM1040_1256 - LysR family transcriptional regulator 1257 62.32 0 1354554..1355243 - 229 99081098 - TM1040_1257 - two component transcriptional regulator 1258 59.07 0 1355247..1355957 - 236 99081099 - TM1040_1258 - phosphate uptake regulator, PhoU 1259 58.27 0 1355974..1356771 - 265 99081100 - TM1040_1259 - phosphate ABC transporter permease 1260 59.06 0 1356784..1358151 - 455 99081101 - TM1040_1260 - phosphate ABC transporter permease 1261 60.85 0 1358151..1359629 - 492 99081102 - TM1040_1261 - phosphate ABC transporter permease 1262 58.60 0 1359739..1360779 - 346 99081103 - TM1040_1262 - phosphate ABC transporter, periplasmic phosphate-binding protein 1263 61.77 0 1361081..1362121 - 346 99081104 - TM1040_1263 - histidine kinase 1264 63.28 0 1362175..1363356 - 393 99081105 - TM1040_1264 - cystathionine gamma-synthase 1265 58.05 0 1363359..1363880 - 173 99081106 - TM1040_1265 - hexapaptide repeat-containing transferase 1266 59.79 0 1363877..1364530 - 217 99081107 - TM1040_1266 - guanylate kinase 1267 58.86 0 1364546..1365442 - 298 99081108 - TM1040_1267 - hypothetical protein 1268 62.34 0 1365684..1366631 + 315 99081109 - TM1040_1268 - hypothetical protein 1269 60.90 0 1366861..1368231 - 456 99081110 - TM1040_1269 - 3-deoxy-D-arabinoheptulosonate-7-phosphate synthase 1270 57.81 0 1368432..1369436 + 334 99081111 - TM1040_1270 - transcriptional regulator 1271 62.33 0 1369443..1370549 - 368 99081112 - TM1040_1271 - glucose sorbosone dehydrogenase 1272 60.50 0 1370689..1371888 + 399 99081113 - TM1040_1272 - extracellular ligand-binding receptor 1273 57.58 0 1371995..1372786 + 263 99081114 - TM1040_1273 - ABC transporter related 1274 58.82 0 1372783..1373496 + 237 99081115 - TM1040_1274 - ABC transporter related 1275 55.69 -1 1373500..1374510 + 336 99081116 - TM1040_1275 - inner-membrane translocator 1276 61.24 0 1374507..1375832 + 441 99081117 - TM1040_1276 - inner-membrane translocator 1277 53.57 -2 1375914..1376249 - 111 99081118 - TM1040_1277 - hypothetical protein 1278 58.46 0 1376648..1377646 - 332 99081119 - TM1040_1278 - phage late control D 1279 57.99 0 1377646..1377864 - 72 99081120 - TM1040_1279 - phage tail X 1280 56.93 -1 1377836..1378246 - 136 99081121 - TM1040_1280 - phage P2 GpU 1281 61.09 0 1378246..1380720 - 824 99081122 - TM1040_1281 - hypothetical protein 1282 57.00 -1 1380844..1381143 - 99 99081123 - TM1040_1282 - hypothetical protein 1283 59.17 0 1381153..1381659 - 168 99081124 - TM1040_1283 - phage major tail tube protein 1284 60.18 0 1381659..1382876 - 405 99081125 - TM1040_1284 - phage tail sheath protein 1285 54.17 -1 1382990..1383349 - 119 99081126 - TM1040_1285 - hypothetical protein 1286 56.29 -1 1383350..1383850 - 166 99081127 - TM1040_1286 - hypothetical protein 1287 62.90 0 1383852..1384859 - 335 99081128 - TM1040_1287 - putative secreted serine protease 1288 54.86 -1 1384859..1385146 - 95 99081129 - TM1040_1288 - hypothetical protein 1289 58.16 0 1385181..1385909 - 242 99081130 - TM1040_1289 - putative variable tail fibre protein 1290 57.14 -1 1385920..1386465 - 181 99081131 - TM1040_1290 - Phage tail protein I 1291 58.00 0 1386446..1387345 - 299 99081132 - TM1040_1291 - baseplate J-like protein 1292 53.98 -2 1387345..1387683 - 112 99081133 - TM1040_1292 - GPW/gp25 1293 60.82 0 1387732..1388022 - 96 99081134 - TM1040_1293 - PAAR 1294 60.32 0 1388022..1388399 - 125 99081135 - TM1040_1294 - phage baseplate assembly protein V 1295 57.54 0 1388396..1388932 - 178 99081136 - TM1040_1295 - hypothetical protein 1296 58.47 0 1388932..1389480 - 182 99081137 - TM1040_1296 - prophage LambdaW5, minor tail protein Z, putative 1297 61.54 0 1389485..1389796 - 103 99081138 - TM1040_1297 - hypothetical protein 1298 59.69 0 1389796..1390053 - 85 99081139 - TM1040_1298 - hypothetical protein 1299 61.75 0 1390120..1392111 - 663 99081140 - TM1040_1299 - peptidase U35, phage prohead HK97 1300 59.17 0 1392128..1393741 - 537 99081141 - TM1040_1300 - phage portal protein, lambda 1301 60.00 0 1393738..1394232 - 164 99081142 - TM1040_1301 - hypothetical protein 1302 61.70 0 1394279..1396231 - 650 99081143 - TM1040_1302 - phage terminase GpA 1303 61.98 0 1396228..1396782 - 184 99081144 - TM1040_1303 - phage DNA packaging Nu1 1304 66.67 +1 1396955..1397338 - 127 99081145 - TM1040_1304 - hypothetical protein 1305 60.10 0 1397338..1397748 - 136 99081146 - TM1040_1305 - glycoside hydrolase family protein 1306 55.70 -1 1398109..1398345 - 78 99081147 - TM1040_1306 - hypothetical protein 1307 45.77 -2 1398593..1399195 + 200 99081148 - TM1040_1307 - hypothetical protein 1308 46.33 -2 1399240..1399593 + 117 99081149 - TM1040_1308 - hypothetical protein 1309 50.27 -2 1399675..1400223 - 182 99081150 - TM1040_1309 - hypothetical protein 1310 65.42 +1 1400406..1400966 - 186 99081151 - TM1040_1310 - hypothetical protein 1311 61.19 0 1400970..1401371 - 133 99081152 - TM1040_1311 - hypothetical protein 1312 59.91 0 1401380..1401808 - 142 99081153 - TM1040_1312 - hypothetical protein 1313 59.94 0 1401814..1402140 - 108 99081154 - TM1040_1313 - hypothetical protein 1314 60.00 0 1402391..1402690 - 99 99081155 - TM1040_1314 - hypothetical protein 1315 58.76 0 1402687..1403685 - 332 99081156 - TM1040_1315 - hypothetical protein 1316 63.30 0 1403888..1404421 - 177 99081157 - TM1040_1316 - hypothetical protein 1317 60.76 0 1404414..1404701 - 95 99081158 - TM1040_1317 - hypothetical protein 1318 54.31 -1 1404882..1405148 + 88 99081159 - TM1040_1318 - hypothetical protein 60.41 MEAN 3.16 STD DEV
Last Updated: Dec 04, 2008
Funding for this work was provided by the Peter Wall Institute for Advanced Studies. This service is hosted by the Brinkman Laboratory of the Department of Molecular Biology and Biochemistry at Simon Fraser University.
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1.0