version 1.0
Silicibacter sp. TM1040, complete genome - 1..3200938 3030 proteins Pos %G+C SD Location Strand Length PID Gene Synonym Code Product 1163 59.50 0 1252474..1253520 - 348 99081004 - TM1040_1163 - ornithine cyclodeaminase 1164 61.61 0 1253517..1254446 - 309 99081005 - TM1040_1164 - amidinotransferase family protein 1165 63.12 0 1254443..1255372 - 309 99081006 - TM1040_1165 - arginase 1166 61.34 0 1255482..1255913 + 143 99081007 - TM1040_1166 - AsnC family transcriptional regulator 1167 64.35 +1 1255924..1256397 - 157 99081008 - TM1040_1167 - disulphide bond formation protein DsbB 1168 59.41 0 1256394..1256972 - 192 99081009 - TM1040_1168 - DedA family protein 1169 60.13 0 1257343..1259133 - 596 99081010 - TM1040_1169 - diguanylate cyclase with GAF sensor 1170 60.23 0 1259585..1261216 - 543 99081011 - TM1040_1170 - acyl-CoA synthetase 1171 62.67 0 1261221..1262021 - 266 99081012 - TM1040_1171 - enoyl-CoA hydratase 1172 58.00 0 1262032..1262481 - 149 99081013 - TM1040_1172 - OsmC-like protein 1173 59.49 0 1262504..1263646 - 380 99081014 - TM1040_1173 - glycine cleavage T protein (aminomethyl transferase) 1174 56.18 -1 1263806..1264339 - 177 99081015 - TM1040_1174 - AsnC family transcriptional regulator 1175 61.83 0 1264744..1265736 + 330 99081016 - TM1040_1175 - TRAP transporter solute receptor TAXI family protein 1176 63.39 0 1265730..1266737 - 335 99081017 - TM1040_1176 - hypothetical protein 1177 64.97 +1 1266814..1269228 - 804 99081018 - TM1040_1177 - hypothetical protein 1178 65.46 +1 1269225..1269887 - 220 99081019 - TM1040_1178 - ABC transporter related 1179 57.21 -1 1270013..1270456 + 147 99081020 - TM1040_1179 - Ion transport 2 1180 60.44 0 1270487..1271353 + 288 99081021 - TM1040_1180 - ribonuclease BN, putative 1181 62.20 0 1271442..1271687 + 81 99081022 - TM1040_1181 - hypothetical protein 1182 59.83 0 1271718..1272434 - 238 99081023 - TM1040_1182 - ribosomal RNA methyltransferase RrmJ/FtsJ 1183 62.08 0 1272519..1273631 - 370 99081024 - TM1040_1183 - Ppx/GppA phosphatase 1184 59.93 0 1273898..1274194 + 98 99081025 - TM1040_1184 - hypothetical protein 1185 58.95 0 1274224..1275156 + 310 99081026 - TM1040_1185 - metF protein-like 1186 60.91 0 1275160..1276218 + 352 99081027 - TM1040_1186 - methyltetrahydrofolate:corrinoid/iron-sulfur protein methyltransferase 1187 57.99 0 1276546..1277559 + 337 99081028 - TM1040_1187 - sugar ABC transporter (sugar-binding protein) 1188 58.20 0 1277641..1279176 + 511 99081029 - TM1040_1188 - ABC transporter related 1189 59.44 0 1279188..1280183 + 331 99081030 - TM1040_1189 - inner-membrane translocator 1190 60.65 0 1280191..1281171 + 326 99081031 - TM1040_1190 - DeoR family transcriptional regulator 1191 60.94 0 1281161..1282156 + 331 99081032 - TM1040_1191 - aldo/keto reductase 1192 62.70 0 1282229..1283944 + 571 99081033 - TM1040_1192 - FAD dependent oxidoreductase 1193 57.83 0 1283941..1284777 + 278 99081034 - TM1040_1193 - deoxyribose-phosphate aldolase/phospho-2-dehydro-3-deoxyheptonate aldolase 1194 62.76 0 1284794..1286305 + 503 99081035 - TM1040_1194 - carbohydrate kinase, FGGY 1195 61.11 0 1286318..1286605 + 95 99081036 - TM1040_1195 - antibiotic biosynthesis monooxygenase 1196 59.15 0 1286849..1287859 + 336 99081037 - TM1040_1196 - AraC family transcriptional regulator 1197 64.63 +1 1288124..1288369 + 81 99081038 - TM1040_1197 - hypothetical protein 1198 59.39 0 1288731..1289417 + 228 99081039 - TM1040_1198 - hypothetical protein 1199 59.45 0 1289858..1290730 + 290 99081040 - TM1040_1199 - hypothetical protein 1200 59.97 0 1290983..1291579 + 198 99081041 - TM1040_1200 - fused 50S ribosomal protein L21/unknown domain-containing protein 1201 58.89 0 1291592..1291861 + 89 99081042 rpmA TM1040_1201 - 50S ribosomal protein L27 1202 58.10 0 1292084..1292620 + 178 99081043 - TM1040_1202 - GCN5-related N-acetyltransferase 1203 62.08 0 1292795..1293841 + 348 99081044 obgE TM1040_1203 - GTPase ObgE 1204 64.77 +1 1293829..1294935 + 368 99081045 - TM1040_1204 - gamma-glutamyl kinase 1205 62.45 0 1294988..1296292 + 434 99081046 - TM1040_1205 - glutamate-5-semialdehyde dehydrogenase 1206 59.46 0 1296378..1296974 - 198 99081047 - TM1040_1206 - hypothetical protein 1207 55.74 -1 1297004..1297186 + 60 99081048 - TM1040_1207 - hypothetical protein 1208 59.45 0 1297294..1298055 + 253 99081049 - TM1040_1208 - ornithine-acyl[acyl carrier protein] N-acyltransferase 1209 60.86 0 1298052..1298912 + 286 99081050 - TM1040_1209 - lyso-ornithine lipid acyltransferase 1210 61.61 0 1299082..1299852 + 256 99081051 rpsB TM1040_1210 - 30S ribosomal protein S2 1211 59.36 0 1299933..1300808 + 291 99081052 tsf TM1040_1211 - elongation factor Ts 1212 58.20 0 1301262..1302017 - 251 99081053 - TM1040_1212 - LuxR family transcriptional regulator 1213 56.49 -1 1302014..1302514 - 166 99081054 - TM1040_1213 - hypothetical protein 1214 58.79 0 1302602..1303312 + 236 99081055 - TM1040_1214 - enoyl-CoA hydratase/isomerase 1215 53.90 -2 1304000..1304461 - 153 99081056 - TM1040_1215 - response regulator receiver protein 1216 55.50 -1 1304451..1306760 - 769 99081057 - TM1040_1216 - multi-sensor signal transduction histidine kinase 1217 59.26 0 1307375..1307941 - 188 99081058 - TM1040_1217 - twin-arginine translocation pathway signal 1218 60.75 0 1308297..1309919 + 540 99081059 - TM1040_1218 - peptidoglycan binding domain-containing protein 1219 60.99 0 1309957..1311030 + 357 99081060 - TM1040_1219 - UDP-3-O-[3-hydroxymyristoyl] glucosamine N-acyltransferase 1220 51.94 -2 1311082..1311339 + 85 99081061 - TM1040_1220 - phosphopantetheine-binding 1221 59.97 0 1311374..1312582 + 402 99081062 - TM1040_1221 - 3-oxoacyl-[acyl-carrier-protein] synthase II 1222 59.59 0 1312723..1313358 - 211 99081063 - TM1040_1222 - invasion associated locus B 1223 58.90 0 1313953..1315497 + 514 99081064 - TM1040_1223 - protein of unknown function DUF853, NPT hydrolase putative 1224 62.18 0 1315559..1317007 - 482 99081065 - TM1040_1224 - inosine-5'-monophosphate dehydrogenase 1225 59.01 0 1317194..1318342 + 382 99081066 - TM1040_1225 - L-carnitine dehydratase/bile acid-inducible protein F 1226 60.91 0 1318425..1320509 + 694 99081067 - TM1040_1226 - ferredoxin 1227 61.39 0 1320632..1321807 + 391 99081068 - TM1040_1227 - Fmu (Sun) 1228 60.87 0 1321904..1324213 + 769 99081069 - TM1040_1228 - multi-sensor hybrid histidine kinase 1229 55.76 -1 1324244..1324903 - 219 99081070 - TM1040_1229 - hypothetical protein 1230 59.78 0 1325036..1326109 + 357 99081071 recA TM1040_1230 - recombinase A 1231 59.93 0 1326112..1326660 + 182 99081072 - TM1040_1231 - hypothetical protein 1232 59.99 0 1326722..1329430 + 902 99081073 alaS TM1040_1232 - alanyl-tRNA synthetase 1233 59.72 0 1329437..1329724 + 95 99081074 - TM1040_1233 - hypothetical protein 1234 60.49 0 1329844..1330620 + 258 99081075 - TM1040_1234 - glutamine amidotransferase, class-II 1235 61.78 0 1330689..1332509 - 606 99081076 - TM1040_1235 - GTP-binding protein TypA 1236 54.85 -1 1332636..1332965 - 109 99081077 - TM1040_1236 - small multidrug resistance protein 1237 60.33 0 1333106..1334272 - 388 99081078 - TM1040_1237 - HD domain-containing protein 1238 59.04 0 1334269..1334517 - 82 99081079 - TM1040_1238 - hypothetical protein 1239 58.10 0 1334517..1335170 - 217 99081080 - TM1040_1239 - hypothetical protein 1240 59.69 0 1335357..1335815 + 152 99081081 - TM1040_1240 - BadM/Rrf2 family transcriptional regulator 1241 61.97 0 1335882..1336925 + 347 99081082 - TM1040_1241 - aminotransferase, class V 1242 55.82 -1 1336941..1338461 + 506 99081083 - TM1040_1242 - cysteine desulfurase activator complex subunit SufB 1243 57.46 0 1338500..1338814 + 104 99081084 - TM1040_1243 - hypothetical protein 1244 56.60 -1 1338827..1339591 + 254 99081085 - TM1040_1244 - methyltransferase FkbM 1245 58.47 0 1339654..1340409 + 251 99081086 - TM1040_1245 - FeS assembly ATPase SufC 1246 59.80 0 1340409..1341689 + 426 99081087 - TM1040_1246 - SufBD 1247 57.41 0 1341698..1342183 + 161 99081088 - TM1040_1247 - hypothetical protein 1248 55.27 -1 1342183..1342761 + 192 99081089 - TM1040_1248 - hypothetical protein 1249 54.05 -2 1342754..1343974 + 406 99081090 - TM1040_1249 - cysteine desulfurase 1250 55.32 -1 1344152..1344583 - 143 99081091 - TM1040_1250 - hypothetical protein 1251 56.85 -1 1344583..1347180 - 865 99081092 - TM1040_1251 - TRAP transporter, 4TM/12TM fusion protein 1252 60.70 0 1347286..1348257 - 323 99081093 - TM1040_1252 - TRAP transporter solute receptor TAXI family protein 1253 54.50 -1 1348352..1349239 - 295 99081094 - TM1040_1253 - RpiR family transcriptional regulator 1254 59.17 0 1349387..1351786 + 799 99081095 - TM1040_1254 - FAD dependent oxidoreductase 1255 59.07 0 1352244..1353467 - 407 99081096 - TM1040_1255 - acyl-CoA dehydrogenase-like 1256 58.95 0 1353542..1354474 + 310 99081097 - TM1040_1256 - LysR family transcriptional regulator 1257 62.32 0 1354554..1355243 - 229 99081098 - TM1040_1257 - two component transcriptional regulator 1258 59.07 0 1355247..1355957 - 236 99081099 - TM1040_1258 - phosphate uptake regulator, PhoU 1259 58.27 0 1355974..1356771 - 265 99081100 - TM1040_1259 - phosphate ABC transporter permease 1260 59.06 0 1356784..1358151 - 455 99081101 - TM1040_1260 - phosphate ABC transporter permease 1261 60.85 0 1358151..1359629 - 492 99081102 - TM1040_1261 - phosphate ABC transporter permease 1262 58.60 0 1359739..1360779 - 346 99081103 - TM1040_1262 - phosphate ABC transporter, periplasmic phosphate-binding protein 60.41 MEAN 3.16 STD DEV
Last Updated: Dec 04, 2008
Funding for this work was provided by the Peter Wall Institute for Advanced Studies. This service is hosted by the Brinkman Laboratory of the Department of Molecular Biology and Biochemistry at Simon Fraser University.
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