version 1.0
Silicibacter sp. TM1040, complete genome - 1..3200938 3030 proteins Pos %G+C SD Location Strand Length PID Gene Synonym Code Product 1120 59.88 0 1203290..1206709 + 1139 99080961 - TM1040_1120 - indolepyruvate ferredoxin oxidoreductase 1121 58.59 0 1206847..1207725 + 292 99080962 - TM1040_1121 - phospholipid/glycerol acyltransferase 1122 63.09 0 1207757..1208566 + 269 99080963 - TM1040_1122 - glutamate racemase 1123 58.89 0 1208651..1209679 + 342 99080964 argC TM1040_1123 - N-acetyl-gamma-glutamyl-phosphate reductase 1124 58.56 0 1209696..1210139 + 147 99080965 - TM1040_1124 - cytochrome c-type biogenesis protein CcmE 1125 60.92 0 1210282..1210890 + 202 99080966 - TM1040_1125 - hypothetical protein 1126 61.27 0 1210900..1211436 + 178 99080967 - TM1040_1126 - hypothetical protein 1127 63.21 0 1211514..1213478 + 654 99080968 - TM1040_1127 - cytochrome c-type biogenesis protein CcmF 1128 63.37 0 1213475..1213960 + 161 99080969 - TM1040_1128 - cytochrome C biogenesis protein 1129 60.12 0 1214188..1214706 + 172 99080970 - TM1040_1129 - hypothetical protein 1130 63.21 0 1214788..1215567 + 259 99080971 - TM1040_1130 - short chain enoyl-CoA hydratase / enoyl-CoA hydratase 1131 61.23 0 1215643..1216653 - 336 99080972 - TM1040_1131 - hemolysin-type calcium-binding region 1132 59.41 0 1216941..1218236 - 431 99080973 - TM1040_1132 - citrate synthase 1133 59.96 0 1218376..1219776 - 466 99080974 - TM1040_1133 - glutamyl-tRNA synthetase 1134 65.03 +1 1219862..1221880 + 672 99080975 - TM1040_1134 - ComEC/Rec2-related protein 1135 63.36 0 1221954..1222679 - 241 99080976 - TM1040_1135 - LexA repressor 1136 64.79 +1 1222806..1223978 - 390 99080977 - TM1040_1136 - MoeA-likedomain-containing protein 1137 61.78 0 1223982..1224452 - 156 99080978 moaC TM1040_1137 - molybdenum cofactor biosynthesis protein C 1138 61.36 0 1224499..1225308 - 269 99080979 - TM1040_1138 - indole-3-glycerol-phosphate synthase 1139 67.09 +2 1225301..1226005 - 234 99080980 - TM1040_1139 - uracil-DNA glycosylase 1140 64.03 +1 1226005..1227027 - 340 99080981 - TM1040_1140 - anthranilate phosphoribosyltransferase 1141 59.62 0 1227024..1227605 - 193 99080982 - TM1040_1141 - anthranilate synthase component II 1142 66.22 +1 1227757..1229316 + 519 99080983 - TM1040_1142 - hypothetical protein 1143 62.96 0 1229411..1230922 - 503 99080984 - TM1040_1143 - anthranilate synthase component I 1144 62.53 0 1230946..1232781 - 611 99080985 - TM1040_1144 - putative peptidyl-prolyl cis-trans isomerse D 1145 62.59 0 1232945..1234120 - 391 99080986 - TM1040_1145 - hypothetical protein 1146 63.09 0 1234272..1234802 - 176 99080987 - TM1040_1146 - xanthine-guanine phosphoribosyltransferase 1147 58.12 0 1234809..1235615 - 268 99080988 - TM1040_1147 - enoyl-(acyl carrier protein) reductase 1148 57.76 0 1235783..1236388 + 201 99080989 - TM1040_1148 - pyridoxamine 5'-phosphate oxidase 1149 59.63 0 1236516..1237055 + 179 99080990 - TM1040_1149 - cold-shock DNA-binding protein family protein 1150 60.21 0 1237055..1237534 + 159 99080991 - TM1040_1150 - hypothetical protein 1151 59.33 0 1238449..1242102 + 1217 99080992 - TM1040_1151 - ribonucleotide-diphosphate reductase subunit alpha 1152 63.60 +1 1242589..1243077 + 162 99080993 - TM1040_1152 - hypothetical protein 1153 60.26 0 1243613..1244986 + 457 99080994 - TM1040_1153 - cysteinyl-tRNA synthetase 1154 62.55 0 1244983..1246611 + 542 99080995 - TM1040_1154 - alpha-isopropylmalate/homocitrate synthase family transferase 1155 67.82 +2 1246601..1247377 + 258 99080996 - TM1040_1155 - hypothetical protein 1156 62.11 0 1247435..1248664 - 409 99080997 - TM1040_1156 - major facilitator transporter 1157 64.93 +1 1248737..1249369 + 210 99080998 - TM1040_1157 - HhH-GPD 1158 64.11 +1 1249366..1250031 + 221 99080999 - TM1040_1158 - phospholipase/carboxylesterase 1159 61.69 0 1250051..1250512 - 153 99081000 - TM1040_1159 - AsnC family transcriptional regulator 1160 60.00 0 1250605..1250919 + 104 99081001 - TM1040_1160 - cupin 2, barrel 1161 63.51 0 1250925..1251590 - 221 99081002 - TM1040_1161 - ribosomal large subunit pseudouridine synthase E 1162 57.61 0 1251838..1252422 + 194 99081003 - TM1040_1162 - HNH endonuclease 1163 59.50 0 1252474..1253520 - 348 99081004 - TM1040_1163 - ornithine cyclodeaminase 1164 61.61 0 1253517..1254446 - 309 99081005 - TM1040_1164 - amidinotransferase family protein 1165 63.12 0 1254443..1255372 - 309 99081006 - TM1040_1165 - arginase 1166 61.34 0 1255482..1255913 + 143 99081007 - TM1040_1166 - AsnC family transcriptional regulator 1167 64.35 +1 1255924..1256397 - 157 99081008 - TM1040_1167 - disulphide bond formation protein DsbB 1168 59.41 0 1256394..1256972 - 192 99081009 - TM1040_1168 - DedA family protein 1169 60.13 0 1257343..1259133 - 596 99081010 - TM1040_1169 - diguanylate cyclase with GAF sensor 1170 60.23 0 1259585..1261216 - 543 99081011 - TM1040_1170 - acyl-CoA synthetase 1171 62.67 0 1261221..1262021 - 266 99081012 - TM1040_1171 - enoyl-CoA hydratase 1172 58.00 0 1262032..1262481 - 149 99081013 - TM1040_1172 - OsmC-like protein 1173 59.49 0 1262504..1263646 - 380 99081014 - TM1040_1173 - glycine cleavage T protein (aminomethyl transferase) 1174 56.18 -1 1263806..1264339 - 177 99081015 - TM1040_1174 - AsnC family transcriptional regulator 1175 61.83 0 1264744..1265736 + 330 99081016 - TM1040_1175 - TRAP transporter solute receptor TAXI family protein 1176 63.39 0 1265730..1266737 - 335 99081017 - TM1040_1176 - hypothetical protein 1177 64.97 +1 1266814..1269228 - 804 99081018 - TM1040_1177 - hypothetical protein 1178 65.46 +1 1269225..1269887 - 220 99081019 - TM1040_1178 - ABC transporter related 1179 57.21 -1 1270013..1270456 + 147 99081020 - TM1040_1179 - Ion transport 2 1180 60.44 0 1270487..1271353 + 288 99081021 - TM1040_1180 - ribonuclease BN, putative 1181 62.20 0 1271442..1271687 + 81 99081022 - TM1040_1181 - hypothetical protein 1182 59.83 0 1271718..1272434 - 238 99081023 - TM1040_1182 - ribosomal RNA methyltransferase RrmJ/FtsJ 1183 62.08 0 1272519..1273631 - 370 99081024 - TM1040_1183 - Ppx/GppA phosphatase 1184 59.93 0 1273898..1274194 + 98 99081025 - TM1040_1184 - hypothetical protein 1185 58.95 0 1274224..1275156 + 310 99081026 - TM1040_1185 - metF protein-like 1186 60.91 0 1275160..1276218 + 352 99081027 - TM1040_1186 - methyltetrahydrofolate:corrinoid/iron-sulfur protein methyltransferase 1187 57.99 0 1276546..1277559 + 337 99081028 - TM1040_1187 - sugar ABC transporter (sugar-binding protein) 1188 58.20 0 1277641..1279176 + 511 99081029 - TM1040_1188 - ABC transporter related 1189 59.44 0 1279188..1280183 + 331 99081030 - TM1040_1189 - inner-membrane translocator 1190 60.65 0 1280191..1281171 + 326 99081031 - TM1040_1190 - DeoR family transcriptional regulator 1191 60.94 0 1281161..1282156 + 331 99081032 - TM1040_1191 - aldo/keto reductase 1192 62.70 0 1282229..1283944 + 571 99081033 - TM1040_1192 - FAD dependent oxidoreductase 1193 57.83 0 1283941..1284777 + 278 99081034 - TM1040_1193 - deoxyribose-phosphate aldolase/phospho-2-dehydro-3-deoxyheptonate aldolase 1194 62.76 0 1284794..1286305 + 503 99081035 - TM1040_1194 - carbohydrate kinase, FGGY 1195 61.11 0 1286318..1286605 + 95 99081036 - TM1040_1195 - antibiotic biosynthesis monooxygenase 1196 59.15 0 1286849..1287859 + 336 99081037 - TM1040_1196 - AraC family transcriptional regulator 1197 64.63 +1 1288124..1288369 + 81 99081038 - TM1040_1197 - hypothetical protein 1198 59.39 0 1288731..1289417 + 228 99081039 - TM1040_1198 - hypothetical protein 1199 59.45 0 1289858..1290730 + 290 99081040 - TM1040_1199 - hypothetical protein 1200 59.97 0 1290983..1291579 + 198 99081041 - TM1040_1200 - fused 50S ribosomal protein L21/unknown domain-containing protein 1201 58.89 0 1291592..1291861 + 89 99081042 rpmA TM1040_1201 - 50S ribosomal protein L27 1202 58.10 0 1292084..1292620 + 178 99081043 - TM1040_1202 - GCN5-related N-acetyltransferase 1203 62.08 0 1292795..1293841 + 348 99081044 obgE TM1040_1203 - GTPase ObgE 1204 64.77 +1 1293829..1294935 + 368 99081045 - TM1040_1204 - gamma-glutamyl kinase 1205 62.45 0 1294988..1296292 + 434 99081046 - TM1040_1205 - glutamate-5-semialdehyde dehydrogenase 1206 59.46 0 1296378..1296974 - 198 99081047 - TM1040_1206 - hypothetical protein 1207 55.74 -1 1297004..1297186 + 60 99081048 - TM1040_1207 - hypothetical protein 1208 59.45 0 1297294..1298055 + 253 99081049 - TM1040_1208 - ornithine-acyl[acyl carrier protein] N-acyltransferase 1209 60.86 0 1298052..1298912 + 286 99081050 - TM1040_1209 - lyso-ornithine lipid acyltransferase 1210 61.61 0 1299082..1299852 + 256 99081051 rpsB TM1040_1210 - 30S ribosomal protein S2 1211 59.36 0 1299933..1300808 + 291 99081052 tsf TM1040_1211 - elongation factor Ts 1212 58.20 0 1301262..1302017 - 251 99081053 - TM1040_1212 - LuxR family transcriptional regulator 1213 56.49 -1 1302014..1302514 - 166 99081054 - TM1040_1213 - hypothetical protein 1214 58.79 0 1302602..1303312 + 236 99081055 - TM1040_1214 - enoyl-CoA hydratase/isomerase 1215 53.90 -2 1304000..1304461 - 153 99081056 - TM1040_1215 - response regulator receiver protein 1216 55.50 -1 1304451..1306760 - 769 99081057 - TM1040_1216 - multi-sensor signal transduction histidine kinase 1217 59.26 0 1307375..1307941 - 188 99081058 - TM1040_1217 - twin-arginine translocation pathway signal 1218 60.75 0 1308297..1309919 + 540 99081059 - TM1040_1218 - peptidoglycan binding domain-containing protein 1219 60.99 0 1309957..1311030 + 357 99081060 - TM1040_1219 - UDP-3-O-[3-hydroxymyristoyl] glucosamine N-acyltransferase 60.41 MEAN 3.16 STD DEV
Last Updated: Dec 04, 2008
Funding for this work was provided by the Peter Wall Institute for Advanced Studies. This service is hosted by the Brinkman Laboratory of the Department of Molecular Biology and Biochemistry at Simon Fraser University.
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