version 1.0
Silicibacter sp. TM1040, complete genome - 1..3200938 3030 proteins Pos %G+C SD Location Strand Length PID Gene Synonym Code Product 1087 58.50 0 1162460..1163047 - 195 99080928 - TM1040_1087 - hemolysin-type calcium-binding region 1088 63.41 0 1163480..1164001 - 173 99080929 - TM1040_1088 - hypothetical protein 1089 61.34 0 1163991..1165322 - 443 99080930 - TM1040_1089 - peptidase M23B 1090 63.94 +1 1165550..1166392 - 280 99080931 - TM1040_1090 - hypothetical protein 1091 58.01 0 1166917..1167378 - 153 99080932 - TM1040_1091 - redoxin 1092 65.97 +1 1167440..1170907 + 1155 99080933 - TM1040_1092 - hypothetical protein 1093 63.33 0 1171133..1172182 + 349 99080934 - TM1040_1093 - queuosine biosynthesis protein 1094 61.41 0 1172453..1173727 + 424 99080935 - TM1040_1094 - major facilitator transporter 1095 59.93 0 1173877..1174455 + 192 99080936 - TM1040_1095 - hypothetical protein 1096 60.22 0 1174730..1176124 + 464 99080937 - TM1040_1096 - dihydrolipoamide dehydrogenase 1097 65.99 +1 1176282..1177466 + 394 99080938 - TM1040_1097 - major facilitator transporter 1098 62.00 0 1177570..1180461 + 963 99080939 uvrA TM1040_1098 - excinuclease ABC subunit A 1099 62.44 0 1180567..1181016 - 149 99080940 - TM1040_1099 - hypothetical protein 1100 65.23 +1 1181139..1181903 + 254 99080941 - TM1040_1100 - XRE family transcriptional regulator 1101 64.26 +1 1181900..1182772 - 290 99080942 - TM1040_1101 - 3-hydroxyisobutyrate dehydrogenase 1102 62.93 0 1182774..1183817 - 347 99080943 - TM1040_1102 - enoyl-CoA hydratase/isomerase 1103 61.17 0 1183842..1184987 - 381 99080944 - TM1040_1103 - acyl-CoA dehydrogenase-like 1104 57.32 0 1185278..1187128 + 616 99080945 - TM1040_1104 - TPR repeat-containing protein 1105 61.81 0 1187238..1187855 - 205 99080946 - TM1040_1105 - ErfK/YbiS/YcfS/YnhG 1106 60.87 0 1188053..1189552 - 499 99080947 - TM1040_1106 - methylmalonate-semialdehyde dehydrogenase [acylating] 1107 60.98 0 1189708..1190604 + 298 99080948 - TM1040_1107 - LysR family transcriptional regulator 1108 58.16 0 1190660..1191094 + 144 99080949 - TM1040_1108 - signal-transduction protein 1109 60.44 0 1191220..1191717 + 165 99080950 - TM1040_1109 - coenzyme A biosynthesis protein 1110 54.86 -1 1191785..1191928 - 47 99080951 - TM1040_1110 - hypothetical protein 1111 62.67 0 1192007..1193008 - 333 99080952 - TM1040_1111 - glyceraldehyde-3-phosphate dehydrogenase 1112 60.46 0 1193263..1194213 + 316 99080953 - TM1040_1112 - hypothetical protein 1113 62.56 0 1194349..1196370 - 673 99080954 - TM1040_1113 - transketolase 1114 63.19 0 1196728..1197648 + 306 99080955 - TM1040_1114 - hypothetical protein 1115 62.64 0 1197648..1198193 + 181 99080956 - TM1040_1115 - hypothetical protein 1116 56.75 -1 1198356..1198718 - 120 99080957 - TM1040_1116 - glutaredoxin-like protein 1117 63.29 0 1199086..1199322 - 78 99080958 - TM1040_1117 - BolA-like protein 1118 61.31 0 1199601..1201766 - 721 99080959 - TM1040_1118 - phosphoribosylformylglycinamidine synthase II 1119 57.84 0 1202216..1203121 - 301 99080960 - TM1040_1119 - LysR family transcriptional regulator 1120 59.88 0 1203290..1206709 + 1139 99080961 - TM1040_1120 - indolepyruvate ferredoxin oxidoreductase 1121 58.59 0 1206847..1207725 + 292 99080962 - TM1040_1121 - phospholipid/glycerol acyltransferase 1122 63.09 0 1207757..1208566 + 269 99080963 - TM1040_1122 - glutamate racemase 1123 58.89 0 1208651..1209679 + 342 99080964 argC TM1040_1123 - N-acetyl-gamma-glutamyl-phosphate reductase 1124 58.56 0 1209696..1210139 + 147 99080965 - TM1040_1124 - cytochrome c-type biogenesis protein CcmE 1125 60.92 0 1210282..1210890 + 202 99080966 - TM1040_1125 - hypothetical protein 1126 61.27 0 1210900..1211436 + 178 99080967 - TM1040_1126 - hypothetical protein 1127 63.21 0 1211514..1213478 + 654 99080968 - TM1040_1127 - cytochrome c-type biogenesis protein CcmF 1128 63.37 0 1213475..1213960 + 161 99080969 - TM1040_1128 - cytochrome C biogenesis protein 1129 60.12 0 1214188..1214706 + 172 99080970 - TM1040_1129 - hypothetical protein 1130 63.21 0 1214788..1215567 + 259 99080971 - TM1040_1130 - short chain enoyl-CoA hydratase / enoyl-CoA hydratase 1131 61.23 0 1215643..1216653 - 336 99080972 - TM1040_1131 - hemolysin-type calcium-binding region 1132 59.41 0 1216941..1218236 - 431 99080973 - TM1040_1132 - citrate synthase 1133 59.96 0 1218376..1219776 - 466 99080974 - TM1040_1133 - glutamyl-tRNA synthetase 1134 65.03 +1 1219862..1221880 + 672 99080975 - TM1040_1134 - ComEC/Rec2-related protein 1135 63.36 0 1221954..1222679 - 241 99080976 - TM1040_1135 - LexA repressor 1136 64.79 +1 1222806..1223978 - 390 99080977 - TM1040_1136 - MoeA-likedomain-containing protein 1137 61.78 0 1223982..1224452 - 156 99080978 moaC TM1040_1137 - molybdenum cofactor biosynthesis protein C 1138 61.36 0 1224499..1225308 - 269 99080979 - TM1040_1138 - indole-3-glycerol-phosphate synthase 1139 67.09 +2 1225301..1226005 - 234 99080980 - TM1040_1139 - uracil-DNA glycosylase 1140 64.03 +1 1226005..1227027 - 340 99080981 - TM1040_1140 - anthranilate phosphoribosyltransferase 1141 59.62 0 1227024..1227605 - 193 99080982 - TM1040_1141 - anthranilate synthase component II 1142 66.22 +1 1227757..1229316 + 519 99080983 - TM1040_1142 - hypothetical protein 1143 62.96 0 1229411..1230922 - 503 99080984 - TM1040_1143 - anthranilate synthase component I 1144 62.53 0 1230946..1232781 - 611 99080985 - TM1040_1144 - putative peptidyl-prolyl cis-trans isomerse D 1145 62.59 0 1232945..1234120 - 391 99080986 - TM1040_1145 - hypothetical protein 1146 63.09 0 1234272..1234802 - 176 99080987 - TM1040_1146 - xanthine-guanine phosphoribosyltransferase 1147 58.12 0 1234809..1235615 - 268 99080988 - TM1040_1147 - enoyl-(acyl carrier protein) reductase 1148 57.76 0 1235783..1236388 + 201 99080989 - TM1040_1148 - pyridoxamine 5'-phosphate oxidase 1149 59.63 0 1236516..1237055 + 179 99080990 - TM1040_1149 - cold-shock DNA-binding protein family protein 1150 60.21 0 1237055..1237534 + 159 99080991 - TM1040_1150 - hypothetical protein 1151 59.33 0 1238449..1242102 + 1217 99080992 - TM1040_1151 - ribonucleotide-diphosphate reductase subunit alpha 1152 63.60 +1 1242589..1243077 + 162 99080993 - TM1040_1152 - hypothetical protein 1153 60.26 0 1243613..1244986 + 457 99080994 - TM1040_1153 - cysteinyl-tRNA synthetase 1154 62.55 0 1244983..1246611 + 542 99080995 - TM1040_1154 - alpha-isopropylmalate/homocitrate synthase family transferase 1155 67.82 +2 1246601..1247377 + 258 99080996 - TM1040_1155 - hypothetical protein 1156 62.11 0 1247435..1248664 - 409 99080997 - TM1040_1156 - major facilitator transporter 1157 64.93 +1 1248737..1249369 + 210 99080998 - TM1040_1157 - HhH-GPD 1158 64.11 +1 1249366..1250031 + 221 99080999 - TM1040_1158 - phospholipase/carboxylesterase 1159 61.69 0 1250051..1250512 - 153 99081000 - TM1040_1159 - AsnC family transcriptional regulator 1160 60.00 0 1250605..1250919 + 104 99081001 - TM1040_1160 - cupin 2, barrel 1161 63.51 0 1250925..1251590 - 221 99081002 - TM1040_1161 - ribosomal large subunit pseudouridine synthase E 1162 57.61 0 1251838..1252422 + 194 99081003 - TM1040_1162 - HNH endonuclease 1163 59.50 0 1252474..1253520 - 348 99081004 - TM1040_1163 - ornithine cyclodeaminase 1164 61.61 0 1253517..1254446 - 309 99081005 - TM1040_1164 - amidinotransferase family protein 1165 63.12 0 1254443..1255372 - 309 99081006 - TM1040_1165 - arginase 1166 61.34 0 1255482..1255913 + 143 99081007 - TM1040_1166 - AsnC family transcriptional regulator 1167 64.35 +1 1255924..1256397 - 157 99081008 - TM1040_1167 - disulphide bond formation protein DsbB 1168 59.41 0 1256394..1256972 - 192 99081009 - TM1040_1168 - DedA family protein 1169 60.13 0 1257343..1259133 - 596 99081010 - TM1040_1169 - diguanylate cyclase with GAF sensor 1170 60.23 0 1259585..1261216 - 543 99081011 - TM1040_1170 - acyl-CoA synthetase 1171 62.67 0 1261221..1262021 - 266 99081012 - TM1040_1171 - enoyl-CoA hydratase 1172 58.00 0 1262032..1262481 - 149 99081013 - TM1040_1172 - OsmC-like protein 1173 59.49 0 1262504..1263646 - 380 99081014 - TM1040_1173 - glycine cleavage T protein (aminomethyl transferase) 1174 56.18 -1 1263806..1264339 - 177 99081015 - TM1040_1174 - AsnC family transcriptional regulator 1175 61.83 0 1264744..1265736 + 330 99081016 - TM1040_1175 - TRAP transporter solute receptor TAXI family protein 1176 63.39 0 1265730..1266737 - 335 99081017 - TM1040_1176 - hypothetical protein 1177 64.97 +1 1266814..1269228 - 804 99081018 - TM1040_1177 - hypothetical protein 1178 65.46 +1 1269225..1269887 - 220 99081019 - TM1040_1178 - ABC transporter related 1179 57.21 -1 1270013..1270456 + 147 99081020 - TM1040_1179 - Ion transport 2 1180 60.44 0 1270487..1271353 + 288 99081021 - TM1040_1180 - ribonuclease BN, putative 1181 62.20 0 1271442..1271687 + 81 99081022 - TM1040_1181 - hypothetical protein 1182 59.83 0 1271718..1272434 - 238 99081023 - TM1040_1182 - ribosomal RNA methyltransferase RrmJ/FtsJ 1183 62.08 0 1272519..1273631 - 370 99081024 - TM1040_1183 - Ppx/GppA phosphatase 1184 59.93 0 1273898..1274194 + 98 99081025 - TM1040_1184 - hypothetical protein 1185 58.95 0 1274224..1275156 + 310 99081026 - TM1040_1185 - metF protein-like 1186 60.91 0 1275160..1276218 + 352 99081027 - TM1040_1186 - methyltetrahydrofolate:corrinoid/iron-sulfur protein methyltransferase 60.41 MEAN 3.16 STD DEV
Last Updated: Dec 04, 2008
Funding for this work was provided by the Peter Wall Institute for Advanced Studies. This service is hosted by the Brinkman Laboratory of the Department of Molecular Biology and Biochemistry at Simon Fraser University.
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1.0