IslandPathversion 1.0

IslandPath Analysis: Silicibacter sp. TM1040



Each circle in the graphic corresponds to a predicted protein-coding ORF in the genome. Circle colours indicate if an ORF has a higher or lower %G+C than cutoffs you set below --(default is +/- 3.48 of the mean %G+C). Strike lines across the circles represent regions with dinucleotide bias above a pre-determined cutoff. Click on a circle to view a different portion of the table presented below the graph (default is the first 100 ORFs).
A yellow circle indicates its %G+C value is bigger than the high value. A green circle indicates its %G+C value is bigger than the low value and smaller than the high value. A pink circle indicates its %G+C value is smaller than the low value. A strike line across the circles indicates the region has dinucleotide bais above 1 STD DEV. A black verticle bar indicates a transfer RNA gene lies between the two ORFs. A purple verticle bar indicates a ribosomal RNA gene lies between the two ORFs. A deep blue verticle bar indicates both a tRNA and rRNA gene lie between the two ORFs. A black square indicates the dot is annotated as a transposase. A black triangle indicates the dot is annotated as an integrase. Low: High: Mean: 60.41 STD DEV: 3.16
Silicibacter sp. TM1040, complete genome - 1..3200938
3030 proteins
Pos	%G+C	SD	Location	Strand	Length	PID	Gene	Synonym	Code	Product
1045	 59.04	0	1124490..1124843	-	117	99080886	rpsF	TM1040_1045	-	30S ribosomal protein S6
1046	 64.23	+1	1125241..1125774	+	177	99080887	-	TM1040_1046	-	hypothetical protein
1047	 57.99	0	1126045..1126620	+	191	99080888	-	TM1040_1047	-	YceI
1048	 59.90	0	1126856..1127638	+	260	99080889	-	TM1040_1048	-	ABC-type amino acid transport/signal transduction systems
1049	 61.56	0	1127786..1129018	-	410	99080890	-	TM1040_1049	-	cytochrome B561
1050	 66.45	+1	1129265..1130200	+	311	99080891	-	TM1040_1050	-	[Acyl-carrier-protein] S-malonyltransferase
1051	 63.01	0	1130221..1130958	+	245	99080892	-	TM1040_1051	-	3-oxoacyl-[acyl-carrier-protein] reductase
1052	 57.26	0	1131343..1131576	+	77	99080893	acpP	TM1040_1052	-	acyl carrier protein
1053	 60.35	0	1131760..1132503	+	247	99080894	-	TM1040_1053	-	histidine biosynthesis
1054	 61.23	0	1133065..1134333	+	422	99080895	-	TM1040_1054	-	3-oxoacyl-(acyl carrier protein) synthase II
1055	 63.38	0	1134335..1135489	+	384	99080896	-	TM1040_1055	-	aminodeoxychorismate lyase
1056	 62.84	0	1135720..1136163	+	147	99080897	-	TM1040_1056	-	hypothetical protein
1057	 67.68	+2	1136156..1137433	+	425	99080898	-	TM1040_1057	-	hypothetical protein
1058	 67.58	+2	1137683..1138888	+	401	99080899	-	TM1040_1058	-	Phage portal protein, HK97
1059	 62.67	0	1138881..1139105	+	74	99080900	-	TM1040_1059	-	hypothetical protein
1060	 67.36	+2	1139140..1139712	+	190	99080901	-	TM1040_1060	-	peptidase U35, phage prohead HK97
1061	 62.24	0	1139733..1140929	+	398	99080902	-	TM1040_1061	-	phage major capsid protein, HK97
1062	 68.33	+2	1141108..1141710	+	200	99080903	-	TM1040_1062	-	phiE125 gp8 hypothetical protein
1063	 66.96	+2	1141707..1142045	+	112	99080904	-	TM1040_1063	-	hypothetical protein
1064	 66.91	+2	1142042..1142449	+	135	99080905	-	TM1040_1064	-	hypothetical protein
1065	 60.87	0	1142485..1142898	+	137	99080906	-	TM1040_1065	-	Phage major tail protein, TP901-1
1066	 64.81	+1	1142902..1143225	+	107	99080907	-	TM1040_1066	-	hypothetical protein
1067	 63.89	+1	1143222..1143437	+	71	99080908	-	TM1040_1067	-	hypothetical protein
1068	 67.42	+2	1143441..1144100	+	219	99080909	-	TM1040_1068	-	phage-related minor tail protein-like
1069	 62.72	0	1144114..1144746	+	210	99080910	-	TM1040_1069	-	hypothetical protein
1070	 64.96	+1	1144746..1145624	+	292	99080911	-	TM1040_1070	-	phage protein
1071	 68.95	+2	1145621..1146058	+	145	99080912	-	TM1040_1071	-	putative phage cell wall peptidase, NlpC/P60
1072	 66.03	+1	1146071..1149991	+	1306	99080913	-	TM1040_1072	-	hypothetical protein
1073	 72.44	+2	1149988..1150299	+	103	99080914	-	TM1040_1073	-	hypothetical protein
1074	 59.90	0	1150412..1150618	-	68	99080915	-	TM1040_1074	-	cold-shock DNA-binding protein family protein
1075	 62.08	0	1150977..1151783	+	268	99080916	-	TM1040_1075	-	serine O-acetyltransferase
1076	 63.00	0	1151953..1152252	+	99	99080917	-	TM1040_1076	-	hypothetical protein
1077	 65.32	+1	1152399..1153739	-	446	99080918	-	TM1040_1077	-	branched-chain alpha-keto acid dehydrogenase subunit E2
1078	 61.73	0	1153751..1155127	-	458	99080919	-	TM1040_1078	-	pyruvate dehydrogenase subunit beta
1079	 60.16	0	1155145..1156158	-	337	99080920	-	TM1040_1079	-	pyruvate dehydrogenase (lipoamide)
1080	 58.54	0	1156201..1156446	-	81	99080921	-	TM1040_1080	-	hypothetical protein
1081	 60.67	0	1156589..1156888	-	99	99080922	-	TM1040_1081	-	septum formation initiator
1082	 52.89	-2	1157120..1157569	-	149	99080923	-	TM1040_1082	-	hypothetical protein
1083	 62.04	0	1157674..1159446	-	590	99080924	-	TM1040_1083	-	methyl-accepting chemotaxis sensory transducer
1084	 63.64	+1	1159751..1160941	-	396	99080925	pgk	TM1040_1084	-	phosphoglycerate kinase
1085	 59.96	0	1161321..1161827	+	168	99080926	-	TM1040_1085	-	peptidyl-prolyl cis-trans isomerase, cyclophilin type
1086	 61.75	0	1161820..1162368	+	182	99080927	-	TM1040_1086	-	peptidyl-prolyl cis-trans isomerase, cyclophilin type
1087	 58.50	0	1162460..1163047	-	195	99080928	-	TM1040_1087	-	hemolysin-type calcium-binding region
1088	 63.41	0	1163480..1164001	-	173	99080929	-	TM1040_1088	-	hypothetical protein
1089	 61.34	0	1163991..1165322	-	443	99080930	-	TM1040_1089	-	peptidase M23B
1090	 63.94	+1	1165550..1166392	-	280	99080931	-	TM1040_1090	-	hypothetical protein
1091	 58.01	0	1166917..1167378	-	153	99080932	-	TM1040_1091	-	redoxin
1092	 65.97	+1	1167440..1170907	+	1155	99080933	-	TM1040_1092	-	hypothetical protein
1093	 63.33	0	1171133..1172182	+	349	99080934	-	TM1040_1093	-	queuosine biosynthesis protein
1094	 61.41	0	1172453..1173727	+	424	99080935	-	TM1040_1094	-	major facilitator transporter
1095	 59.93	0	1173877..1174455	+	192	99080936	-	TM1040_1095	-	hypothetical protein
1096	 60.22	0	1174730..1176124	+	464	99080937	-	TM1040_1096	-	dihydrolipoamide dehydrogenase
1097	 65.99	+1	1176282..1177466	+	394	99080938	-	TM1040_1097	-	major facilitator transporter
1098	 62.00	0	1177570..1180461	+	963	99080939	uvrA	TM1040_1098	-	excinuclease ABC subunit A
1099	 62.44	0	1180567..1181016	-	149	99080940	-	TM1040_1099	-	hypothetical protein
1100	 65.23	+1	1181139..1181903	+	254	99080941	-	TM1040_1100	-	XRE family transcriptional regulator
1101	 64.26	+1	1181900..1182772	-	290	99080942	-	TM1040_1101	-	3-hydroxyisobutyrate dehydrogenase
1102	 62.93	0	1182774..1183817	-	347	99080943	-	TM1040_1102	-	enoyl-CoA hydratase/isomerase
1103	 61.17	0	1183842..1184987	-	381	99080944	-	TM1040_1103	-	acyl-CoA dehydrogenase-like
1104	 57.32	0	1185278..1187128	+	616	99080945	-	TM1040_1104	-	TPR repeat-containing protein
1105	 61.81	0	1187238..1187855	-	205	99080946	-	TM1040_1105	-	ErfK/YbiS/YcfS/YnhG
1106	 60.87	0	1188053..1189552	-	499	99080947	-	TM1040_1106	-	methylmalonate-semialdehyde dehydrogenase [acylating]
1107	 60.98	0	1189708..1190604	+	298	99080948	-	TM1040_1107	-	LysR family transcriptional regulator
1108	 58.16	0	1190660..1191094	+	144	99080949	-	TM1040_1108	-	signal-transduction protein
1109	 60.44	0	1191220..1191717	+	165	99080950	-	TM1040_1109	-	coenzyme A biosynthesis protein
1110	 54.86	-1	1191785..1191928	-	47	99080951	-	TM1040_1110	-	hypothetical protein
1111	 62.67	0	1192007..1193008	-	333	99080952	-	TM1040_1111	-	glyceraldehyde-3-phosphate dehydrogenase
1112	 60.46	0	1193263..1194213	+	316	99080953	-	TM1040_1112	-	hypothetical protein
1113	 62.56	0	1194349..1196370	-	673	99080954	-	TM1040_1113	-	transketolase
1114	 63.19	0	1196728..1197648	+	306	99080955	-	TM1040_1114	-	hypothetical protein
1115	 62.64	0	1197648..1198193	+	181	99080956	-	TM1040_1115	-	hypothetical protein
1116	 56.75	-1	1198356..1198718	-	120	99080957	-	TM1040_1116	-	glutaredoxin-like protein
1117	 63.29	0	1199086..1199322	-	78	99080958	-	TM1040_1117	-	BolA-like protein
1118	 61.31	0	1199601..1201766	-	721	99080959	-	TM1040_1118	-	phosphoribosylformylglycinamidine synthase II
1119	 57.84	0	1202216..1203121	-	301	99080960	-	TM1040_1119	-	LysR family transcriptional regulator
1120	 59.88	0	1203290..1206709	+	1139	99080961	-	TM1040_1120	-	indolepyruvate ferredoxin oxidoreductase
1121	 58.59	0	1206847..1207725	+	292	99080962	-	TM1040_1121	-	phospholipid/glycerol acyltransferase
1122	 63.09	0	1207757..1208566	+	269	99080963	-	TM1040_1122	-	glutamate racemase
1123	 58.89	0	1208651..1209679	+	342	99080964	argC	TM1040_1123	-	N-acetyl-gamma-glutamyl-phosphate reductase
1124	 58.56	0	1209696..1210139	+	147	99080965	-	TM1040_1124	-	cytochrome c-type biogenesis protein CcmE
1125	 60.92	0	1210282..1210890	+	202	99080966	-	TM1040_1125	-	hypothetical protein
1126	 61.27	0	1210900..1211436	+	178	99080967	-	TM1040_1126	-	hypothetical protein
1127	 63.21	0	1211514..1213478	+	654	99080968	-	TM1040_1127	-	cytochrome c-type biogenesis protein CcmF
1128	 63.37	0	1213475..1213960	+	161	99080969	-	TM1040_1128	-	cytochrome C biogenesis protein
1129	 60.12	0	1214188..1214706	+	172	99080970	-	TM1040_1129	-	hypothetical protein
1130	 63.21	0	1214788..1215567	+	259	99080971	-	TM1040_1130	-	short chain enoyl-CoA hydratase / enoyl-CoA hydratase
1131	 61.23	0	1215643..1216653	-	336	99080972	-	TM1040_1131	-	hemolysin-type calcium-binding region
1132	 59.41	0	1216941..1218236	-	431	99080973	-	TM1040_1132	-	citrate synthase
1133	 59.96	0	1218376..1219776	-	466	99080974	-	TM1040_1133	-	glutamyl-tRNA synthetase
1134	 65.03	+1	1219862..1221880	+	672	99080975	-	TM1040_1134	-	ComEC/Rec2-related protein
1135	 63.36	0	1221954..1222679	-	241	99080976	-	TM1040_1135	-	LexA repressor
1136	 64.79	+1	1222806..1223978	-	390	99080977	-	TM1040_1136	-	MoeA-likedomain-containing protein
1137	 61.78	0	1223982..1224452	-	156	99080978	moaC	TM1040_1137	-	molybdenum cofactor biosynthesis protein C
1138	 61.36	0	1224499..1225308	-	269	99080979	-	TM1040_1138	-	indole-3-glycerol-phosphate synthase
1139	 67.09	+2	1225301..1226005	-	234	99080980	-	TM1040_1139	-	uracil-DNA glycosylase
1140	 64.03	+1	1226005..1227027	-	340	99080981	-	TM1040_1140	-	anthranilate phosphoribosyltransferase
1141	 59.62	0	1227024..1227605	-	193	99080982	-	TM1040_1141	-	anthranilate synthase component II
1142	 66.22	+1	1227757..1229316	+	519	99080983	-	TM1040_1142	-	hypothetical protein
1143	 62.96	0	1229411..1230922	-	503	99080984	-	TM1040_1143	-	anthranilate synthase component I
1144	 62.53	0	1230946..1232781	-	611	99080985	-	TM1040_1144	-	putative peptidyl-prolyl cis-trans isomerse D
60.41	MEAN

3.16	STD DEV



Last Updated: Dec 04, 2008

Funding for this work was provided by the Peter Wall Institute for Advanced Studies. This service is hosted by the Brinkman Laboratory of the Department of Molecular Biology and Biochemistry at Simon Fraser University.