version 1.0
Silicibacter sp. TM1040, complete genome - 1..3200938 3030 proteins Pos %G+C SD Location Strand Length PID Gene Synonym Code Product 1040 59.84 0 1121099..1121977 + 292 99080881 - TM1040_1040 - flagellin-like 1041 55.20 -1 1122288..1122662 + 124 99080882 - TM1040_1041 - hypothetical protein 1042 53.45 -2 1123134..1123481 - 115 99080883 - TM1040_1042 - hypothetical protein 1043 59.84 0 1123604..1124218 - 204 99080884 rplI TM1040_1043 - 50S ribosomal protein L9 1044 58.33 0 1124232..1124459 - 75 99080885 rpsR TM1040_1044 - 30S ribosomal protein S18 1045 59.04 0 1124490..1124843 - 117 99080886 rpsF TM1040_1045 - 30S ribosomal protein S6 1046 64.23 +1 1125241..1125774 + 177 99080887 - TM1040_1046 - hypothetical protein 1047 57.99 0 1126045..1126620 + 191 99080888 - TM1040_1047 - YceI 1048 59.90 0 1126856..1127638 + 260 99080889 - TM1040_1048 - ABC-type amino acid transport/signal transduction systems 1049 61.56 0 1127786..1129018 - 410 99080890 - TM1040_1049 - cytochrome B561 1050 66.45 +1 1129265..1130200 + 311 99080891 - TM1040_1050 - [Acyl-carrier-protein] S-malonyltransferase 1051 63.01 0 1130221..1130958 + 245 99080892 - TM1040_1051 - 3-oxoacyl-[acyl-carrier-protein] reductase 1052 57.26 0 1131343..1131576 + 77 99080893 acpP TM1040_1052 - acyl carrier protein 1053 60.35 0 1131760..1132503 + 247 99080894 - TM1040_1053 - histidine biosynthesis 1054 61.23 0 1133065..1134333 + 422 99080895 - TM1040_1054 - 3-oxoacyl-(acyl carrier protein) synthase II 1055 63.38 0 1134335..1135489 + 384 99080896 - TM1040_1055 - aminodeoxychorismate lyase 1056 62.84 0 1135720..1136163 + 147 99080897 - TM1040_1056 - hypothetical protein 1057 67.68 +2 1136156..1137433 + 425 99080898 - TM1040_1057 - hypothetical protein 1058 67.58 +2 1137683..1138888 + 401 99080899 - TM1040_1058 - Phage portal protein, HK97 1059 62.67 0 1138881..1139105 + 74 99080900 - TM1040_1059 - hypothetical protein 1060 67.36 +2 1139140..1139712 + 190 99080901 - TM1040_1060 - peptidase U35, phage prohead HK97 1061 62.24 0 1139733..1140929 + 398 99080902 - TM1040_1061 - phage major capsid protein, HK97 1062 68.33 +2 1141108..1141710 + 200 99080903 - TM1040_1062 - phiE125 gp8 hypothetical protein 1063 66.96 +2 1141707..1142045 + 112 99080904 - TM1040_1063 - hypothetical protein 1064 66.91 +2 1142042..1142449 + 135 99080905 - TM1040_1064 - hypothetical protein 1065 60.87 0 1142485..1142898 + 137 99080906 - TM1040_1065 - Phage major tail protein, TP901-1 1066 64.81 +1 1142902..1143225 + 107 99080907 - TM1040_1066 - hypothetical protein 1067 63.89 +1 1143222..1143437 + 71 99080908 - TM1040_1067 - hypothetical protein 1068 67.42 +2 1143441..1144100 + 219 99080909 - TM1040_1068 - phage-related minor tail protein-like 1069 62.72 0 1144114..1144746 + 210 99080910 - TM1040_1069 - hypothetical protein 1070 64.96 +1 1144746..1145624 + 292 99080911 - TM1040_1070 - phage protein 1071 68.95 +2 1145621..1146058 + 145 99080912 - TM1040_1071 - putative phage cell wall peptidase, NlpC/P60 1072 66.03 +1 1146071..1149991 + 1306 99080913 - TM1040_1072 - hypothetical protein 1073 72.44 +2 1149988..1150299 + 103 99080914 - TM1040_1073 - hypothetical protein 1074 59.90 0 1150412..1150618 - 68 99080915 - TM1040_1074 - cold-shock DNA-binding protein family protein 1075 62.08 0 1150977..1151783 + 268 99080916 - TM1040_1075 - serine O-acetyltransferase 1076 63.00 0 1151953..1152252 + 99 99080917 - TM1040_1076 - hypothetical protein 1077 65.32 +1 1152399..1153739 - 446 99080918 - TM1040_1077 - branched-chain alpha-keto acid dehydrogenase subunit E2 1078 61.73 0 1153751..1155127 - 458 99080919 - TM1040_1078 - pyruvate dehydrogenase subunit beta 1079 60.16 0 1155145..1156158 - 337 99080920 - TM1040_1079 - pyruvate dehydrogenase (lipoamide) 1080 58.54 0 1156201..1156446 - 81 99080921 - TM1040_1080 - hypothetical protein 1081 60.67 0 1156589..1156888 - 99 99080922 - TM1040_1081 - septum formation initiator 1082 52.89 -2 1157120..1157569 - 149 99080923 - TM1040_1082 - hypothetical protein 1083 62.04 0 1157674..1159446 - 590 99080924 - TM1040_1083 - methyl-accepting chemotaxis sensory transducer 1084 63.64 +1 1159751..1160941 - 396 99080925 pgk TM1040_1084 - phosphoglycerate kinase 1085 59.96 0 1161321..1161827 + 168 99080926 - TM1040_1085 - peptidyl-prolyl cis-trans isomerase, cyclophilin type 1086 61.75 0 1161820..1162368 + 182 99080927 - TM1040_1086 - peptidyl-prolyl cis-trans isomerase, cyclophilin type 1087 58.50 0 1162460..1163047 - 195 99080928 - TM1040_1087 - hemolysin-type calcium-binding region 1088 63.41 0 1163480..1164001 - 173 99080929 - TM1040_1088 - hypothetical protein 1089 61.34 0 1163991..1165322 - 443 99080930 - TM1040_1089 - peptidase M23B 1090 63.94 +1 1165550..1166392 - 280 99080931 - TM1040_1090 - hypothetical protein 1091 58.01 0 1166917..1167378 - 153 99080932 - TM1040_1091 - redoxin 1092 65.97 +1 1167440..1170907 + 1155 99080933 - TM1040_1092 - hypothetical protein 1093 63.33 0 1171133..1172182 + 349 99080934 - TM1040_1093 - queuosine biosynthesis protein 1094 61.41 0 1172453..1173727 + 424 99080935 - TM1040_1094 - major facilitator transporter 1095 59.93 0 1173877..1174455 + 192 99080936 - TM1040_1095 - hypothetical protein 1096 60.22 0 1174730..1176124 + 464 99080937 - TM1040_1096 - dihydrolipoamide dehydrogenase 1097 65.99 +1 1176282..1177466 + 394 99080938 - TM1040_1097 - major facilitator transporter 1098 62.00 0 1177570..1180461 + 963 99080939 uvrA TM1040_1098 - excinuclease ABC subunit A 1099 62.44 0 1180567..1181016 - 149 99080940 - TM1040_1099 - hypothetical protein 1100 65.23 +1 1181139..1181903 + 254 99080941 - TM1040_1100 - XRE family transcriptional regulator 1101 64.26 +1 1181900..1182772 - 290 99080942 - TM1040_1101 - 3-hydroxyisobutyrate dehydrogenase 1102 62.93 0 1182774..1183817 - 347 99080943 - TM1040_1102 - enoyl-CoA hydratase/isomerase 1103 61.17 0 1183842..1184987 - 381 99080944 - TM1040_1103 - acyl-CoA dehydrogenase-like 1104 57.32 0 1185278..1187128 + 616 99080945 - TM1040_1104 - TPR repeat-containing protein 1105 61.81 0 1187238..1187855 - 205 99080946 - TM1040_1105 - ErfK/YbiS/YcfS/YnhG 1106 60.87 0 1188053..1189552 - 499 99080947 - TM1040_1106 - methylmalonate-semialdehyde dehydrogenase [acylating] 1107 60.98 0 1189708..1190604 + 298 99080948 - TM1040_1107 - LysR family transcriptional regulator 1108 58.16 0 1190660..1191094 + 144 99080949 - TM1040_1108 - signal-transduction protein 1109 60.44 0 1191220..1191717 + 165 99080950 - TM1040_1109 - coenzyme A biosynthesis protein 1110 54.86 -1 1191785..1191928 - 47 99080951 - TM1040_1110 - hypothetical protein 1111 62.67 0 1192007..1193008 - 333 99080952 - TM1040_1111 - glyceraldehyde-3-phosphate dehydrogenase 1112 60.46 0 1193263..1194213 + 316 99080953 - TM1040_1112 - hypothetical protein 1113 62.56 0 1194349..1196370 - 673 99080954 - TM1040_1113 - transketolase 1114 63.19 0 1196728..1197648 + 306 99080955 - TM1040_1114 - hypothetical protein 1115 62.64 0 1197648..1198193 + 181 99080956 - TM1040_1115 - hypothetical protein 1116 56.75 -1 1198356..1198718 - 120 99080957 - TM1040_1116 - glutaredoxin-like protein 1117 63.29 0 1199086..1199322 - 78 99080958 - TM1040_1117 - BolA-like protein 1118 61.31 0 1199601..1201766 - 721 99080959 - TM1040_1118 - phosphoribosylformylglycinamidine synthase II 1119 57.84 0 1202216..1203121 - 301 99080960 - TM1040_1119 - LysR family transcriptional regulator 1120 59.88 0 1203290..1206709 + 1139 99080961 - TM1040_1120 - indolepyruvate ferredoxin oxidoreductase 1121 58.59 0 1206847..1207725 + 292 99080962 - TM1040_1121 - phospholipid/glycerol acyltransferase 1122 63.09 0 1207757..1208566 + 269 99080963 - TM1040_1122 - glutamate racemase 1123 58.89 0 1208651..1209679 + 342 99080964 argC TM1040_1123 - N-acetyl-gamma-glutamyl-phosphate reductase 1124 58.56 0 1209696..1210139 + 147 99080965 - TM1040_1124 - cytochrome c-type biogenesis protein CcmE 1125 60.92 0 1210282..1210890 + 202 99080966 - TM1040_1125 - hypothetical protein 1126 61.27 0 1210900..1211436 + 178 99080967 - TM1040_1126 - hypothetical protein 1127 63.21 0 1211514..1213478 + 654 99080968 - TM1040_1127 - cytochrome c-type biogenesis protein CcmF 1128 63.37 0 1213475..1213960 + 161 99080969 - TM1040_1128 - cytochrome C biogenesis protein 1129 60.12 0 1214188..1214706 + 172 99080970 - TM1040_1129 - hypothetical protein 1130 63.21 0 1214788..1215567 + 259 99080971 - TM1040_1130 - short chain enoyl-CoA hydratase / enoyl-CoA hydratase 1131 61.23 0 1215643..1216653 - 336 99080972 - TM1040_1131 - hemolysin-type calcium-binding region 1132 59.41 0 1216941..1218236 - 431 99080973 - TM1040_1132 - citrate synthase 1133 59.96 0 1218376..1219776 - 466 99080974 - TM1040_1133 - glutamyl-tRNA synthetase 1134 65.03 +1 1219862..1221880 + 672 99080975 - TM1040_1134 - ComEC/Rec2-related protein 1135 63.36 0 1221954..1222679 - 241 99080976 - TM1040_1135 - LexA repressor 1136 64.79 +1 1222806..1223978 - 390 99080977 - TM1040_1136 - MoeA-likedomain-containing protein 1137 61.78 0 1223982..1224452 - 156 99080978 moaC TM1040_1137 - molybdenum cofactor biosynthesis protein C 1138 61.36 0 1224499..1225308 - 269 99080979 - TM1040_1138 - indole-3-glycerol-phosphate synthase 1139 67.09 +2 1225301..1226005 - 234 99080980 - TM1040_1139 - uracil-DNA glycosylase 60.41 MEAN 3.16 STD DEV
Last Updated: Dec 04, 2008
Funding for this work was provided by the Peter Wall Institute for Advanced Studies. This service is hosted by the Brinkman Laboratory of the Department of Molecular Biology and Biochemistry at Simon Fraser University.
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