version 1.0
Silicibacter sp. TM1040, complete genome - 1..3200938 3030 proteins Pos %G+C SD Location Strand Length PID Gene Synonym Code Product 1011 61.23 0 1082157..1083461 - 434 99080852 - TM1040_1011 - adenylosuccinate lyase 1012 62.16 0 1083576..1083908 - 110 99080853 - TM1040_1012 - hypothetical protein 1013 62.66 0 1083921..1085192 - 423 99080854 - TM1040_1013 - OsmC-like protein 1014 63.27 0 1085321..1085908 + 195 99080855 - TM1040_1014 - NUDIX hydrolase 1015 66.56 +1 1085908..1086813 + 301 99080856 - TM1040_1015 - endonuclease/exonuclease/phosphatase 1016 60.12 0 1086832..1088175 - 447 99080857 - TM1040_1016 - peptidase M24 1017 62.37 0 1088369..1089136 + 255 99080858 - TM1040_1017 - hypothetical protein 1018 59.33 0 1089174..1090373 - 399 99080859 - TM1040_1018 - hypothetical protein 1019 62.12 0 1090440..1091252 - 270 99080860 - TM1040_1019 - hypothetical protein 1020 63.82 +1 1091340..1092602 - 420 99080861 - TM1040_1020 - molecular chaperone, DnaK 1021 57.58 0 1092602..1093228 + 208 99080862 - TM1040_1021 - hypothetical protein 1022 58.85 0 1093375..1094781 - 468 99080863 - TM1040_1022 - L-glutamine synthetase 1023 55.16 -1 1094869..1095207 - 112 99080864 - TM1040_1023 - nitrogen regulatory protein P-II 1024 66.48 +1 1095376..1096962 + 528 99080865 - TM1040_1024 - YjeF-related protein-like 1025 65.39 +1 1096959..1097507 - 182 99080866 - TM1040_1025 - hypothetical protein 1026 59.43 0 1097776..1100565 + 929 99080867 - TM1040_1026 - bifunctional aconitate hydratase 2/2-methylisocitrate dehydratase 1027 58.46 0 1100965..1103352 + 795 99080868 - TM1040_1027 - methyl-accepting chemotaxis sensory transducer 1028 59.59 0 1103990..1107736 + 1248 99080869 - TM1040_1028 - signal transduction histidine kinase with CheB and CheR activity 1029 53.65 -2 1107741..1108124 + 127 99080870 - TM1040_1029 - response regulator receiver protein 1030 60.91 0 1108141..1110486 + 781 99080871 - TM1040_1030 - histidine kinase 1031 60.86 0 1110483..1110878 + 131 99080872 - TM1040_1031 - response regulator receiver protein 1032 61.07 0 1111339..1112463 + 374 99080873 - TM1040_1032 - hypothetical protein 1033 58.93 0 1112761..1114092 + 443 99080874 tig TM1040_1033 - trigger factor 1034 51.28 -2 1114264..1114497 + 77 99080875 - TM1040_1034 - hypothetical protein 1035 61.68 0 1114531..1115472 + 313 99080876 - TM1040_1035 - diguanylate cyclase 1036 60.69 0 1115617..1117575 - 652 99080877 cpdB TM1040_1036 - bifunctional 2',3'-cyclic nucleotide 2'-phosphodiesterase/3'-nucleotidase periplasmic precursor protein 1037 57.96 0 1117856..1118326 - 156 99080878 - TM1040_1037 - lytic transglycosylase, catalytic 1038 59.36 0 1118812..1119660 + 282 99080879 - TM1040_1038 - flagellin-like 1039 59.69 0 1119990..1120835 + 281 99080880 - TM1040_1039 - flagellin-like 1040 59.84 0 1121099..1121977 + 292 99080881 - TM1040_1040 - flagellin-like 1041 55.20 -1 1122288..1122662 + 124 99080882 - TM1040_1041 - hypothetical protein 1042 53.45 -2 1123134..1123481 - 115 99080883 - TM1040_1042 - hypothetical protein 1043 59.84 0 1123604..1124218 - 204 99080884 rplI TM1040_1043 - 50S ribosomal protein L9 1044 58.33 0 1124232..1124459 - 75 99080885 rpsR TM1040_1044 - 30S ribosomal protein S18 1045 59.04 0 1124490..1124843 - 117 99080886 rpsF TM1040_1045 - 30S ribosomal protein S6 1046 64.23 +1 1125241..1125774 + 177 99080887 - TM1040_1046 - hypothetical protein 1047 57.99 0 1126045..1126620 + 191 99080888 - TM1040_1047 - YceI 1048 59.90 0 1126856..1127638 + 260 99080889 - TM1040_1048 - ABC-type amino acid transport/signal transduction systems 1049 61.56 0 1127786..1129018 - 410 99080890 - TM1040_1049 - cytochrome B561 1050 66.45 +1 1129265..1130200 + 311 99080891 - TM1040_1050 - [Acyl-carrier-protein] S-malonyltransferase 1051 63.01 0 1130221..1130958 + 245 99080892 - TM1040_1051 - 3-oxoacyl-[acyl-carrier-protein] reductase 1052 57.26 0 1131343..1131576 + 77 99080893 acpP TM1040_1052 - acyl carrier protein 1053 60.35 0 1131760..1132503 + 247 99080894 - TM1040_1053 - histidine biosynthesis 1054 61.23 0 1133065..1134333 + 422 99080895 - TM1040_1054 - 3-oxoacyl-(acyl carrier protein) synthase II 1055 63.38 0 1134335..1135489 + 384 99080896 - TM1040_1055 - aminodeoxychorismate lyase 1056 62.84 0 1135720..1136163 + 147 99080897 - TM1040_1056 - hypothetical protein 1057 67.68 +2 1136156..1137433 + 425 99080898 - TM1040_1057 - hypothetical protein 1058 67.58 +2 1137683..1138888 + 401 99080899 - TM1040_1058 - Phage portal protein, HK97 1059 62.67 0 1138881..1139105 + 74 99080900 - TM1040_1059 - hypothetical protein 1060 67.36 +2 1139140..1139712 + 190 99080901 - TM1040_1060 - peptidase U35, phage prohead HK97 1061 62.24 0 1139733..1140929 + 398 99080902 - TM1040_1061 - phage major capsid protein, HK97 1062 68.33 +2 1141108..1141710 + 200 99080903 - TM1040_1062 - phiE125 gp8 hypothetical protein 1063 66.96 +2 1141707..1142045 + 112 99080904 - TM1040_1063 - hypothetical protein 1064 66.91 +2 1142042..1142449 + 135 99080905 - TM1040_1064 - hypothetical protein 1065 60.87 0 1142485..1142898 + 137 99080906 - TM1040_1065 - Phage major tail protein, TP901-1 1066 64.81 +1 1142902..1143225 + 107 99080907 - TM1040_1066 - hypothetical protein 1067 63.89 +1 1143222..1143437 + 71 99080908 - TM1040_1067 - hypothetical protein 1068 67.42 +2 1143441..1144100 + 219 99080909 - TM1040_1068 - phage-related minor tail protein-like 1069 62.72 0 1144114..1144746 + 210 99080910 - TM1040_1069 - hypothetical protein 1070 64.96 +1 1144746..1145624 + 292 99080911 - TM1040_1070 - phage protein 1071 68.95 +2 1145621..1146058 + 145 99080912 - TM1040_1071 - putative phage cell wall peptidase, NlpC/P60 1072 66.03 +1 1146071..1149991 + 1306 99080913 - TM1040_1072 - hypothetical protein 1073 72.44 +2 1149988..1150299 + 103 99080914 - TM1040_1073 - hypothetical protein 1074 59.90 0 1150412..1150618 - 68 99080915 - TM1040_1074 - cold-shock DNA-binding protein family protein 1075 62.08 0 1150977..1151783 + 268 99080916 - TM1040_1075 - serine O-acetyltransferase 1076 63.00 0 1151953..1152252 + 99 99080917 - TM1040_1076 - hypothetical protein 1077 65.32 +1 1152399..1153739 - 446 99080918 - TM1040_1077 - branched-chain alpha-keto acid dehydrogenase subunit E2 1078 61.73 0 1153751..1155127 - 458 99080919 - TM1040_1078 - pyruvate dehydrogenase subunit beta 1079 60.16 0 1155145..1156158 - 337 99080920 - TM1040_1079 - pyruvate dehydrogenase (lipoamide) 1080 58.54 0 1156201..1156446 - 81 99080921 - TM1040_1080 - hypothetical protein 1081 60.67 0 1156589..1156888 - 99 99080922 - TM1040_1081 - septum formation initiator 1082 52.89 -2 1157120..1157569 - 149 99080923 - TM1040_1082 - hypothetical protein 1083 62.04 0 1157674..1159446 - 590 99080924 - TM1040_1083 - methyl-accepting chemotaxis sensory transducer 1084 63.64 +1 1159751..1160941 - 396 99080925 pgk TM1040_1084 - phosphoglycerate kinase 1085 59.96 0 1161321..1161827 + 168 99080926 - TM1040_1085 - peptidyl-prolyl cis-trans isomerase, cyclophilin type 1086 61.75 0 1161820..1162368 + 182 99080927 - TM1040_1086 - peptidyl-prolyl cis-trans isomerase, cyclophilin type 1087 58.50 0 1162460..1163047 - 195 99080928 - TM1040_1087 - hemolysin-type calcium-binding region 1088 63.41 0 1163480..1164001 - 173 99080929 - TM1040_1088 - hypothetical protein 1089 61.34 0 1163991..1165322 - 443 99080930 - TM1040_1089 - peptidase M23B 1090 63.94 +1 1165550..1166392 - 280 99080931 - TM1040_1090 - hypothetical protein 1091 58.01 0 1166917..1167378 - 153 99080932 - TM1040_1091 - redoxin 1092 65.97 +1 1167440..1170907 + 1155 99080933 - TM1040_1092 - hypothetical protein 1093 63.33 0 1171133..1172182 + 349 99080934 - TM1040_1093 - queuosine biosynthesis protein 1094 61.41 0 1172453..1173727 + 424 99080935 - TM1040_1094 - major facilitator transporter 1095 59.93 0 1173877..1174455 + 192 99080936 - TM1040_1095 - hypothetical protein 1096 60.22 0 1174730..1176124 + 464 99080937 - TM1040_1096 - dihydrolipoamide dehydrogenase 1097 65.99 +1 1176282..1177466 + 394 99080938 - TM1040_1097 - major facilitator transporter 1098 62.00 0 1177570..1180461 + 963 99080939 uvrA TM1040_1098 - excinuclease ABC subunit A 1099 62.44 0 1180567..1181016 - 149 99080940 - TM1040_1099 - hypothetical protein 1100 65.23 +1 1181139..1181903 + 254 99080941 - TM1040_1100 - XRE family transcriptional regulator 1101 64.26 +1 1181900..1182772 - 290 99080942 - TM1040_1101 - 3-hydroxyisobutyrate dehydrogenase 1102 62.93 0 1182774..1183817 - 347 99080943 - TM1040_1102 - enoyl-CoA hydratase/isomerase 1103 61.17 0 1183842..1184987 - 381 99080944 - TM1040_1103 - acyl-CoA dehydrogenase-like 1104 57.32 0 1185278..1187128 + 616 99080945 - TM1040_1104 - TPR repeat-containing protein 1105 61.81 0 1187238..1187855 - 205 99080946 - TM1040_1105 - ErfK/YbiS/YcfS/YnhG 1106 60.87 0 1188053..1189552 - 499 99080947 - TM1040_1106 - methylmalonate-semialdehyde dehydrogenase [acylating] 1107 60.98 0 1189708..1190604 + 298 99080948 - TM1040_1107 - LysR family transcriptional regulator 1108 58.16 0 1190660..1191094 + 144 99080949 - TM1040_1108 - signal-transduction protein 1109 60.44 0 1191220..1191717 + 165 99080950 - TM1040_1109 - coenzyme A biosynthesis protein 1110 54.86 -1 1191785..1191928 - 47 99080951 - TM1040_1110 - hypothetical protein 60.41 MEAN 3.16 STD DEV
Last Updated: Dec 04, 2008
Funding for this work was provided by the Peter Wall Institute for Advanced Studies. This service is hosted by the Brinkman Laboratory of the Department of Molecular Biology and Biochemistry at Simon Fraser University.
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