version 1.0
Silicibacter sp. TM1040, complete genome - 1..3200938 3030 proteins Pos %G+C SD Location Strand Length PID Gene Synonym Code Product 964 63.50 0 1031901..1032911 + 336 99080805 - TM1040_0964 - tRNA-dihydrouridine synthase A 965 62.66 0 1032917..1033714 + 265 99080806 - TM1040_0965 - hypothetical protein 966 62.87 0 1033845..1034081 - 78 99080807 - TM1040_0966 - hypothetical protein 967 60.13 0 1034085..1034558 - 157 99080808 - TM1040_0967 - Holliday junction resolvase YqgF 968 64.16 +1 1034555..1035793 - 412 99080809 - TM1040_0968 - cytochrome c-type biogenesis protein CycH 969 60.80 0 1035985..1037280 + 431 99080810 - TM1040_0969 - sarcosine oxidase beta subunit family protein 970 62.76 0 1037333..1037665 + 110 99080811 - TM1040_0970 - sarcosine oxidase, delta subunit, heterotetrameric 971 61.96 0 1037740..1040775 + 1011 99080812 - TM1040_0971 - sarcosine oxidase alpha subunit family protein 972 62.28 0 1040768..1041337 + 189 99080813 - TM1040_0972 - sarcosine oxidase, gamma subunit 973 51.58 -2 1041451..1041861 + 136 99080814 - TM1040_0973 - hypothetical protein 974 52.82 -2 1042009..1042398 + 129 99080815 - TM1040_0974 - hypothetical protein 975 53.46 -2 1042474..1042935 + 153 99080816 - TM1040_0975 - hypothetical protein 976 57.33 0 1043026..1043625 + 199 99080817 - TM1040_0976 - superoxide dismutase 977 58.21 0 1043784..1044398 + 204 99080818 - TM1040_0977 - GCN5-related N-acetyltransferase 978 63.17 0 1044530..1045072 - 180 99080819 - TM1040_0978 - hypothetical protein 979 65.70 +1 1045222..1047177 + 651 99080820 - TM1040_0979 - peptidoglycan-binding LysM 980 62.33 0 1047285..1049105 + 606 99080821 - TM1040_0980 - ABC transporter related 981 60.24 0 1049409..1049657 + 82 99080822 - TM1040_0981 - calcium-binding EF-hand 982 58.80 0 1050017..1050601 - 194 99080823 - TM1040_0982 - TetR family transcriptional regulator 983 58.15 0 1050757..1051590 + 277 99080824 - TM1040_0983 - short chain dehydrogenase 984 59.66 0 1052015..1053841 + 608 99080825 - TM1040_0984 - methyl-accepting chemotaxis sensory transducer 985 57.50 0 1054046..1054285 - 79 99080826 - TM1040_0985 - hypothetical protein 986 55.66 -1 1054261..1054578 - 105 99080827 - TM1040_0986 - hypothetical protein 987 61.75 0 1054875..1058678 - 1267 99080828 - TM1040_0987 - acriflavin resistance protein 988 64.34 +1 1058675..1059922 - 415 99080829 - TM1040_0988 - secretion protein HlyD 989 64.13 +1 1060287..1060955 + 222 99080830 - TM1040_0989 - hypothetical protein 990 65.08 +1 1061024..1062349 + 441 99080831 - TM1040_0990 - Pyrrolo-quinoline quinone 991 61.80 0 1062663..1064141 + 492 99080832 engA TM1040_0991 - GTP-binding protein EngA 992 55.03 -1 1064391..1065344 + 317 99080833 - TM1040_0992 - fatty acid desaturase 993 59.85 0 1065465..1066124 + 219 99080834 - TM1040_0993 - helix-hairpin-helix DNA-binding, class 1 994 63.50 0 1066244..1067536 - 430 99080835 - TM1040_0994 - seryl-tRNA synthetase 995 57.54 0 1067792..1068076 + 94 99080836 - TM1040_0995 - protein translocase subunit yajC 996 62.04 0 1068111..1069775 + 554 99080837 secD TM1040_0996 - preprotein translocase subunit SecD 997 59.13 0 1069779..1070747 + 322 99080838 secF TM1040_0997 - preprotein translocase subunit SecF 998 60.73 0 1070995..1071348 + 117 99080839 - TM1040_0998 - hypothetical protein 999 65.69 +1 1071433..1072047 + 204 99080840 - TM1040_0999 - cytochrome c biogenesis protein CcmA 1000 64.23 +1 1072044..1072700 + 218 99080841 - TM1040_1000 - heme exporter protein CcmB 1001 59.86 0 1072745..1073479 + 244 99080842 - TM1040_1001 - heme exporter protein CcmC 1002 58.33 0 1073472..1073627 + 51 99080843 - TM1040_1002 - Heme exporter protein D (CcmD) 1003 62.76 0 1073620..1074156 + 178 99080844 - TM1040_1003 - periplasmic protein thiol 1004 62.70 0 1074159..1074863 - 234 99080845 - TM1040_1004 - short-chain dehydrogenase/reductase SDR 1005 56.03 -1 1075048..1075395 - 115 99080846 - TM1040_1005 - hypothetical protein 1006 60.33 0 1075536..1078283 - 915 99080847 - TM1040_1006 - aconitate hydratase 1007 60.77 0 1078584..1079210 + 208 99080848 - TM1040_1007 - hypothetical protein 1008 60.04 0 1079214..1080134 - 306 99080849 - TM1040_1008 - lipid A biosynthesis acyltransferase 1009 60.51 0 1080288..1081391 - 367 99080850 - TM1040_1009 - flagellar motor switch protein FliG 1010 58.24 0 1081470..1082015 - 181 99080851 - TM1040_1010 - tetratricopeptide TPR_2 1011 61.23 0 1082157..1083461 - 434 99080852 - TM1040_1011 - adenylosuccinate lyase 1012 62.16 0 1083576..1083908 - 110 99080853 - TM1040_1012 - hypothetical protein 1013 62.66 0 1083921..1085192 - 423 99080854 - TM1040_1013 - OsmC-like protein 1014 63.27 0 1085321..1085908 + 195 99080855 - TM1040_1014 - NUDIX hydrolase 1015 66.56 +1 1085908..1086813 + 301 99080856 - TM1040_1015 - endonuclease/exonuclease/phosphatase 1016 60.12 0 1086832..1088175 - 447 99080857 - TM1040_1016 - peptidase M24 1017 62.37 0 1088369..1089136 + 255 99080858 - TM1040_1017 - hypothetical protein 1018 59.33 0 1089174..1090373 - 399 99080859 - TM1040_1018 - hypothetical protein 1019 62.12 0 1090440..1091252 - 270 99080860 - TM1040_1019 - hypothetical protein 1020 63.82 +1 1091340..1092602 - 420 99080861 - TM1040_1020 - molecular chaperone, DnaK 1021 57.58 0 1092602..1093228 + 208 99080862 - TM1040_1021 - hypothetical protein 1022 58.85 0 1093375..1094781 - 468 99080863 - TM1040_1022 - L-glutamine synthetase 1023 55.16 -1 1094869..1095207 - 112 99080864 - TM1040_1023 - nitrogen regulatory protein P-II 1024 66.48 +1 1095376..1096962 + 528 99080865 - TM1040_1024 - YjeF-related protein-like 1025 65.39 +1 1096959..1097507 - 182 99080866 - TM1040_1025 - hypothetical protein 1026 59.43 0 1097776..1100565 + 929 99080867 - TM1040_1026 - bifunctional aconitate hydratase 2/2-methylisocitrate dehydratase 1027 58.46 0 1100965..1103352 + 795 99080868 - TM1040_1027 - methyl-accepting chemotaxis sensory transducer 1028 59.59 0 1103990..1107736 + 1248 99080869 - TM1040_1028 - signal transduction histidine kinase with CheB and CheR activity 1029 53.65 -2 1107741..1108124 + 127 99080870 - TM1040_1029 - response regulator receiver protein 1030 60.91 0 1108141..1110486 + 781 99080871 - TM1040_1030 - histidine kinase 1031 60.86 0 1110483..1110878 + 131 99080872 - TM1040_1031 - response regulator receiver protein 1032 61.07 0 1111339..1112463 + 374 99080873 - TM1040_1032 - hypothetical protein 1033 58.93 0 1112761..1114092 + 443 99080874 tig TM1040_1033 - trigger factor 1034 51.28 -2 1114264..1114497 + 77 99080875 - TM1040_1034 - hypothetical protein 1035 61.68 0 1114531..1115472 + 313 99080876 - TM1040_1035 - diguanylate cyclase 1036 60.69 0 1115617..1117575 - 652 99080877 cpdB TM1040_1036 - bifunctional 2',3'-cyclic nucleotide 2'-phosphodiesterase/3'-nucleotidase periplasmic precursor protein 1037 57.96 0 1117856..1118326 - 156 99080878 - TM1040_1037 - lytic transglycosylase, catalytic 1038 59.36 0 1118812..1119660 + 282 99080879 - TM1040_1038 - flagellin-like 1039 59.69 0 1119990..1120835 + 281 99080880 - TM1040_1039 - flagellin-like 1040 59.84 0 1121099..1121977 + 292 99080881 - TM1040_1040 - flagellin-like 1041 55.20 -1 1122288..1122662 + 124 99080882 - TM1040_1041 - hypothetical protein 1042 53.45 -2 1123134..1123481 - 115 99080883 - TM1040_1042 - hypothetical protein 1043 59.84 0 1123604..1124218 - 204 99080884 rplI TM1040_1043 - 50S ribosomal protein L9 1044 58.33 0 1124232..1124459 - 75 99080885 rpsR TM1040_1044 - 30S ribosomal protein S18 1045 59.04 0 1124490..1124843 - 117 99080886 rpsF TM1040_1045 - 30S ribosomal protein S6 1046 64.23 +1 1125241..1125774 + 177 99080887 - TM1040_1046 - hypothetical protein 1047 57.99 0 1126045..1126620 + 191 99080888 - TM1040_1047 - YceI 1048 59.90 0 1126856..1127638 + 260 99080889 - TM1040_1048 - ABC-type amino acid transport/signal transduction systems 1049 61.56 0 1127786..1129018 - 410 99080890 - TM1040_1049 - cytochrome B561 1050 66.45 +1 1129265..1130200 + 311 99080891 - TM1040_1050 - [Acyl-carrier-protein] S-malonyltransferase 1051 63.01 0 1130221..1130958 + 245 99080892 - TM1040_1051 - 3-oxoacyl-[acyl-carrier-protein] reductase 1052 57.26 0 1131343..1131576 + 77 99080893 acpP TM1040_1052 - acyl carrier protein 1053 60.35 0 1131760..1132503 + 247 99080894 - TM1040_1053 - histidine biosynthesis 1054 61.23 0 1133065..1134333 + 422 99080895 - TM1040_1054 - 3-oxoacyl-(acyl carrier protein) synthase II 1055 63.38 0 1134335..1135489 + 384 99080896 - TM1040_1055 - aminodeoxychorismate lyase 1056 62.84 0 1135720..1136163 + 147 99080897 - TM1040_1056 - hypothetical protein 1057 67.68 +2 1136156..1137433 + 425 99080898 - TM1040_1057 - hypothetical protein 1058 67.58 +2 1137683..1138888 + 401 99080899 - TM1040_1058 - Phage portal protein, HK97 1059 62.67 0 1138881..1139105 + 74 99080900 - TM1040_1059 - hypothetical protein 1060 67.36 +2 1139140..1139712 + 190 99080901 - TM1040_1060 - peptidase U35, phage prohead HK97 1061 62.24 0 1139733..1140929 + 398 99080902 - TM1040_1061 - phage major capsid protein, HK97 1062 68.33 +2 1141108..1141710 + 200 99080903 - TM1040_1062 - phiE125 gp8 hypothetical protein 1063 66.96 +2 1141707..1142045 + 112 99080904 - TM1040_1063 - hypothetical protein 60.41 MEAN 3.16 STD DEV
Last Updated: Dec 04, 2008
Funding for this work was provided by the Peter Wall Institute for Advanced Studies. This service is hosted by the Brinkman Laboratory of the Department of Molecular Biology and Biochemistry at Simon Fraser University.
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