IslandPath Analysis: Sinorhizobium medicae WSM419



Each circle in the graphic corresponds to a predicted protein-coding ORF in the genome.
Circle colours indicate if an ORF has a higher or lower %G+C than cutoffs you set below
--(default is +/- 3.48 of the mean %G+C).
Strike lines across the circles represent regions with dinucleotide bias above a pre-determined cutoff.
Click on a circle to view a different portion of the table presented below the graph (default is the first 100 ORFs).




A yellow circle indicates its %G+C value is bigger than the high value.
A green circle indicates its %G+C value is bigger than the low value and smaller than the high value.
A pink circle indicates its %G+C value is smaller than the low value.

A strike line across the circles indicates the region has dinucleotide bais above 1 STD DEV.
A black verticle bar indicates a transfer RNA gene lies between the two ORFs.
A purple verticle bar indicates a ribosomal RNA gene lies between the two ORFs.
A deep blue verticle bar indicates both a tRNA and rRNA gene lie between the two ORFs.
A black square indicates the dot is annotated as a transposase.
A black triangle indicates the dot is annotated as an integrase.


Low:  High:    Mean: 61.69   STD DEV: 2.82
Sinorhizobium medicae WSM419, complete genome - 1..3781904
3529 proteins
Pos	%G+C	SD	Location	Strand	Length	PID	Gene	Synonym	Code	Product
878	 62.06	0	945840..947315	-	491	150396106	-	Smed_0883	-	HlyD family type I secretion membrane fusion protein
879	 62.86	0	947312..949492	-	726	150396107	-	Smed_0884	-	type I secretion system ATPase
880	 58.26	-1	949610..951976	-	788	150396108	-	Smed_0885	-	hypothetical protein
881	 64.41	0	951802..958143	-	2113	150396109	-	Smed_0886	-	hypothetical protein
882	 49.31	-2	958178..958978	-	266	150396110	-	Smed_0887	-	hypothetical protein
883	 54.64	-2	960392..960757	+	121	150396111	-	Smed_0888	-	NADH dehydrogenase subunit A
884	 62.52	0	960748..961326	+	192	150396112	-	Smed_0889	-	NADH dehydrogenase subunit B
885	 59.90	0	961345..961950	+	201	150396113	-	Smed_0890	-	NADH dehydrogenase subunit C
886	 62.13	0	962007..963197	+	396	150396114	-	Smed_0891	-	NADH dehydrogenase subunit D
887	 61.96	0	963197..963451	+	84	150396115	-	Smed_0892	-	putative signal peptide protein
888	 62.77	0	963468..964289	+	273	150396116	-	Smed_0893	-	NADH dehydrogenase subunit E
889	 62.61	0	964304..965608	+	434	150396117	-	Smed_0894	-	NADH dehydrogenase I subunit F
890	 66.82	+1	965614..966276	+	220	150396118	-	Smed_0895	-	putative NADH dehydrogenase I chain E
891	 63.64	0	966399..968480	+	693	150396119	-	Smed_0896	-	NADH dehydrogenase subunit G
892	 60.44	0	968501..969544	+	347	150396120	-	Smed_0897	-	NADH dehydrogenase subunit H
893	 60.77	0	969609..970100	+	163	150396121	-	Smed_0898	-	NADH dehydrogenase subunit I
894	 60.39	0	970197..970865	+	222	150396122	-	Smed_0899	-	NADH dehydrogenase subunit J
895	 55.99	-2	970895..971203	+	102	150396123	-	Smed_0900	-	NADH dehydrogenase subunit K
896	 60.45	0	971211..973205	+	664	150396124	-	Smed_0901	-	NADH dehydrogenase subunit L
897	 59.99	0	973205..974716	+	503	150396125	-	Smed_0902	-	NADH dehydrogenase subunit M
898	 61.19	0	974736..976178	+	480	150396126	-	Smed_0903	-	NADH dehydrogenase subunit N
899	 65.62	+1	976175..976942	+	255	150396127	-	Smed_0904	-	biotin--acetyl-CoA-carboxylase ligase
900	 62.35	0	976968..978635	+	555	150396128	-	Smed_0905	-	beta-lactamase domain-containing protein
901	 60.49	0	978692..979096	+	134	150396129	-	Smed_0906	-	methylmalonyl-CoA epimerase
902	 57.41	-1	979229..979498	+	89	150396130	-	Smed_0907	-	hypothetical protein
903	 62.34	0	980177..981469	+	430	150396131	-	Smed_0908	-	FAD-dependent pyridine nucleotide-disulphide oxidoreductase
904	 58.48	-1	981466..981795	-	109	150396132	-	Smed_0909	-	Rieske (2Fe-2S) domain-containing protein
905	 64.33	0	981897..983138	-	413	150396133	-	Smed_0910	-	FAD-dependent pyridine nucleotide-disulphide oxidoreductase
906	 55.16	-2	983298..984296	-	332	150396134	-	Smed_0911	-	sterol desaturase
907	 59.88	0	984289..984450	-	53	150396135	-	Smed_0912	-	hypothetical protein
908	 60.44	0	984447..985313	-	288	150396136	-	Smed_0913	-	xylose isomerase domain-containing protein
909	 60.53	0	985404..986414	-	336	150396137	-	Smed_0914	-	monosaccharide-transporting ATPase
910	 58.33	-1	986411..987166	-	251	150396138	-	Smed_0915	-	ABC transporter related
911	 60.51	0	987231..988253	-	340	150396139	-	Smed_0916	-	putative periplasmic binding ABC transporter protein
912	 57.50	-1	988586..989578	-	330	150396140	-	Smed_0917	-	regulatory protein LacI
913	 59.74	0	990004..991332	+	442	150396141	-	Smed_0918	-	prolyl-tRNA synthetase
914	 61.33	0	991351..992661	+	436	150396142	-	Smed_0919	-	LolC/E family lipoprotein releasing system, transmembrane protein
915	 63.76	0	992679..993365	+	228	150396143	-	Smed_0920	-	ABC transporter related
916	 61.61	0	993789..997286	+	1165	150396144	dnaE	Smed_0921	-	DNA polymerase III subunit alpha
917	 61.78	0	997329..998555	-	408	150396145	-	Smed_0922	-	hypothetical protein
918	 62.95	0	998681..999973	-	430	150396146	-	Smed_0923	-	DNA polymerase IV
919	 60.81	0	1000147..1000419	-	90	150396147	-	Smed_0924	-	hypothetical protein
920	 54.03	-2	1000576..1000947	+	123	150396148	-	Smed_0925	-	response regulator receiver protein
921	 60.89	0	1000965..1002332	+	455	150396149	pleD	Smed_0926	-	response regulator PleD
922	 52.38	-2	1002858..1003025	-	55	150396150	rpmG	Smed_0927	-	50S ribosomal protein L33
923	 61.77	0	1003121..1004305	-	394	150396151	-	Smed_0928	-	major facilitator transporter
924	 62.76	0	1004317..1005033	-	238	150396152	-	Smed_0929	-	NUDIX hydrolase
925	 62.94	0	1005030..1005485	-	151	150396153	-	Smed_0930	-	hypothetical protein
926	 63.54	0	1005520..1007889	-	789	150396154	-	Smed_0931	-	ribonuclease R
927	 61.97	0	1007892..1010636	-	914	150396155	-	Smed_0932	-	DNA topoisomerase I
928	 66.41	+1	1010787..1011938	-	383	150396156	-	Smed_0933	-	DNA protecting protein DprA
929	 61.93	0	1011938..1012549	-	203	150396157	-	Smed_0934	-	putative glycerol-3-phosphate acyltransferase PlsY
930	 62.95	0	1012579..1013871	-	430	150396158	-	Smed_0935	-	dihydroorotase
931	 62.63	0	1013868..1014809	-	313	150396159	pyrB	Smed_0936	-	aspartate carbamoyltransferase catalytic subunit
932	 63.58	0	1014994..1016646	+	550	150396160	-	Smed_0937	-	acyl-CoA dehydrogenase domain-containing protein
933	 60.68	0	1016628..1017563	-	311	150396161	-	Smed_0938	-	auxin efflux carrier
934	 57.92	-1	1017734..1017916	+	60	150396162	-	Smed_0939	-	hypothetical protein
935	 61.61	0	1017913..1018248	+	111	150396163	-	Smed_0940	-	hypothetical protein
936	 62.65	0	1018182..1018679	-	165	150396164	-	Smed_0941	-	Holliday junction resolvase YqgF
937	 60.14	0	1018798..1019502	+	234	150396165	-	Smed_0942	-	metal-dependent hydrolase
938	 59.03	0	1019598..1019885	+	95	150396166	-	Smed_0943	-	glutamyl-tRNA(Gln) amidotransferase, C subunit
939	 63.09	0	1019935..1021416	+	493	150396167	gatA	Smed_0944	-	aspartyl/glutamyl-tRNA amidotransferase subunit A
940	 55.69	-2	1021519..1021764	-	81	150396168	-	Smed_0945	-	hypothetical protein
941	 60.48	0	1022099..1023601	+	500	150396169	gatB	Smed_0946	-	aspartyl/glutamyl-tRNA amidotransferase subunit B
942	 58.73	-1	1023598..1024101	+	167	150396170	-	Smed_0947	-	GCN5-related N-acetyltransferase
943	 62.63	0	1024254..1024649	+	131	150396171	-	Smed_0948	-	NADH dehydrogenase
944	 61.81	0	1024832..1025284	+	150	150396172	-	Smed_0949	-	hypothetical protein
945	 58.70	-1	1025746..1026360	-	204	150396173	aat	Smed_0951	-	leucyl/phenylalanyl-tRNA--protein transferase
946	 60.12	0	1026370..1027713	-	447	150396174	-	Smed_0952	-	acetyl-CoA carboxylase biotin carboxylase subunit
947	 62.89	0	1027726..1028202	-	158	150396175	-	Smed_0953	-	acetyl-CoA carboxylase biotin carboxyl carrier protein subunit
948	 55.48	-2	1028226..1028672	-	148	150396176	-	Smed_0954	-	3-dehydroquinate dehydratase
949	 61.46	0	1028829..1029596	-	255	150396177	-	Smed_0955	-	DSBA oxidoreductase
950	 61.80	0	1031233..1034067	-	944	150396178	-	Smed_0957	-	ribonuclease
951	 56.19	-1	1034324..1034638	+	104	150396179	-	Smed_0958	-	hypothetical protein
952	 61.47	0	1034795..1036045	+	416	150396180	-	Smed_0959	-	N-acetylmuramoyl-L-alanine amidase
953	 61.41	0	1036481..1038934	+	817	150396181	-	Smed_0960	-	1A family penicillin-binding protein
954	 61.90	0	1039191..1040219	+	342	150396182	-	Smed_0961	-	peptide chain release factor 2
955	 61.08	0	1040332..1040832	-	166	150396183	-	Smed_0962	-	hypothetical protein
956	 59.95	0	1040919..1041692	-	257	150396184	ppnK	Smed_0963	-	inorganic polyphosphate/ATP-NAD kinase
957	 61.52	0	1042293..1042661	+	122	150396185	-	Smed_0964	-	hypothetical protein
958	 64.02	0	1042863..1043807	-	314	150396186	-	Smed_0965	-	LysR family transcriptional regulator
959	 60.55	0	1044014..1044634	+	206	150396187	-	Smed_0966	-	NAD(P)H dehydrogenase (quinone)
960	 64.21	0	1044836..1045120	+	94	150396188	-	Smed_0967	-	hypothetical protein
961	 64.27	0	1045110..1045985	-	291	150396189	-	Smed_0968	-	RNA methyltransferase
962	 61.31	0	1046647..1047822	+	391	150396190	-	Smed_0969	-	elongation factor Tu
963	 62.46	0	1048100..1048765	+	221	150396191	-	Smed_0970	-	hypothetical protein
964	 56.60	-1	1048866..1049759	+	297	150396192	-	Smed_0971	-	NAD-dependent epimerase/dehydratase
965	 52.74	-2	1050192..1050392	+	66	150396193	secE	Smed_0972	-	preprotein translocase subunit SecE
966	 57.63	-1	1050409..1050939	+	176	150396194	nusG	Smed_0973	-	transcription antitermination protein NusG
967	 58.74	-1	1051156..1051584	+	142	150396195	rplK	Smed_0974	-	50S ribosomal protein L11
968	 62.52	0	1051589..1052287	+	232	150396196	rplA	Smed_0975	-	50S ribosomal protein L1
969	 61.22	0	1052552..1053139	+	195	150396197	rplJ	Smed_0976	-	50S ribosomal protein L10
970	 58.20	-1	1053198..1053575	+	125	150396198	rplL	Smed_0977	-	50S ribosomal protein L7/L12
971	 60.51	0	1053840..1057982	+	1380	150396199	rpoB	Smed_0978	-	DNA-directed RNA polymerase subunit beta
972	 59.89	0	1058166..1062371	+	1401	150396200	-	Smed_0979	-	DNA-directed RNA polymerase subunit beta'
973	 59.93	0	1062472..1062768	-	98	150396201	-	Smed_0980	-	hypothetical protein
974	 59.95	0	1063468..1063839	+	123	150396202	rpsL	Smed_0981	-	30S ribosomal protein S12
975	 59.02	0	1063897..1064367	+	156	150396203	-	Smed_0982	-	30S ribosomal protein S7
976	 59.24	0	1064397..1066496	+	699	150396204	-	Smed_0983	-	elongation factor G
977	 61.39	0	1066568..1067743	+	391	150396205	-	Smed_0984	-	elongation factor Tu
61.69	MEAN

2.82	STD DEV




Last Updated: Dec 04, 2008
      
Funding for this work was provided by the Peter Wall Institute for Advanced Studies. This service is hosted by the Brinkman Laboratory of the Department of Molecular Biology and Biochemistry at Simon Fraser University.